G20348 (LOC104922853,LOC102220912,LOC103367115)


Basic Information

Item Value
gene id G20348
gene name LOC104922853,LOC102220912,LOC103367115
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 29359442 ~ 29360927 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU27668
TGGCTGTTGAAGAATTTTCAAGGGATGGTTAACAGCATGGCAAGCCTGATCCCTTTGCGATTCCCTCCTGTTAGCCCACAGTCTGCAGGACTCCTCTCTATGCGGTCATCTCGAAGCAGCCCCTGCGGTGTGTCTGCATGTCTCTCACCCTACGGATGGACTGGATCTGGGGCTGGTGGGCTCCCCACTCGTTCCAGTGCTTGAAAGGGCCCATCTCAAACACATACTGGTAGCCACGGTAGCCTGGGTACTGGTAGCCCACCCAGGTTCCACCGGTGACCTGAATGCTGGCAACACGATCCTGGAAGCCGTAAGACCACAGGCTTGGAATATCCTCATCGCACACCTCCATCTTACGACCCTCGAAGTTTGGACATTCGTACAGGCAAATCTTGTGATCCTGGGCATCCATTCTGACGGGCCTGACTGACATGAAGCGATCACACCTGTAGCTGTTGGACCAGGTGTCCCAGCGGGGATAGTCTCCCTTCTCCAGCATGAACATCTCACCAGTCATGTTCTGCTGCTCATAACCCACCCAGGGTCCACACTCGACCCTGATGGAGCCGATTTTTTCGAAACCCTTCTCACACAGGTTACGGCACTCTCCGAACAGGTCCATCCTACGGCCTTGGAAGTTCTCATATTCATAGAGGTAGATCTTGTGATTGCGCATTCCAATGGCAGAGTGGCTGCCAATGCTAC

Function

NR:

description
PREDICTED: beta-crystallin B1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27668 True 705 lncRNA 0.54 5 29359442 29360927

Neighbor

gene id symbol gene type direction distance location
cryba1a cryba1,LOC108246057,LOC105936483,LOC103145583,LOC104943196 coding downstream 4101 29352325 ~ 29355341 (-)
cpda cpd coding downstream 12019 29329368 ~ 29347423 (-)
gosr1 gosr1 coding downstream 32927 29303285 ~ 29326515 (-)
LOC120551002 LOC103361980 coding downstream 220180 29084966 ~ 29139262 (-)
LOC120550711 LOC104943185,LOC103361979,LOC102792505 coding downstream 286323 29025813 ~ 29073119 (-)
foxn1 NA coding upstream 25177 29386104 ~ 29407183 (-)
LOC120553635 sarm1,LOC102788660 coding upstream 97307 29458234 ~ 29464232 (-)
LOC120545693 scarf1 coding upstream 108166 29469093 ~ 29477554 (-)
LOC120545703 rilp,LOC104966718 coding upstream 116966 29477893 ~ 29490644 (-)
prpf8 prpf8 coding upstream 130237 29491164 ~ 29508379 (-)
LOC120573394 NA non-coding downstream 61020 29297340 ~ 29298422 (-)
G20335 NA non-coding downstream 113220 29244487 ~ 29246222 (-)
G20331 NA non-coding downstream 193724 29165513 ~ 29165718 (-)
G20287 NA non-coding downstream 275403 29078933 ~ 29084039 (-)
G20289 NA non-coding downstream 324576 29032855 ~ 29034866 (-)
G20350 unc119 non-coding upstream 2002 29362929 ~ 29382291 (-)
G20407 NA non-coding upstream 72128 29433055 ~ 29434006 (-)
G20408 NA non-coding upstream 82410 29443337 ~ 29468887 (-)
G20425 tlcd2,LOC107103571,LOC104967200 non-coding upstream 171639 29532566 ~ 29553100 (-)
G20431 NA non-coding upstream 192387 29553314 ~ 29553568 (-)
cwf19l2 cwf19l2 other downstream 1511894 27824605 ~ 27847548 (-)
G19840 NA other downstream 2270378 27088606 ~ 27089064 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other downstream 2889546 26451380 ~ 26469896 (-)
LOC120570434 fam124b other downstream 2913507 26434281 ~ 26445935 (-)
LOC120570356 ypelc,ypel2,LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438,LOC107599611,LOC101078269,LOC104940871 other downstream 3024723 26307064 ~ 26334719 (-)
G20417 scarf1 other upstream 86243 29447170 ~ 29448655 (-)
im:7138535 NA other upstream 606502 29967429 ~ 29972350 (-)
rnf26 rnf26 other upstream 726808 30087735 ~ 30091711 (-)
cbl cbl other upstream 793966 30154893 ~ 30198071 (-)
arhgef12a arhgef12 other upstream 1207946 30568873 ~ 30618434 (-)

Expression


Co-expression Network