G19270 (ptx3)


Basic Information

Item Value
gene id G19270
gene name ptx3
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 24248031 ~ 24252913 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU26301
CAATAAGTGACCATTATACGGATGGCCCATACATAAGTTAAGGGAAAAGGATAGTTTGCTACTTGAGGAGGACATGTCTGGAGACATAATAGACAGACTATGTGGTAAAGGTATTTGGGACGAACACAAGCTGCATGATTAGTTGTTGGACGTTCAGAAGCAAGGCCTGACAGGGGGGGGTCTCATTCTCTTAAATTTTTTTAGCGTGACTTTAATGTACAAAGCAGCAGGtaatgacagacacagagcacaGATTGCTGATGGTAAGATGGATATCTCACCTGCCGGTAGGTATCTTTGCCTCAATGACCTCAGTACCTCCCCCAGTTGCACCCTCGTCTCTTGCAGCACAGCCAGCACCCCGTCTAAAGCCACCTCTTGTGATGTGACCTCTTGCTCCCGGAGCCGTGCCCCTTCACCTTCTGGAAGCTGGGATCCTGTCTTTGAATTCATGCCCATCCCAGCTCCTGGGCTACTGAAGCAGCTGGTCTCCAGCTTGGCGAGTCGGgaagtttgtgtttgtgctgcGGAGAGGAGCTGCTGCAGCATCGCCTCCAGGTGGTTAGAATTCCCAACAGaattcccagcagcagcaaaagTGTGATCTCTGGATTTGAGGCGCTCCAGGGTTTCTCTTAGGCGGCCCTCCAGCTGCAAGGCCATCCTTCTTCCTGCTGTCTCCACTGCAACCCCACAGGTGCCACCATACTGCGCTACAAACCTGAGCATTTCTCCACGCAGTGACCCCATCTCCACCTTAATAATGTCATCTGCATACTGAAGCAACATGTTCTCCCTCATCTGACTGTTCTCCAGCATGGAGAAGATTTTGTCCCATTTGGTCAGGTCTGGAGAGTTGCAGGGGGCTGGACTCGGTGTGGGTTCTGGTGTCTCTCCATCTGTGATTTCATTGTAGTAGGTGTCAGCGTAGTTGACCTCAAAATCCTCCTCATATGCAagaaccagacacacacacactgacagcacacacactgtctgGGGGAGCCTCCACCGgaacatgctgctgctgctgctgctgccgacTCAGTGTGTGAGAGTAAGAGTATATGAGGTTGAATGAGTGTGATAAGTGGTGAGTTTCAGGTCCGCTCTTCTGCCTACCTgcttgtcagtgtgtgtgtgtgtgtgtgtgtatgtgtgtttagattgactgtgtgtgttttgtttgtctctGCTGCTTCTCCCTGTCGGTCTCACAGCGCTGCAGGTCCAC

Function

symbol description
ptx3 Enables complement component C1q complex binding activity; identical protein binding activity; and virion binding activity. Involved in innate immune response; modulation by host of viral process; and negative regulation of viral entry into host cell. Located in extracellular space. Implicated in cystic fibrosis and invasive aspergillosis. Biomarker of hepatitis C; invasive aspergillosis; pelvic inflammatory disease; pulmonary aspergilloma; and toxic shock syndrome.

NR:

description
PREDICTED: pentraxin-related protein PTX3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26301 True 1234 TUCP 0.46 3 24248031 24252913

Neighbor

gene id symbol gene type direction distance location
ssr3 ssr3,LOC106581450 coding downstream 283564 23960754 ~ 23964467 (-)
tubd1 tubd1,LOC102795212 coding downstream 455055 23788779 ~ 23792976 (-)
dscamb dscam,LOC103377590 coding downstream 554654 23574700 ~ 23693377 (-)
LOC120553253 NA coding downstream 795613 23449151 ~ 23452418 (-)
brwd1 NA coding downstream 801200 23409820 ~ 23446831 (-)
LOC120551456 LOC102079500,LOC107380520,LOC101465397 coding upstream 74553 24327466 ~ 24331196 (-)
serpini1 serpini1 coding upstream 83144 24336057 ~ 24355496 (-)
si si,LOC107380514 coding upstream 572110 24825023 ~ 24921452 (-)
slitrk3a slitrk3,LOC102777956 coding upstream 697462 24950375 ~ 24958185 (-)
LOC120573181 LOC104958666 coding upstream 789851 25042764 ~ 25050773 (-)
G19272 NA non-coding downstream 27910 24203069 ~ 24220121 (-)
G19264 ccnl1 non-coding downstream 69155 24170761 ~ 24178876 (-)
G19224 NA non-coding downstream 82733 24165078 ~ 24165298 (-)
G19191 NA non-coding downstream 216778 24028627 ~ 24031253 (-)
G19189 NA non-coding downstream 221347 24026218 ~ 24026684 (-)
G19281 NA non-coding upstream 55761 24308674 ~ 24368043 (-)
LOC120547017 NA non-coding upstream 61674 24314587 ~ 24327037 (-)
G19293 NA non-coding upstream 144896 24397809 ~ 24398780 (-)
G19319 NA non-coding upstream 362633 24615546 ~ 24615779 (-)
G19320 NA non-coding upstream 397654 24650567 ~ 24651550 (-)
G19140 gmps,LOC102797084 other downstream 420077 23823821 ~ 23827954 (-)
slc33a1 slc33a1 other downstream 438579 23802515 ~ 23809452 (-)
atm atm,LOC102794456 other downstream 489205 23729488 ~ 23758826 (-)
LOC120574680 NA other downstream 786987 23453547 ~ 23461044 (-)
G18948 LOC103474743 other downstream 995611 23246603 ~ 23252420 (-)
trip12 trip12 other upstream 1788382 26041295 ~ 26089702 (-)
LOC120570356 ypelc,ypel2,LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438,LOC107599611,LOC101078269,LOC104940871 other upstream 2054151 26307064 ~ 26334719 (-)
LOC120570434 fam124b other upstream 2181368 26434281 ~ 26445935 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other upstream 2198467 26451380 ~ 26469896 (-)
G19840 NA other upstream 2835693 27088606 ~ 27089064 (-)

Expression


Co-expression Network