LOC120551419 (LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978)
Chromosome Information
Item |
Value |
chromosome id |
NC_053113.1 |
NCBI id |
CM020910.1
|
chromosome length |
48524041 |
location |
21983302 ~ 22007175 (-) |
genome version |
GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
Sequence
>TU25608
AGGAGTACAGTCGGGTGTTTAGTGTTTACTTTTGGACAACTAACGTTAGGCTATACTAACGCTAGCTTCCCCTGACATCAGATACTGGTCACACTAGCTAGTTTAACATTCATTTTTCAtagacatgtttagttttttgaattAGTAATCCCGGAAGTAACGATACGAATAATTTAGCGTTGTGTACTTATGGGGTAGCTCAACTTCACTGGCGTTATCATATCATTTTTGCGAAACTGGAATAACGTTAGCCTATGTTAGATGTGACATAACCGTATACATTGAGATAACGGGATTCTAGTCCACATCGGAAAGAAAAAGATAACGTTATGTACTTTAAGTCGCGTTTAAACAAGAAACGTTCATACTTAAGTTGTGTTGTTATTGCCAATGGAAAGCTTATCGATGGTCAGGCTTCGTCTGACCCTAAAGCAAAGATATTTTCTCCTGCTGTGTTTTGCCGTCGGAGCGATCATTGCCTATCAGTTTACAAGGAATCGCCTTGAAGTAGAAAGAATGAGCCGTGTGGAGGGTCTGAGGGCCAACTCGTCTCAGTTCACTCTGGAGAGAAAACCCTTCCACATCCTGGGGGGGTCCATCCATTACTTCCGTGTCCCCAGAGCCTACTGGGAGGACCGGCTGCTAAAGATGAAGGCCTGTGGCCTCAATACTCTCACAACGTATGTGCCGTGGAACCTGCATGAGCCTGAGCGAGGGGTGTTCAACTTTGAGGATCAGTTGGATTTAGAAGCCTACCTCCGCCTTGCAGCCAGCTTGGGCCTCTGGGTGATTCTACGTCCAGGGCCGTACATCTGTGCTGAGTGGGATTTAGGGGGACTACCCAGttggCTGCTACGGGATCAAAACATGAAACTAAGAACAACCTACCCAGGATTCACTGCTGCAGTCAACTCCTTCTTTAATCAACTCATGAAGAAAGTTGTTCCACATCAGTACTCCAAGGGTGGCCCAATTATAGCAGTTCAAGTGGAGAATGAATATGGCTCCTTTGCTAAAGATGAAGATTACATGCCTTTCATCAAGGAGGCATTATTGTCAAGGGgcatcacagagctgctgctgaCCTCAGACAACAGGGAAGGACTAAAGCGTGGCGGAGTGAAAGGAGCACTAGAAACCATCAATTTCCAGAAACTCAACCCGAATGACATCAAGTGTCTGGATGGAATACAACCTAACAAGCCTAAGCTGGTGATGG
>XM_039788856.1
CTACAGGAGTACAGTCGGGTGTTTAGTGTTTACTTTTGGACAACTAACGTTAGGCTATACTAACGCTAGCTTCCCCTGACATCAGATACTGGTCACACTAGCTAGTTTAACATTCATTTTTCAtagacatgtttagttttttgaattAGTAATCCCGGAAGTAACGATACGAATAATTTAGCGTTGTGTACTTATGGGGTAGCTCAACTTCACTGGCGTTATCATATCATTTTTGCGAAACTGGAATAACGTTAGCCTATGTTAGATGTGACATAACCGTATACATTGAGATAACGGGATTCTAGTCCACATCGGAAAGAAAAAGATAACGTTATGTACTTTAAGTCGCGTTTAAACAAGAAACGTTCATACTTAAGTTGTGTTGTTATTGCCAATGGAAAGCTTATCGATGGTCAGGCTTCGTCTGACCCTAAAGCAAAGATATTTTCTCCTGCTGTGTTTTGCCGTCGGAGCGATCATTGCCTATCAGTTTACAAGGAATCGCCTTGAAGTAGAAAGAATGAGCCGTGTGGAGGGTCTGAGGGCCAACTCGTCTCAGTTCACTCTGGAGAGAAAACCCTTCCACATCCTGGGGGGGTCCATCCATTACTTCCGTGTCCCCAGAGCCTACTGGGAGGACCGGCTGCTAAAGATGAAGGCCTGTGGCCTCAATACTCTCACAACGTATGTGCCGTGGAACCTGCATGAGCCTGAGCGAGGGGTGTTCAACTTTGAGGATCAGTTGGATTTAGAAGCCTACCTCCGCCTTGCAGCCAGCTTGGGCCTCTGGGTGATTCTACGTCCAGGGCCGTACATCTGTGCTGAGTGGGATTTAGGGGGACTACCCAGttggCTGCTACGGGATCAAAACATGAAACTAAGAACAACCTACCCAGGATTCACTGCTGCAGTCAACTCCTTCTTTAATCAACTCATGAAGAAAGTTGTTCCACATCAGTACTCCAAGGGTGGCCCAATTATAGCAGTTCAAGTGGAGAATGAATATGGCTCCTTTGCTAAAGATGAAGATTACATGCCTTTCATCAAGGAGGCATTATTGTCAAGGGgcatcacagagctgctgctgaCCTCAGACAACAGGGAAGGACTAAAGCGTGGCGGAGTGAAAGGAGCACTAGAAACCATCAATTTCCAGAAACTCAACCCGAATGACATCAAGTGTCTGGATGGAATACAACCTAACAAGCCTAAGCTGGTGATGGGGTTGAATAGTGTGAAACCATTGGCAGGACTGCGTATCATGTCACCCACTTACGGTGGTGGAAAGATTCAGatccttaaaggtgctgtagACATGATACCTGTGGTCACAGAGATCCTTAAACTGGACATGTCTATCAACCTCTACATGTTCCACGGAGGGACAAATTTTGGCTTCATGAGTGGAGCGTTTGCTGTTGGAATGCCAGCACCTAGACCTATGGTCACAAGCTACGATTACGATGCTCCATTATCCGAGGCTGGGGATTACACCACCAAGTACCATCTTCTGAGGAATTTATTCAGCCACTACCACGCCCAGCCTCTACCTGAACTGCCCTCTCATCAGGAAAGGAGAGCGTACCAGCCTATTGTCATCCACCAGCACCTGTCTCTGTGGGACAGTCTGCATTTCACTGACAAGCCATTGAAGTCAGAGAGGCCGATGAACATGGAGAATCTCCCTGTCAACAATAACAATGGTCAGTCTTATGGCTATACACTGTATGAGACCACCATGACCAGCAAAGGAACCCTCAACTCAAAGAACAACATCAGAGACCGAGCACTGGTTTTTGTGGACAAACATTTTGTTGGTGTTCTGGATTATGAGACGCAAGAACTTCCACTCCCTGATGGGAAgGGAAAAAGAACTCTAAGTTTACTGGTTGAGAACTGTGGAAGAGTGAATTATGGGAAAACCCTGGATGACCAGCGCAAAGGTCTTGTGGGAGATATCGAGTTAAACAAGCGCCCCCTCAGTGACTTCATTATTCGCAGTCTGGATATGAAGCCAGGCTTTGTAAACAGACTTGAGAGTTCAGGCCACTGGATGTCTATGCGTCAGCGGCCCTCCTTCCCAGGGTTTTTCCAGGCCAGACTCTATGTGAACAGTTTTCCTAAAGACACTTTCATCAAGCTCCCTGGCTGGAGCAAAGGTGTAGTGTTTATCAACGGCAAGAATCTGGGTCGCTACTGGTCCATCGGTCCTCAGCAAACCCTCTACGTCCCAGGTCCCTGGCTTCACAAGGGGGACAACCAGGTCATAGTGTTTGAAGAGCAGGAAACAGATGGGAAGATTCAGTTTGCCAGCAGTCCGGACTATGGCATGACAGTTGATGTCCAGTGAGGACACGAGGCGAGAGGGGAGCGTGGATGAAGAGAGGAGGATGATGGGAGAGTAGCTGGGGAGAACACAATTGAGGCGATTGCCCCAAGCTTTGTATACTCAGGCACTGACACCCCCAGAAGTGGCACATGTCAGTCAGTGAACATGTTATTTTGTGTCCTATCAGAAGACACCAACACAGCAGTGTTACAGACCACTTTTTCATTTAGTGACTGTATTTATGAAATTCTTTAAATTCTTTTTGTTCAATTTAGTAACATTATCATTAACCTGCATTAAAACTTCATAATTGGAGACCATTGGACTTTGTTTGATTATAATAAAATGTTGTAAAATATCTTCCTCCCACagtattcatttttaaattgcaGGCTGTGTTAAAAGAACTGTAAATAAAGGCGGGTTCAACCTCTGTGTCATTAA
Function
NR:
description |
PREDICTED: beta-galactosidase-1-like protein 2 isoform X1 |
GO:
id |
name |
namespace |
GO:0005975
|
carbohydrate metabolic process |
biological_process |
GO:0004565
|
beta-galactosidase activity |
molecular_function |
KEGG: NA
RNA
RNA id |
representative |
length |
rna type |
GC content |
exon number |
start site |
end site |
TU25608 |
False |
1219 |
TUCP |
0.58 |
9 |
22001904 |
22007171 |
XM_039788856.1 |
True |
2773 |
mRNA |
0.46 |
20 |
21983302 |
22007175 |
Neighbor
gene id |
