G18911 (polr2i,rpb9)


Basic Information

Item Value
gene id G18911
gene name polr2i,rpb9
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 23178636 ~ 23180583 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU25842
CTCGGGAGTGTTGGATCCTGAGATACATCAGCAATGATTTGTGTCAActcaTCAACCTCGTGGGTGATCTTGTTGACATAGATGCAGCTGTTGTCTGCCTCTTGTTGGTAGTCACAATTCCTGCACGCATAAAGCAGGATACGGTTCTCCTTGTCTTCTTTGGGGTATAACATGTTGTTACATTCTTGACAAAACCGTATTCCAACAAATCCTGGTTCGTACGTTCCAGGTTCTAAATCCATTAGAAAAACTATATGTTAAAGCAAAcctgaaaaataataaatgcgATTCCCTTCTTCTACCGCCTCTATGGCTTCCTACGCTCGTTTGAAAACAGaccgtcttcttcttcttcttctggctTTCCGGCAGACTAGAAGGCTTGCGGCAAATTGCTGCCTCTCACAGGACAGTTTAAGTAACATTCGAAAGTATTGTCAAAGTCAGTGGAGTAGTCCTGTTCTCAAATCTCAAATTGATATTCAGGGGGATTTAGTAAGAATCTCAATGTCATGTTTTATATTCCCATGTAACATAGCGCAGTGAACAACTGCTCTCTTTCATTTTTGTATTGAAGACAGTCCAAAAGTACATGTTGAacagtttgtttctgtttgcaGGTTCAGACTTTTTAATAATGAGGCTGTGAACATATGACCGCTCTCCTTtgcagtacttcctccacccaCTGTAGTGCCAAAATTATTATAGCTATTAGCTCTCTCTCCTTTGAGCTGTACAATTTCAAGTTGAGGAATATAAAAAGCAAAGCCCCACTTCCCAGTTTGTGGATCTTGAGATCCATCTGTGTAAATCTGAAGATATGTCTCCCAATGCTTACCCAGTCTTTTTTTAAC

Function

symbol description
polr2i Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter; transcription initiation from RNA polymerase II promoter; and transcription-coupled nucleotide-excision repair. Predicted to act upstream of or within mRNA cleavage and transcription, DNA-templated. Predicted to be located in nucleolus. Predicted to be part of RNA polymerase II, core complex. Orthologous to human POLR2I (RNA polymerase II subunit I).
rpb9 Contributes to RNA-directed 5'-3' RNA polymerase activity. Involved in maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter; transcription initiation from RNA polymerase II promoter; and transcription-coupled nucleotide-excision repair. Part of RNA polymerase II, core complex. Orthologous to human POLR2I (RNA polymerase II subunit I).

NR:

description
PREDICTED: DNA-directed RNA polymerase II subunit RPB9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25842 True 857 lncRNA 0.40 4 23178636 23180583

Neighbor

gene id symbol gene type direction distance location
lbhl LOC102301737,LOC102196385,LOC100690809,LOC103154600,LOC108238121,LOC106945137 coding downstream 9429 23162202 ~ 23169207 (-)
LOC120546095 NA coding downstream 16558 23159296 ~ 23162078 (-)
rbm7 rbm7,LOC104959492 coding downstream 296183 22875065 ~ 22882453 (-)
barx2 barx2 coding downstream 307046 22860951 ~ 22871590 (-)
LOC120551448 NA coding downstream 379624 22789044 ~ 22799012 (-)
cfap45 NA coding upstream 98019 23278602 ~ 23283802 (-)
trappc4 trappc4 coding upstream 108813 23289396 ~ 23291463 (-)
sacs sacs coding upstream 134475 23315058 ~ 23341092 (-)
LOC120554161 mipep coding upstream 196511 23377094 ~ 23409078 (-)
brwd1 NA coding upstream 229237 23409820 ~ 23446831 (-)
G18905 NA non-coding downstream 2922 23175464 ~ 23175714 (-)
G18896 NA non-coding downstream 22132 23155941 ~ 23156504 (-)
G18883 NA non-coding downstream 40377 23137650 ~ 23138259 (-)
G18868 NA non-coding downstream 57702 23044749 ~ 23120934 (-)
G18841 NA non-coding downstream 362656 22815781 ~ 22815980 (-)
G18923 NA non-coding upstream 15085 23195668 ~ 23196344 (-)
LOC120546850 NA non-coding upstream 36183 23216766 ~ 23234546 (-)
G18943 NA non-coding upstream 52930 23233513 ~ 23236846 (-)
G18963 rps25 non-coding upstream 111158 23291741 ~ 23294502 (-)
G19018 NA non-coding upstream 166854 23347437 ~ 23351424 (-)
G18885 gramd1b other downstream 30121 23139213 ~ 23148515 (-)
LOC120551419 LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978 other downstream 1171461 21983302 ~ 22007175 (-)
gdpd5b gdpd5,LOC103357216 other downstream 1468273 21664076 ~ 21710363 (-)
LOC120572205 NA other downstream 1563390 21610814 ~ 21615246 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other downstream 1916713 21237188 ~ 21261923 (-)
G18948 LOC103474743 other upstream 66020 23246603 ~ 23252420 (-)
LOC120574680 NA other upstream 272964 23453547 ~ 23461044 (-)
atm atm,LOC102794456 other upstream 548905 23729488 ~ 23758826 (-)
slc33a1 slc33a1 other upstream 621932 23802515 ~ 23809452 (-)
G19140 gmps,LOC102797084 other upstream 643238 23823821 ~ 23827954 (-)

Expression


Co-expression Network