G20548 (gbas,LOC104966759,LOC102797551,LOC100692767)


Basic Information

Item Value
gene id G20548
gene name gbas,LOC104966759,LOC102797551,LOC100692767
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 29936881 ~ 29943898 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU27947
gggtgcgtctagatttctaggctaatggCTATGAGTTTTCATCACAACTTTGTGTTTAGGAAAGGACTCACCTGTGTAGTACACCACCTCGTCCCAGCCCTCCTGCTGCCAGGCGCCATTTCTGGTGTCTTCTCTGGACTGAAGGTCTTTGTAAGCTGCAATCAACAGATCACACATAGCACTGCTGATAGTACGTGGAGACGCTGCACACAAAGTCGGTAGCAGTTTAGCTAAATGTTTGAGCTGCACGTAACAATTATTTCCTTTATCAATTAATCTGGTAACAATTTTTGGATTAatccttgtgttgacttcgggtcacattgacccgttttcaatttttgttttatgtcagaaaatatggcacgtagaaataagcgctgaaaatgtgtagacaACACAAATTATTCTGTTGAAGTTATAACAACTGATTTGTCTGGACACTTCAATACCAGGTgacacctaaaaaaaaataaaaaaaaataatgttcttACAATTAGTTTGGTGCGGTAAACGTTTTAGCAAACAATTGCATATTACAATGCAAACAGACAAGGAGGAGTCATGTTTGTGTCCACGTGATGAAAGTGCAATATTCAGTCTCCTGGCAGCAACGTTTGGGGCATTACTGCTTCATAAATGACTTAAAACAGTCAATTATCAAAACTGTTGATTGGTTTTCTGTGGAACAACTACTGATTTCAGCACTAGCATGATTCTGTACACGCTGACACTGTCAGTATGTCATTTTACATAAAGTTGGTATTTGACCGTACCCCAGAGGTGATGAACCATATAGAGGTTGCCGATCTGTGAGAAAAACCCTCCCACAGCTTCTCGGTTGTGCTGGCGGTATCCGATGGCTCTGGCCCAGTAATTACCCCACTCGATCATGGTTCCTGGctggaagaaagaaaacacaatgttcTTTATTACAATAAAACAGCTTTCCAAACTGCAGATTGATATCacaccttcttcttctttccagAGTAAAGACATTAACACAAATAAATGGTAGAGACGTAACACAGGTATTTTGTCATTGGGAAGATAAGCTGAAATAACAATTACACCCAAAGGCTTCTTTAATCATTCTCTGGGGCTTAAGACAACAAACGGCGTGCTGTTTCTAAGAGTCCGTGGTGAGGGATAATAGCTCGCATTCATCACGTCACAGGGGGCTCTGTCAGATCAGGACGAAAGACTTAATGTGCAGCGCATGATGCGTTTCCAGCATTATGTAGCTCTAATGCTGCTGTCAATTTAACCATTGAGATTAACTATGTCACCTGAGTGTCGATAAGTAGATATAAGTGGTTTATGTTGTTAATAGGGACTGTTTGAGCACCACTCTCATCTTGAATGCTCAAGACACAGGGGTCATTGTGGCGGAGGTAATTTAGAGGTCCGAGAAACAAAGCATGGCATGTCATCAGTTTAAACGGGAAAACATGACAGAGGACAAGTGAAAGAGCAATGCTGTCGCTTTCTCCTGAAGCCTAAGCCGCTGCAGAGGAGCTAGCAAAATAATACTTTATATGCACTGGGGTAGCTTCTAGTGGCGATGAGTTGTGATGATGCTAAAAGGGACCTGAGCTCGTAGATGTTGGGGCCCTCTCGGGGAACGGGCTCGTTCCAGAAGCTGAACTCCAGCAGAAGCTGGTTTCTGCGAGACATCAGCATCTTACCCCGCTCCTTCCTGTACGCTGTGAACTCCTGGTTCTGCTTGAGCTTGTTCATCACCTCTGTTAGAGCTGGGTATCCACCTCTGTAACGCCACAGATGAACTGGGAAGTAGGAAACAAATATATCATAGATGCAAAATTGCACAAAACACAGAAATGTTAActaaaagaagaagacatacttTTAATGATCCCTAAgaggaaatacatttttacactcTGTTGTTGTACACATTACGTACAGgcccaaaatacacacacacaaacaggacctatacatgcactaatggggagatgtcagagtgagggggctgccccACGAACAGGCGCcttgagcagttgggggtttggtgcttgctcaagggcacctcagcagTGCCCAGgtggtgaactggcacctctccagctaccagtccacagtCCGTACTTGGTCCATAGGGATTTGGTTCCCAAGCCATGTCCCtatggactgagctactgctgcCCCTAActgatataaataatataaaaaaacattcctCCAGCCCTAAAACGTATAACCTTTGACATAATTCTTCTCACTTTGTGAGAGGGTTGAATCAATACAGAGCAGGAGTTTCCTGAACTGTTCACATCTTTGTGAAAATGAcgtatttttcagttttttacaaGTTAATAAACTGCATCCTGATAACTGAAGATTATTAGCTGGTAAGACaacaaataattatttaaacaaagaaGTGTTTTAGTCATATTAGGTAATGacagaatatttttttatgaatatatGACTTAATGGTTTATTCTGTTTGTTTAAATACTATCGAGCCAATAATTCAGCAACAACTAAAGCAACACAATGTAGATGTGGAATGAGAAGTATAAGAAATCAT
>TU27948
gggtgcgtctagatttctaggctaatggCTATGAGTTTTCATCACAACTTTGTGTTTAGGAAAGGACTCACCTGTGTAGTACACCACCTCGTCCCAGCCCTCCTGCTGCCAGGCGCCATTTCTGGTGTCTTCTCTGGACTGAAGGTCTTTGTAAGCTGCAATCAACAGATCACACATAGCACTGCTGATAGTACGTGGAGACGCTGCACACAAAGTCGGTAGCAGTTTAGCTAAATGTTTGAGCTGCACGTAACAATTATTTCCTTTATCAATTAATCTGGTAACAATTTTTGGATTAatccttgtgttgacttcgggtcacattgacccgttttcaatttttgttttatgtcagaaaatatggcacgtagaaataagcgctgaaaatgtgtagacaACACAAATTATTCTGTTGAAGTTATAACAACTGATTTGTCTGGACACTTCAATACCAGGTgacacctaaaaaaaaataaaaaaaaataatgttcttACAATTAGTTTGGTGCGGTAAACGTTTTAGCAAACAATTGCATATTACAATGCAAACAGACAAGGAGGAGTCATGTTTGTGTCCACGTGATGAAAGTGCAATATTCAGTCTCCTGGCAGCAACGTTTGGGGCATTACTGCTTCATAAATGACTTAAAACAGTCAATTATCAAAACTGTTGATTGGTTTTCTGTGGAACAACTACTGATTTCAGCACTAGCATGATTCTGTACACGCTGACACTGTCAGTATGTCATTTTACATAAAGTTGGTATTTGACCGTACCCCAGAGGTGATGAACCATATAGAGGTTGCCGATCTGTGAGAAAAACCCTCCCACAGCTTCTCGGTTGTGCTGGCGGTATCCGATGGCTCTGGCCCAGTAATTACCCCACTCGATCATGGTTCCTGGCCTGAGCTGGTAGGACCTGAGCTCGTAGATGTTGGGGCCCTCTCGGGGAACGGGCTCGTTCCAGAAGCTGAACTCCAGCAGAAGCTGGTTTCTGCGAGACATCAGCATCTTACCCCGCTCCTTCCTGTACGCTGTGAACTCCTGGTTCTGCTTGAGCTTGTTCATCACCTCTGTTAGAGCTGGGTATCCACCTCTGTAACGCCACAGATGAACAGCCTGGTCTTGTTCGCCATACCAGGTATTCCAAGTGCCCACCAGCTCACACGGATAGTACTTATCAGCATGGATGGAGGGCAAAACATCCTCACAGAGTTTGTTGTACGCATCCAGGCACTCCGGCTTGACATTATGGAACTGAATTTTGTACAGGTTACTTTCCTCATTTTTGGTCAGGAGGTTGGCATGTGTATCTTTCCTGGGATCAACTTTCCTCACAAACAGTGACTTAAACCAGCTGTCCTGTCCGTTTCTGCTGCTTGATGTTGCAAATCCCCTGCTCCACACGACGAGCTGTCCGGCCGACTGGGCCCTGCTTTTAGCCCGACCCAGGGCACCGCTGACTCTGTGAAGGACTCCAGTCGCCATCTTCAACTGTTCTCATGCACACAGAGCAGTTACCACATCTGACCACCAGGTGGCGATGCAGCACCGCAGTGctggaccatagactgtatattaaggTGCTGGACATGGTGCTGGACCGACCAAAGACAGGAGCGTTGTAGACACTGATAGAGGAAGTAGGCCTATTCTGATAACAACAAGttggttctcttaatacatccatgggtatACGTATGTAAAACTATCTAAGTttaatcaggaaaatgtacttaaaatagcctattacaagtaaaattacATCATTCACTTATTACCTACTTACCCACTAATGTAAAAACAGGATTTTACTGTTATAATTGGTTGAGGAGGAGCAAATTGTTAT

