gdpd5b (gdpd5,LOC103357216)


Basic Information

Item Value
gene id gdpd5b
gene name gdpd5,LOC103357216
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21664076 ~ 21710363 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU25499
AAGATGGCTTTCTATCATAACAGCACGGTGGTTTTCCGGCTGAGGAGACCTCCTCCAGAGCACCCCTGCTACCACAGCTGGGTCAATGATACGCTGCAGGCTGTGCAACAATCTGGGGTTCCTCAGGGTCTGGTGATGTGGACTCCAGATGAACACAGAGCTCAGGTAAGACAGCTGGCACCCGGTCTGATCCAGACCTCAGTGGAGAAACGGAGTCCTCAATTTCTCCATCAGTACGGCATCAGCCGGCTGCTGCTCAGATACAACCAGGCCAGCCCTCAGGAAATCAggtaggaacacacacacacacacacacaaacacaaacctgATACCGTTGTCAGGTTGGCACCTTAACGCATAGATTTATGGACATGTCTGAATGTGTCCGCTTTCAGAAACTTCTCCCAGAGCAACATCAACCTCACCCTTTACACCATCAATGAGCCCTGGCTGTACTCAGTGCTCTGGTGCAGTGGGGTGTCTTCAGTCTCCTCAGAGGCCTCGCATATCCTGAAAAAGGTGCCTTACCCCATCTGGCTCATGAGACCAGATGAATACTGCCTGATGTGGGTGTCTGTGGACCTCCTCTCCTTTGCTGTAGTCATAGGAATATTCATTTTCCAGAACTATCACATGATCAGGTATCGGATGAGCGGGATGCGCAGCTACAACCCTGAACAGATCATGCTGAGCGCCGCAGTCAGGAGGTCGAGCAGAGACCTCAACGTCATGAAGGAGAAACTTATCTTCTCTGAGGTGGGGAATGGAGTCGGCAGTGCTGAGGAGCTGTACGCGGACAATGGCTACGACTACTACACCAATCAGGGCATTAGCCAATGATCGGGACTGAGCCTGAGTGAATCTGCTGTAGCGAGATGGAGACGACAACGCTCTGTGTTCACATCATTCCTGTTCTAGTCTGTGTAATGtctgatctcctcctcctgtcctaGTGAATAACAGTGAATAACAGTTCCTACTGCTGTATCGGATGGAGAAAAACAACCACCCAGTTAATTTGTGTACATTCTGTAAATAGTTTTGTGTTTTGCTTTTCGGACATGCTGTTTATCACCCAGGACTGCACGCACTTTTTATTAATGGAATTTGCCAAATCTGTGGACTCGTCTCTCACACCCGAGAGGCCCCTCTGAGTTACCAAGGCCTGCTTCTTTTAAAGAGGTTTCCAGATTCTTTATTATTTTAAGCTAATTTTCCAAAGCAGTTCCTTGTTTTTAACCACTGTACATGATATTCTTCTCTCCTAGCAGGTGAATTTCCTTTATAAAGAGGCTTTTTACAAGGCTTTATTGCAGCAATAGACTAAACGCTACCGCTCATTATGCTCTTGCCTCCTGTCAGCACGCCATTGTGCGGTTGTTCTTAATAGTACTAacattaatatttatatttaaagagAGAAACGAAAAACATGAACACGCCGTTTACACAATCCTGCCTTTTCTTCCAAGTGAAATATTCACAAGGTGTATGTAAGATAATTATTTCGATAAATGCTGAATGCCCCCCCACACCTCCCTGCCCTACTTTTGACCAGTGTATGTAACCATGATGATCATGCTGACTGATATCTGTGAGCTGTGCTCCCAGAGCACCAGAAGAACAGGTGAAAACGGTTTGGGGATGAGGAGTTGTGCTGTCTGTTTATGGTTCATGTGAATGTGTTTGgacagttttcttttctttttttttaaagatgtgaacggtgtattgtgtgtattctGGCTgggtatattttttttaccccGTGTGCAGTGCTATGTTGAGTGTGTTATTGTACATAAAAGGTGAACCAGTGTGTGAGATGCTCCAGCCAACTAAGCATTACATTTGAACAACGTGACTGATGAGTAATAATTACAATAGCAATAGCCTGGTCAAGATGGAAGTCATTTGCCTTCCTACACAGCCTCTGAATTGCAGTTACCTCTGTGGTATTTAAGTGTTGACAGACAACATGCATCTAAATGTTGGTTGCTGGTGTAAAACTGACTGCTGTAAGGTAAATGAAGTAGGTgctaaatgtgaaaataaagcTCTAAGCTAATTGAAGGGACGCTACAGGTAACACAGGGTCAATAAACTGATtgccttttgtgttttctttttgtattaCTGTGC
>XM_039788843.1
CGGTGACGCTTTCTCACTGTACACGGGGGCTGGAAATAAAAAAGACCGACACACACTCCTCCCACCATTCATTCAGTACGCTACATTGAGTTACCCTGTTGGTTTATGTATCGCTGCCTACACGGAGACGAGGAAGCACGCTTAATCTACAGATGGGACGAAAAAACACAGAGGACGGAGTAACTGAAAATAGCTAGACCGAAGCCACTGACACCGTCCGTACTCACCCTGCTCCTTTCTCCTTTGTTTTCGATGTAAAACTTCGTCTCTGTCAGCATTTACGTTACCGACCACCCACCTCTCACACGTTACCTTTGACAAGGGTTGTTCCCGTTTGACTCTCGGGGGAGGCATTTCActggagagaaaggaaaagaaaagcctCAACTTTACTGTGTGCCGCAAAGCTAACTCTGAAATCAAAGAAAAGTGGTAGCAGACTTCAGACAGGACACTTCGTAGTCAGTGGGATGTTAGAGCTCTGGAAGCAGGACTGACTGAAGGAGCATGGTGAAACACCAACCCCTCCAGGTCTATGAGCGCCAGCTGTGTTTGTCATGTATCACTGGGATCTACGGTTGCCGCTGGAAACGCTATCAACGTTCCCATGATGACACCACCAAGtggGAGCTGCTGTGgtccttcatcctcctctttacCTTCTGTCTGCTGCTGGTCTGGTTCTACTTCTGGTGGGAGGCACATAACGACTACAATGAGTTCAACTGGTTCCTCTACAACCGCTCTGGGGAGTGGAGTGATGGCACTGTTCCCATCCTGGCCACCACCGCTGCTGGCTTCACCTACATCGCATTTTTAATGGTTTTAGCACTTTGCCACATTGCACTTGGGCAACAGTTGAATTTACACTGGCTCCATAAGATAGGAGTGGCTGCTGCTCTGTTCACCACCATTGTCGGGGTGATATCTGTCAATCAAACATGGGGGCAAGAGTGGGATGTCATCCCCATCTCCCTGCAGGCCACAGGTCCGTTCCTGCACATAGGGGCTCTCGCTGCGGTCACAGCGTTGTCTTGGATTGTGGCTGGACAGGTCGCCCGCACAGAAAAAACAATGTTTCAGGTAGTGGTCGTGCTGCTTTATCTCAGTGTGTTACTGGGACTCTACGTGGTGCCCATGTACATCACCTCCCCCTGCATCATGGACCCCACCACCCTCAAACAACGCCCTGATGTCATTGGCCACCAGGGAGCCCCCATGCTTGCTCCAGAGAACACACTATGGTCCTTCCAGCGAGCTCTGCAGATGAATGTCACTGGGTTTGAGGCTGACGTGGCTATCAGCGTGGATGGAGTACCTTTTCTGATGCACGACCGCACCCTGCGGAGGACCACTGATGTGGAGAAGGTCTTCCCAGACAGACAAATGGAAGACGCCTCATTCTTCAACTGGACAGATCTGCAACAACTCAACGCAGGACAGTGGTTCCTCAAGGTAGTTGTTGGTTTTCACCGGAGCAGGGTCTGGTACAAGATGGCTTTCTATCATAACAGCACGGTGGTTTTCCGGCTGAGGAGACCTCCTCCAGAGCACCCCTGCTACCACAGCTGGGTCAATGATACGCTGCAGGCTGTGCAACAATCTGGGGTTCCTCAGGGTCTGGTGATGTGGACTCCAGATGAACACAGAGCTCAGGTAAGACAGCTGGCACCCGGTCTGATCCAGACCTCAGTGGAGAAACGGAGTCCTCAATTTCTCCATCAGTACGGCATCAGCCGGCTGCTGCTCAGATACAACCAGGCCAGCCCTCAGGAAATCAgAAACTTCTCCCAGAGCAACATCAACCTCACCCTTTACACCATCAATGAGCCCTGGCTGTACTCAGTGCTCTGGTGCAGTGGGGTGTCTTCAGTCTCCTCAGAGGCCTCGCATATCCTGAAAAAGGTGCCTTACCCCATCTGGCTCATGAGACCAGATGAATACTGCCTGATGTGGGTGTCTGTGGACCTCCTCTCCTTTGCTGTAGTCATAGGAATATTCATTTTCCAGAACTATCACATGATCAGGTATCGGATGAGCGGGATGCGCAGCTACAACCCTGAACAGATCATGCTGAGCGCCGCAGTCAGGAGGTCGAGCAGAGACCTCAACGTCATGAAGGAGAAACTTATCTTCTCTGAGGTGGGGAATGGAGTCGGCAGTGCTGAGGAGCTGTACGCGGACAATGGCTACGACTACTACACCAATCAGGGCATTAGCCAATGATCGGGACTGAGCCTGAGTGAATCTGCTGTAGCGAGATGGAGACGACAACGCTCTGTGTTCACATCATTCCTGTTCTAGTCTGTGTAATGtctgatctcctcctcctgtcctaGTGAATAACAGTGAATAACAGTTCCTACTGCTGTATCGGATGGAGAAAAACAACCACCCAGTTAATTTGTGTACATTCTGTAAATAGTTTTGTGTTTTGCTTTTCGGACATGCTGTTTATCACCCAGGACTGCACGCACTTTTTATTAATGGAATTTGCCAAATCTGTGGACTCGTCTCTCACACCCGAGAGGCCCCTCTGAGTTACCAAGGCCTGCTTCTTTTAAAGAGGTTTCCAGATTCTTTATTATTTTAAGCTAATTTTCCAAAGCAGTTCCTTGTTTTTAACCACTGTACATGATATTCTTCTCTCCTAGCAGGTGAATTTCCTTTATAAAGAGGCTTTTTACAAGGCTTTATTGCAGCAATAGACTAAACGCTACCGCTCATTATGCTCTTGCCTCCTGTCAGCACGCCATTGTGCGGTTGTTCTTAATAGTACTAacattaatatttatatttaaagagAGAAACGAAAAACATGAACACGCCGTTTACACAATCCTGCCTTTTCTTCCAAGTGAAATATTCACAAGGTGTATGTAAGATAATTATTTCGATAAATGCTGAATGCCCCCCCACACCTCCCTGCCCTACTTTTGACCAGTGTATGTAACCATGATGATCATGCTGACTGATATCTGTGAGCTGTGCTCCCAGAGCACCAGAAGAACAGGTGAAAACGGTTTGGGGATGAGGAGTTGTGCTGTCTGTTTATGGTTCATGTGAATGTGTTTGgacagttttcttttctttttttttaaagatgtgaacggtgtattgtgtgtattctGGCTgggtatattttttttaccccGTGTGCAGTGCTATGTTGAGTGTGTTATTGTACATAAAAGGTGAACCAGTGTGTGAGATGCTCCAGCCAACTAAGCATTACATTTGAACAACGTGACTGATGAGTAATAATTACAATAGCAATAGCCTGGTCAAGATGGAAGTCATTTGCCTTCCTACACAGCCTCTGAATTGCAGTTACCTCTGTGGTATTTAAGTGTTGACAGACAACATGCATCTAAATGTTGGTTGCTGGTGTAAAACTGACTGCTGTAAGGTAAATGAAGTAGGTgctaaatgtgaaaataaagcTCTAAGCTAATTGAAGGGACGCTACAGGTAACACAGGGTCAATAAACTGATtgccttttgtgttttctttttgtattaCTGTGCCTcagaaataaaaattaaa