symbol |
gene type |
direction |
distance |
location |
siae |
NA
|
coding |
downstream |
188358 |
21787540 ~ 21794944 (-) |
mmp13b |
mmp13
|
coding |
downstream |
225123 |
21754393 ~ 21758179 (-) |
gucy2f |
LOC103357218,LOC100708779
|
coding |
downstream |
251159 |
21720989 ~ 21732143 (-) |
LOC120572601 |
NA
|
coding |
downstream |
372664 |
21608044 ~ 21610638 (-) |
dhx40 |
dhx40
|
coding |
downstream |
375562 |
21600529 ~ 21607740 (-) |
srpra |
srpra
|
coding |
upstream |
37006 |
22044181 ~ 22053600 (-) |
kcnj5 |
kcnj5
|
coding |
upstream |
144162 |
22151337 ~ 22179661 (-) |
fli1 |
fli1,LOC106612965,LOC103145351,LOC106905187
|
coding |
upstream |
192959 |
22200134 ~ 22233779 (-) |
smtla |
NA
|
coding |
upstream |
340136 |
22347311 ~ 22352582 (-) |
LOC120551448 |
NA
|
coding |
upstream |
781869 |
22789044 ~ 22799012 (-) |
G18669 |
NA
|
non-coding |
downstream |
104538 |
21819989 ~ 21878764 (-) |
G18626 |
NA
|
non-coding |
downstream |
287580 |
21632980 ~ 21695722 (-) |
G18631 |
samsn1,LOC102311369,LOC107374247
|
non-coding |
downstream |
330436 |
21651703 ~ 21652866 (-) |
G18591 |
NA
|
non-coding |
downstream |
399899 |
21527455 ~ 21583403 (-) |
LOC120572042 |
NA
|
non-coding |
downstream |
450547 |
21529997 ~ 21532755 (-) |
G18758 |
NA
|
non-coding |
upstream |
140864 |
22148039 ~ 22148297 (-) |
G18770 |
NA
|
non-coding |
upstream |
181088 |
22188263 ~ 22188687 (-) |
G18795 |
NA
|
non-coding |
upstream |
275828 |
22283003 ~ 22286209 (-) |
G18803 |
NA
|
non-coding |
upstream |
357096 |
22364271 ~ 22364495 (-) |
G18810 |
NA
|
non-coding |
upstream |
425378 |
22432553 ~ 22432962 (-) |
gdpd5b |
gdpd5,LOC103357216
|
other |
downstream |
272939 |
21664076 ~ 21710363 (-) |
LOC120572205 |
NA
|
other |
downstream |
368056 |
21610814 ~ 21615246 (-) |
slc6a4a |
slc6a4,LOC103359260,LOC108228506
|
other |
downstream |
721379 |
21237188 ~ 21261923 (-) |
si:ch1073-340i21.1 |
NA
|
other |
downstream |
886101 |
21094177 ~ 21097201 (-) |
LOC120547993 |
NA
|
other |
downstream |
1841764 |
20137072 ~ 20141538 (-) |
G18885 |
gramd1b
|
other |
upstream |
1132038 |
23139213 ~ 23148515 (-) |
G18948 |
LOC103474743
|
other |
upstream |
1239428 |
23246603 ~ 23252420 (-) |
LOC120574680 |
NA
|
other |
upstream |
1446372 |
23453547 ~ 23461044 (-) |
atm |
atm,LOC102794456
|
other |
upstream |
1722313 |
23729488 ~ 23758826 (-) |
slc33a1 |
slc33a1
|
other |
upstream |
1795340 |
23802515 ~ 23809452 (-) |
Expression