Function

NR:

description
protein NipSnap homolog 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27947 True 2564 lncRNA 0.42 4 29939424 29943898
TU27948 False 1850 lncRNA 0.45 8 29936881 29943898

Neighbor

gene id symbol gene type direction distance location
elna NA coding downstream 47818 29830487 ~ 29889063 (-)
limk1a limk1,LOC100693040,LOC102194872,LOC101472506,LOC102798153,LOC102292112 coding downstream 107504 29775525 ~ 29829377 (-)
sept4b LOC103353393,LOC102798639,LOC102292831,LOC102194568,LOC101473185 coding downstream 165542 29720016 ~ 29771339 (-)
aifm4 LOC104966742 coding downstream 410559 29519140 ~ 29526322 (-)
trnaw-cca NA coding downstream 424161 29512649 ~ 29512720 (-)
psph psph,LOC102797258 coding upstream 1335 29945233 ~ 29951475 (-)
LOC120575091 phkg1 coding upstream 11608 29955506 ~ 29963599 (-)
chchd2 chchd2 coding upstream 19959 29963857 ~ 29966571 (-)
grik4 grik4 coding upstream 274282 30218180 ~ 30552502 (-)
tlcd5a tmem136,LOC104967126,LOC102792095 coding upstream 677404 30621302 ~ 30625183 (-)
LOC120575052 NA non-coding downstream 7930 29924397 ~ 29928951 (-)
G20541 NA non-coding downstream 28478 29908177 ~ 29908403 (-)
G20526 NA non-coding downstream 243420 29693206 ~ 29693461 (-)
G20482 NA non-coding downstream 274102 29661547 ~ 29662779 (-)
G20480 pafah1b1,LOC106581047 non-coding downstream 280796 29653143 ~ 29656085 (-)
G20604 NA non-coding upstream 122519 30066417 ~ 30069192 (-)
G20607 NA non-coding upstream 137224 30081122 ~ 30081399 (-)
LOC120572323 NA non-coding upstream 158111 30102009 ~ 30102884 (-)
G20637 NA non-coding upstream 195356 30139254 ~ 30141767 (-)
G20651 LOC103376870 non-coding upstream 271899 30215797 ~ 30216042 (-)
G20417 scarf1 other downstream 488226 29447170 ~ 29448655 (-)
cwf19l2 cwf19l2 other downstream 2089333 27824605 ~ 27847548 (-)
G19840 NA other downstream 2847817 27088606 ~ 27089064 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other downstream 3466985 26451380 ~ 26469896 (-)
LOC120570434 fam124b other downstream 3490946 26434281 ~ 26445935 (-)
im:7138535 NA other upstream 23531 29967429 ~ 29972350 (-)
rnf26 rnf26 other upstream 143837 30087735 ~ 30091711 (-)
cbl cbl other upstream 210995 30154893 ~ 30198071 (-)
arhgef12a arhgef12 other upstream 624975 30568873 ~ 30618434 (-)
spa17 spa17,LOC103353395,LOC106919647,LOC107380342,LOC100697535 other upstream 742313 30686211 ~ 30696629 (-)

Expression


Co-expression Network