Function

symbol description
gdpd5 Predicted to enable glycerophosphocholine phosphodiesterase activity and phosphatidylinositol phospholipase C activity. Predicted to be involved in positive regulation of cell cycle. Predicted to act upstream of or within several processes, including negative regulation of Notch signaling pathway; neuron differentiation; and regulation of timing of cell differentiation. Predicted to be located in membrane. Predicted to be part of axon; neuronal cell body; and perinuclear endoplasmic reticulum.

NR:

description
PREDICTED: glycerophosphodiester phosphodiesterase domain-containing protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25499 False 2143 TUCP 0.36 6 21664095 21671479
XM_039788843.1 True 3547 mRNA 0.48 17 21664076 21710363

Neighbor

gene id symbol gene type direction distance location
LOC120572601 NA coding downstream 53438 21608044 ~ 21610638 (-)
dhx40 dhx40 coding downstream 56336 21600529 ~ 21607740 (-)
akt2 akt2,LOC100707971 coding downstream 64077 21580379 ~ 21599999 (-)
LOC120553405 cntd2 coding downstream 86215 21573329 ~ 21577861 (-)
si:ch211-132b12.7 NA coding downstream 91396 21565551 ~ 21572680 (-)
gucy2f LOC103357218,LOC100708779 coding upstream 10626 21720989 ~ 21732143 (-)
mmp13b mmp13 coding upstream 44030 21754393 ~ 21758179 (-)
siae NA coding upstream 77177 21787540 ~ 21794944 (-)
srpra srpra coding upstream 333818 22044181 ~ 22053600 (-)
kcnj5 kcnj5 coding upstream 440974 22151337 ~ 22179661 (-)
G18631 samsn1,LOC102311369,LOC107374247 non-coding downstream 11210 21651703 ~ 21652866 (-)
G18591 NA non-coding downstream 80673 21527455 ~ 21583403 (-)
LOC120572042 NA non-coding downstream 131321 21529997 ~ 21532755 (-)
G18492 NA non-coding downstream 252877 21410908 ~ 21411199 (-)
G18429 NA non-coding downstream 548082 21113372 ~ 21115994 (-)
G18669 NA non-coding upstream 109626 21819989 ~ 21878764 (-)
G18758 NA non-coding upstream 437676 22148039 ~ 22148297 (-)
G18770 NA non-coding upstream 477900 22188263 ~ 22188687 (-)
G18795 NA non-coding upstream 572640 22283003 ~ 22286209 (-)
G18803 NA non-coding upstream 653908 22364271 ~ 22364495 (-)
LOC120572205 NA other downstream 48830 21610814 ~ 21615246 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other downstream 402153 21237188 ~ 21261923 (-)
si:ch1073-340i21.1 NA other downstream 566875 21094177 ~ 21097201 (-)
LOC120547993 NA other downstream 1522538 20137072 ~ 20141538 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other downstream 1853946 19800751 ~ 19810130 (-)
LOC120551419 LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978 other upstream 272939 21983302 ~ 22007175 (-)
G18885 gramd1b other upstream 1428850 23139213 ~ 23148515 (-)
G18948 LOC103474743 other upstream 1536240 23246603 ~ 23252420 (-)
LOC120574680 NA other upstream 1743184 23453547 ~ 23461044 (-)
atm atm,LOC102794456 other upstream 2019125 23729488 ~ 23758826 (-)

Expression


Co-expression Network