G19264 (ccnl1)


Basic Information

Item Value
gene id G19264
gene name ccnl1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 24170761 ~ 24178876 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU26295
GTGGACTCTTGTTGATCTGAGTCCGGCTGTCTGGATCCTTCTTAACTGGTTTGAGGGTCTGGGGGTTTGGGGACTTTTCTTCCACCTTGACCACATTTGGGGAGCAGGGCTTGGAAGCAGGAGAGAAGCCACCCAGTGTGGACAGTGCAGGGGTACCATCAGGGTTCAGGCCTTTAGCCTTCAGCTTGACCTCTGCCAAGAACACCTTCCTCCGCTCTACCTCTTTCTCCAGCTGGTCATAGTTGGGcttCTTCCTGGTGTAGAGTTTAAGGGTGGTGATGCAGACCTCTTTAACATCGTCatcactggctccaaaaagcaGGTACCAATTAGGTTTGGATGGCAGAGGTATCTGCAGGGCTCGGGCAGCGAGGAATATGCAGGCACAGGCAATAGTCTCGGCTTGGAATCTCACAAACACATTTGTCCGCAGGGTATCATTCATGTAGTTCCAGGCCGTCTGGACCAGTGTCTGGTTCTTCTCACATTCCAGGACTTGAAGGTACATGACGATAATCTTGTGAGGATGCTTGACATGCACACAGAAGCCCAGCTCCTTCAGGACCCGCCGTTCCGCTTTGATGACTTGGTTTTTGGTATTTATGTAGTTCTGATCAAGTATCAATGAACTTGGAGTCCTGGTTTATAAaggaatcaaaataaaataaagtttcccCCTTTcgaaataaaagtaataaaagaaAGTGCCCTTTTGATTCTTgcactcttttctttttcccattCCAACCAACTAAAAGCAACAGGTTTAAGTGTTTGCATGCCTGACAGTTTGCTGGGGTCTGTGGACTCCTGTGGTTCTAGTGAAAGCATATGggatttgtagacagccctcaACCTCATTCACACTGTATCACAGCTTTAACAGAAATATCAACTCAAGACCATTGGCCACATCACTACCTCAACACGCAACtcaaattaaacacaaaaccaCTATGAGTCACAAATCATCCTCACCTATtctaatgtactgtatacatcaGTATAATTAATTCTCTTAACTAACCAAAACCACTGACTGCTTGACTTGTTAATAGTGCAGAACGATATCTAGACTCAAAGAAGATATCAGAAAAATACAGTTCTTTGTCCAATGACTACATTTTGACTGAAGAATACTGTACCAGTCTAGAAAACATCTGCTGGTTGAACACAGCAGATTTAAATACTACTGATGCAGACAAAACACATCTACATATTGTTATAGTTTTATAGCAATCATTAAATGCTACAACTTTCTAAAATTAAAAACTTGGATTAGATGCATTATGATCTCAGTTTGAACTATCAGCCTCCTACTTTATGTACCATTTACTATATATGAGCTACATCACAGTAACAGATTAAACCTAACTTTAGAAAAACAGACTGACATCCTTCTAACATTTATTAGTAATAGTAATTTAGCTTATTTTACAGAACCAACTATCAAATTTCAAATCAAAATCTAGAGTTCTGATGTCTCAAATAAAGTaaattttaaatgtgaatactgCCATGCTACAAACCACATGCATGGTAAAAACTATCAGTGTGATGTCTATTACTTTACATGTCTAAATCCACATCTAAATAACAGAGTTGCTACAGGTGCATCAAGGTTACCGGTACATTAACTTTAATTCCAATTCAAACAACCTACAGATAATTCCAAACTACTAAAAGCTAAAGTCCATGCACTGACcctaaacaaaaacataacctgCATGGTATTCAATTAATTATCCTAACTTCAACGAACAAGGAGATATTTCTAGTAAAGCCATGGTAACAGGTGGTGAACGGGGTTTTACTCTTGGAGCACAAACAAAATGCATGGTGAGGAGCAGTCAGTGAAGAAGACTACATTACCCAATGGTCCACAGATTGAAGGACAGATACCAAAAGCTTAAGATTGAACCACAGGAGTCCTCAAAGCGCCCCGGGGGCCAAGGACCTTCGGCCAACCTGTCATCCCTGATCCCAGTGCCCCACGGTGGCTCAGACCACGGGCGTCTCCCACTGGAGGGGGTGGGTTGGCCCTGCATCATGGTTGTCATGCCGACTGCTTCATCTTACGTACCATTCCACATCACCCAGGCTTTGGTAAATGTAGC

Function

symbol description
ccnl1 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in nucleus.

NR:

description
PREDICTED: cyclin-L1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26295 True 2117 lncRNA 0.43 5 24170761 24178876

Neighbor

gene id symbol gene type direction distance location
ssr3 ssr3,LOC106581450 coding downstream 206294 23960754 ~ 23964467 (-)
tubd1 tubd1,LOC102795212 coding downstream 377785 23788779 ~ 23792976 (-)
dscamb dscam,LOC103377590 coding downstream 477384 23574700 ~ 23693377 (-)
LOC120553253 NA coding downstream 718343 23449151 ~ 23452418 (-)
brwd1 NA coding downstream 723930 23409820 ~ 23446831 (-)
veph1 veph1,LOC106613251 coding upstream 12595 24191471 ~ 24281835 (-)
LOC120551456 LOC102079500,LOC107380520,LOC101465397 coding upstream 148590 24327466 ~ 24331196 (-)
serpini1 serpini1 coding upstream 157181 24336057 ~ 24355496 (-)
si si,LOC107380514 coding upstream 646147 24825023 ~ 24921452 (-)
slitrk3a slitrk3,LOC102777956 coding upstream 771499 24950375 ~ 24958185 (-)
G19224 NA non-coding downstream 5463 24165078 ~ 24165298 (-)
G19191 NA non-coding downstream 139508 24028627 ~ 24031253 (-)
G19189 NA non-coding downstream 144077 24026218 ~ 24026684 (-)
G19158 NA non-coding downstream 186303 23984071 ~ 23984458 (-)
G19137 gmps,LOC102797084 non-coding downstream 352323 23817565 ~ 23818438 (-)
G19272 NA non-coding upstream 24193 24203069 ~ 24220121 (-)
G19281 NA non-coding upstream 129798 24308674 ~ 24368043 (-)
LOC120547017 NA non-coding upstream 135711 24314587 ~ 24327037 (-)
G19293 NA non-coding upstream 218933 24397809 ~ 24398780 (-)
G19319 NA non-coding upstream 436670 24615546 ~ 24615779 (-)
G19140 gmps,LOC102797084 other downstream 342807 23823821 ~ 23827954 (-)
slc33a1 slc33a1 other downstream 361309 23802515 ~ 23809452 (-)
atm atm,LOC102794456 other downstream 411935 23729488 ~ 23758826 (-)
LOC120574680 NA other downstream 709717 23453547 ~ 23461044 (-)
G18948 LOC103474743 other downstream 918341 23246603 ~ 23252420 (-)
G19270 ptx3 other upstream 69155 24248031 ~ 24252913 (-)
trip12 trip12 other upstream 1862419 26041295 ~ 26089702 (-)
LOC120570356 ypelc,ypel2,LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438,LOC107599611,LOC101078269,LOC104940871 other upstream 2128188 26307064 ~ 26334719 (-)
LOC120570434 fam124b other upstream 2255405 26434281 ~ 26445935 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other upstream 2272504 26451380 ~ 26469896 (-)

Expression


Co-expression Network