LOC120572323


Basic Information

Item Value
gene id LOC120572323
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 30102009 ~ 30102884 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU28093
GGCGGAGCGCAACACACTTACTTTCAACTGCCAACTGCCTAACGTCACACAAGCGACACTGTTAAGTAAGTGGTAATTGCCAATGAACTGTGTTGATCAAACATATCTTTTTGAGGGTTGTTAGTAGTAAAAAATACTCTTCAGTTAAACCCTGGTGTTTGGCACAGCCACGACTGCCTGATCAGAAGACCTGAGGGACCACTGTGTGTTACAAACAATAACACTTTACACAGACAGGGATAAGTACACATGAAAACACCACCGTATCTGCCATCTGTGCCTGCCAGATGGATTGCCCTTGAGTGCAGGTCAGAGCCACATAAGGAGGATCAGGCAAAGATACCAAACCTCCTCCTGAGAAAGAGTCTGCAGTGGAGATGAGGTCTGCTTCTGAAAGCAGTGCACAAACAGCTGGACAGTGAACATCTTCAGAGGTGACAGTTTTCCAGAAGGATGCTGTGGTTGGTTTTGTTTGAGTCTTTTCCACATGCTTGTGGTTTTAAATATCTGGAAAAGATGGCTAATTTCCTCTATGTGCATTATTTAATTCTGGTTGAATGAGGACATTTGGTCAAGGCCATCTTCACATTTCAAGAATATTATCTTTTGGTTTATCACAACATTGGCATTTCTGTGTTCTCAGCCATTTCACTGCCCTATTTCAAGCTGTGTTTTTtagatatgtttttttatttatttttgttttgtg
>XR_005641420.1
AACACACTTACTTTCAACTGCCAACTGCCTAACGTCACACAAGCGACACTGTTAAGTAAGTGGTAATTGCCAATGAACTGTGTTGATCAAACATATCTTTTTGAGGGTTGTTAGTAGTAAAAAATACTCTTCAGTTAAACCCTGGTGTTTGGCACAGCCACGACTGCCTGATCAGAAGACCTGAGGGACCACTGTGTGTTACAAACAATAACACTTTACACAGACAGGGATAAGTACACATGAAAACACCACCGTATCTGCCATCTGTGCCTGCCAGATGGATTGCCCTTGAGTGCAGGTCAGAGCCACATAAGGAGGATCAGGCAAAGATACCAAACCTCCTCCTGAGAAAGAGTCTGCAGTGGAGATGAGGTCTGCTTCTGAAAGCAGTGCACAAACAGCTGGACAGTGAACATCTTCAGAGGTGACAGTTTTCCAGAAGGATGCTGTGGTTGGTTTTGTTTGAGTCTTTTCCACATGCTTGTGGTTTTAAATATCTGGAAAAGATGGCTAATTTCCTCTATGTGCATTATTTAATTCTGGTTGAATGAGGACATTTGGTCAAGGCCATCTTCACATTTCAAGAATATTATCTTTTGGTTTATCACAACATTGGCATTTCTGTGTTCTCAGCCATTTCACTGCCCTATTTCAAGCTGTGTTTTTtagatatgtttttttatttatttttgttttgtggcAACTAAATAAAGAGGCCGTGAGAGAGCTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28093 False 709 lncRNA 0.54 2 30102042 30102884
XR_005641420.1 True 732 lncRNA 0.41 2 30102009 30102874

Neighbor

gene id symbol gene type direction distance location
chchd2 chchd2 coding downstream 135438 29963857 ~ 29966571 (-)
LOC120575091 phkg1 coding downstream 138410 29955506 ~ 29963599 (-)
psph psph,LOC102797258 coding downstream 150534 29945233 ~ 29951475 (-)
elna NA coding downstream 212946 29830487 ~ 29889063 (-)
limk1a limk1,LOC100693040,LOC102194872,LOC101472506,LOC102798153,LOC102292112 coding downstream 272632 29775525 ~ 29829377 (-)
grik4 grik4 coding upstream 115296 30218180 ~ 30552502 (-)
tlcd5a tmem136,LOC104967126,LOC102792095 coding upstream 518418 30621302 ~ 30625183 (-)
oafa oaf coding upstream 522871 30625755 ~ 30642314 (-)
pde9al LOC104918028,LOC103353371,LOC100698601 coding upstream 554508 30657392 ~ 30669702 (-)
hepacama hepacam,LOC103353369,LOC102791330 coding upstream 570372 30673256 ~ 30682135 (-)
G20607 NA non-coding downstream 20610 30081122 ~ 30081399 (-)
G20604 NA non-coding downstream 32817 30066417 ~ 30069192 (-)
G20548 gbas,LOC104966759,LOC102797551,LOC100692767 non-coding downstream 158111 29936881 ~ 29943898 (-)
LOC120575052 NA non-coding downstream 173058 29924397 ~ 29928951 (-)
G20541 NA non-coding downstream 193606 29908177 ~ 29908403 (-)
G20637 NA non-coding upstream 36370 30139254 ~ 30141767 (-)
G20651 LOC103376870 non-coding upstream 112913 30215797 ~ 30216042 (-)
G20663 NA non-coding upstream 460755 30563639 ~ 30563878 (-)
G20677 NA non-coding upstream 486934 30589818 ~ 30590649 (-)
G20803 NA non-coding upstream 893511 30996395 ~ 31031162 (-)
rnf26 rnf26 other downstream 10298 30087735 ~ 30091711 (-)
im:7138535 NA other downstream 129659 29967429 ~ 29972350 (-)
G20417 scarf1 other downstream 653354 29447170 ~ 29448655 (-)
cwf19l2 cwf19l2 other downstream 2254461 27824605 ~ 27847548 (-)
G19840 NA other downstream 3012945 27088606 ~ 27089064 (-)
cbl cbl other upstream 52009 30154893 ~ 30198071 (-)
arhgef12a arhgef12 other upstream 465989 30568873 ~ 30618434 (-)
spa17 spa17,LOC103353395,LOC106919647,LOC107380342,LOC100697535 other upstream 583327 30686211 ~ 30696629 (-)
LOC120570619 LOC103368058 other upstream 839340 30942224 ~ 30956528 (-)
LOC120549585 LOC100707031 other upstream 1479587 31582471 ~ 31587838 (-)

Expression


Co-expression Network