LOC120575052


Basic Information

Item Value
gene id LOC120575052
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 29924397 ~ 29928951 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU27944
TCGCTTCCGGCTGCCATTTTTAGGTGAACGTCTGAAGTTAGAGCTGAAATATCTGTTAATGTCCGGGTATTATATATAAAGTTTTATGCTGGACAGAAGACTGCGGAGTTTTGAAATGTCTTTAAAAGAGCGAAATGCGAAAACCCTGATGCCAACAGCAAGTACAGTGACCTTGAGAGGTGGGAATGAGTGGGAGATTAAGATGAATACCTATGAAAAGACAAGGCAACCCTTGGTGTTCGATACAGAAGCGTCAGTTATGCCACATCTCCACAATTTGGTGGGATGAAAGAGGACTACATGAACAGAAAACCTACTACTGAAAACGGAGACACTGAAATGTTCTGGGGTTTTTTCTGGACTTTCCATCATATTATGTCATTGTCAGCCTGTGTACAGTGAGCCTTTAGTTTATATAATGTGACAAAAGTTTTCATTAAAATAACAAGCAAGCCCTAAGTGTGTTATTGTTATGTTAAGAGTTTTATCACTGACATTTATGAATAGCTGTTGAGACAACTGTAATACAAAAGGGCTTAGTCAGAAAGTTTACTTTGACTATGCAAATCACAGTGGTTCAATAAAGTGGTtatcattttttatgttttgtatgatttttaaatttttatatttgttgcttgtgaagcactttgtgattctaTCTGT
>XR_005641945.1
CATCGCTTCCGGCTGCCATTTTTAGGTGAACGTCTGAAGTTAGAGCTGAAATATCTGTTAATGTCCGGGTATTATATATAAAGTTTTATGCTGGACAGAAGACTGCGGAGTTTTGAAATGTCTTTAAAAGAGCGAAATGCGAAAACCCTGATGCCAACAGCAAGTACAGTGACCTTGAGAGGTGGGAATGAGTGGGAGATTAAGATGAATACCTATGAAAAGACAAGGCAACCCTTGGTGTTCGATACAGAAGCGTCAGTTATGCCACATCTCCACAATTTGGTGGGATGAAAGAGGACTACATGAACAGAAAACCTACTACTGAAAACGGAGACACTGAAATGTTCTGGGGTTTTTTCTGGACTTTCCATCATATTATGTCATTGTCAGCCTGTGTACAGTGAGCCTTTAGTTTATATAATGTGACAAAAGTTTTCATTAAAATAACAAGCAAGCCCTAAGTGTGTTATTGTTATGTTAAGAGTTTTATCACTGACATTTATGAATAGCTGTTGAGACAACTGTAATACAAAAGGGCTTAGTCAGAAAGTTTACTTTGACTATGCAAATCACAGTGGTTCAATAAAGTGGTtatcattttttat

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27944 True 666 lncRNA 0.39 3 29924397 29928949
XR_005641945.1 False 605 lncRNA 0.38 3 29924460 29928951

Neighbor

gene id symbol gene type direction distance location
elna NA coding downstream 35334 29830487 ~ 29889063 (-)
limk1a limk1,LOC100693040,LOC102194872,LOC101472506,LOC102798153,LOC102292112 coding downstream 95020 29775525 ~ 29829377 (-)
sept4b LOC103353393,LOC102798639,LOC102292831,LOC102194568,LOC101473185 coding downstream 153058 29720016 ~ 29771339 (-)
aifm4 LOC104966742 coding downstream 398075 29519140 ~ 29526322 (-)
trnaw-cca NA coding downstream 411677 29512649 ~ 29512720 (-)
psph psph,LOC102797258 coding upstream 16282 29945233 ~ 29951475 (-)
LOC120575091 phkg1 coding upstream 26555 29955506 ~ 29963599 (-)
chchd2 chchd2 coding upstream 34906 29963857 ~ 29966571 (-)
grik4 grik4 coding upstream 289229 30218180 ~ 30552502 (-)
tlcd5a tmem136,LOC104967126,LOC102792095 coding upstream 692351 30621302 ~ 30625183 (-)
G20541 NA non-coding downstream 15994 29908177 ~ 29908403 (-)
G20526 NA non-coding downstream 230936 29693206 ~ 29693461 (-)
G20482 NA non-coding downstream 261618 29661547 ~ 29662779 (-)
G20480 pafah1b1,LOC106581047 non-coding downstream 268312 29653143 ~ 29656085 (-)
G20463 NA non-coding downstream 318243 29604839 ~ 29606154 (-)
G20548 gbas,LOC104966759,LOC102797551,LOC100692767 non-coding upstream 7930 29936881 ~ 29943898 (-)
G20604 NA non-coding upstream 137466 30066417 ~ 30069192 (-)
G20607 NA non-coding upstream 152171 30081122 ~ 30081399 (-)
LOC120572323 NA non-coding upstream 173058 30102009 ~ 30102884 (-)
G20637 NA non-coding upstream 210303 30139254 ~ 30141767 (-)
G20417 scarf1 other downstream 475742 29447170 ~ 29448655 (-)
cwf19l2 cwf19l2 other downstream 2076849 27824605 ~ 27847548 (-)
G19840 NA other downstream 2835333 27088606 ~ 27089064 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other downstream 3454501 26451380 ~ 26469896 (-)
LOC120570434 fam124b other downstream 3478462 26434281 ~ 26445935 (-)
im:7138535 NA other upstream 38478 29967429 ~ 29972350 (-)
rnf26 rnf26 other upstream 158784 30087735 ~ 30091711 (-)
cbl cbl other upstream 225942 30154893 ~ 30198071 (-)
arhgef12a arhgef12 other upstream 639922 30568873 ~ 30618434 (-)
spa17 spa17,LOC103353395,LOC106919647,LOC107380342,LOC100697535 other upstream 757260 30686211 ~ 30696629 (-)

Expression


Co-expression Network