G20480 (pafah1b1,LOC106581047)


Basic Information

Item Value
gene id G20480
gene name pafah1b1,LOC106581047
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 29653143 ~ 29656085 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU27851
TGTAGTGTAACTTTGTCTGAGTGTAGCCCTCAAGAAAGAGGTCTGAGCGGTCTTTTACCTCGGAGCCTGTGGCCTCTTGGATGGTGGGGTGGGCGCTCTCTGGTGCCCAGGAGATGCACTCCACCACATGTTCGTGTTCCCGCAGCTCAGCCTTGCAGTCTTTGGAGGCCACGACCCACACACGCACTGTTTGGTCGTTGGAGCAGCTGGCAATCAGTGTGCCGTCCTGGTTGGGCCGCACCATACGGACCCACTCCCTGTGGCCTGTGAAGGTCTTCACACAGTAGCCAGTTGCCACCTCCCACATTTTTATGGTTTTGTCCCTTGAGGCAGAAACAATGTGATCTCCATTGGGCATGATGGCTACAGACGAAACATTGTGGTCATGTCCATGCATGGTCCTGATGCACTCAAAGCCTTGGAAATCCCACAGCTTGATAGTCATGTCTGCAGAGCAGGATGCTAGCAGTTTTCCGGTTTGGTCAAAAGAGATGTCCTGCACCGAATCTGTGTGGCCCTTCAGTGTGCGTTCAAAGTCTCCTGTCTCATAGTCCCACACCTGGAGAAGAGAACATATTCAAACATTAGCTTTAGAGAAACCTACGTATAAGAGaacatacatattttattaagtCTGTATATTACTGAGAAACACGTGTATGCTCTTCATTTAAAACTGAATCCCTTTCCCAGTAAAGCCCACAAATGTCACATCATCTGTGGCCCCATGTCAACTCAGCTGGACAGTCCAGCAGCCAAAACAAGCTGAGAAGAGAGAACCAAGCTGTCCAGAGCAGTCATATGACAATCGCTACCAAAAAAAAGATATGGTGATGGCCGAACGCTTAAAATTACCATACTGCAATAACATTCACCTTAAGAGCTCAGATAGGCCTCAGTTTGCAGACACCACACACTCTTTGTATATTGGATTACAGAGTCTGTGATGCATAGCTGTTGCTAGTGGCAGAGATGCATGTGCCAGGAGGCTGATTAGGGTTACAGTTAGGTCTGATAAAAACGGATAGATAGTTTATTGTGCGGAGTATGACACTGCCAGCTGGAGTACAGACAGAATATAGAGTGTACAATAGTAAGCCTAATTTTCTAGCCTGAGAAAGAGGTTACATTTCTAGATTTCGAAGCAGACAGACGGTTTGTCACTGAGGGATAAACCCTCATTGGTTCCTCTCTTG

Function

symbol description
pafah1b1 Enables dynein complex binding activity. Involved in several processes, including adult locomotory behavior; microtubule cytoskeleton organization; and nervous system development. Located in several cellular components, including kinetochore; microtubule cytoskeleton; and nuclear envelope. Part of microtubule associated complex. Implicated in lissencephaly and lissencephaly 1. Biomarker of hepatocellular carcinoma and schizophrenia.

NR:

description
PREDICTED: platelet-activating factor acetylhydrolase IB subunit alpha

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27851 True 1196 lncRNA 0.40 3 29653143 29656085

Neighbor

gene id symbol gene type direction distance location
aifm4 LOC104966742 coding downstream 126821 29519140 ~ 29526322 (-)
trnaw-cca NA coding downstream 140423 29512649 ~ 29512720 (-)
prpf8 prpf8 coding downstream 144764 29491164 ~ 29508379 (-)
LOC120545703 rilp,LOC104966718 coding downstream 162499 29477893 ~ 29490644 (-)
LOC120545693 scarf1 coding downstream 175589 29469093 ~ 29477554 (-)
sept4b LOC103353393,LOC102798639,LOC102292831,LOC102194568,LOC101473185 coding upstream 63931 29720016 ~ 29771339 (-)
limk1a limk1,LOC100693040,LOC102194872,LOC101472506,LOC102798153,LOC102292112 coding upstream 119440 29775525 ~ 29829377 (-)
elna NA coding upstream 174402 29830487 ~ 29889063 (-)
psph psph,LOC102797258 coding upstream 289148 29945233 ~ 29951475 (-)
LOC120575091 phkg1 coding upstream 299421 29955506 ~ 29963599 (-)
G20463 NA non-coding downstream 46989 29604839 ~ 29606154 (-)
G20458 NA non-coding downstream 54396 29593404 ~ 29598747 (-)
G20431 NA non-coding downstream 99575 29553314 ~ 29553568 (-)
G20425 tlcd2,LOC107103571,LOC104967200 non-coding downstream 100043 29532566 ~ 29553100 (-)
G20408 NA non-coding downstream 184256 29443337 ~ 29468887 (-)
G20482 NA non-coding upstream 5462 29661547 ~ 29662779 (-)
G20526 NA non-coding upstream 37121 29693206 ~ 29693461 (-)
G20541 NA non-coding upstream 252092 29908177 ~ 29908403 (-)
LOC120575052 NA non-coding upstream 268312 29924397 ~ 29928951 (-)
G20548 gbas,LOC104966759,LOC102797551,LOC100692767 non-coding upstream 280796 29936881 ~ 29943898 (-)
G20417 scarf1 other downstream 204488 29447170 ~ 29448655 (-)
cwf19l2 cwf19l2 other downstream 1805595 27824605 ~ 27847548 (-)
G19840 NA other downstream 2564079 27088606 ~ 27089064 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other downstream 3183247 26451380 ~ 26469896 (-)
LOC120570434 fam124b other downstream 3207208 26434281 ~ 26445935 (-)
im:7138535 NA other upstream 311344 29967429 ~ 29972350 (-)
rnf26 rnf26 other upstream 431650 30087735 ~ 30091711 (-)
cbl cbl other upstream 498808 30154893 ~ 30198071 (-)
arhgef12a arhgef12 other upstream 912788 30568873 ~ 30618434 (-)
spa17 spa17,LOC103353395,LOC106919647,LOC107380342,LOC100697535 other upstream 1030126 30686211 ~ 30696629 (-)

Expression


Co-expression Network