G22245 (dynll2a,LOC107554284)


Basic Information

Item Value
gene id G22245
gene name dynll2a,LOC107554284
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 37264573 ~ 37269320 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU30252
ACAAAATGAAAGGCCACAGTGTAATAAGTCAacaattaatttttattttatcgaGTTTATACGATTTTGGTTCTGTAGCAACCTACTGGATAACTCTAATGAAGTGCAATTGTACTCAAGCCGGTTACAGTTGAGAGCAATGACAGGCACACGTTTTGTGCAAATTTAACAGCATTGTAACGGCTCCTACATATACACAGCAAAAATACATGCCAGAAAAACAATTCTAAATCAGTTAACATTGACAAAAGTTAGGAAGACTTCCCTCAATGTCAATCCAAGCTAACACTTGAAAGATACACATTTTACCCATTGTTGGATTATGCAAGAGAGCAACTTAAAACCTTGTCTTACAGCACAGAGAGAAATGTGTGGTGTTATCCAACCGCATGACTAAATCCCTCCAAACTGCCCTCTTAAAAGAATCTAAACATTAAGTTTTGCCCTTTCCAATTAATTATACTgacatgacaaaataaaaaacccCAAATCAGTGTGCTAGACAAGGGATACGCCTCCTTGCAGTTGCTTTAAGAAGAACTCCTAAATGCTTCGTCTTTCCTGCATGTCTGGCAGTACACTGACAATgccaaaataaaaagtattacGAGCCACACAAGACAACACGTGAATCAGAAACACAGGGGTCTTGGTAGCCTTGGTAGAGTTGACTGCAGATGTTTTTCTCTAAATCACCTTCCCGACGCTGCTTTACATCGGGTCAGTCCAATATCTACATACTCAAAagttaaataaactatttagcTTCAAGGTGAGCTTTTGTTTGGGTCTGATGACAGTTAAAGAAAGTGTGGTCATTATCCTCcaaacatgcagaaacacaggaTTATAGGACTGATATCTAGGTAGGTGAGTTGGAAGGTTTGAGTGACCAGTCTGTAGTGTTATTACTCGGACATTACAGGCTAAACAACTGTTTGGGAGCTTTATTTGCTCTACCGTGCCTCACAGTGAAACTTGACAAACTAAACATCCCTGGAAATGCATGCACTGGCTTGTGTTGGTTCCAAAATGTCAACTGTGTTGGATGACATCTTTTCTGAAATCCGTTGGATATTTTATatccaaataaacattaaaggtTTCGTATTTGCACGTACATATATAATTCCTTTTAAAATTAGTAAAATAGCAactgaactatgaactgaactcatGCGGTTTGTTCTCCTGGAAATCAAAGGAATGCCGTGAAGTAACTCATCATGTGAAACGACTATTTTGCCCCATTCATCGACTTCTTTCCGTGTTCCCGTGTTAAAATCTAGATAATTAAGTGTTAAACTGGTGCACGCAGTAGGATTTTACCATCTAAACCGACAGATGGAGTCTCATAACAGGTTCTGGCAATGCCACTTGTGAAGGAAAGCAGATGCACCATTACATTCTACAGCTTTCCTTTATTTTACAATCAAGGGCCACGTTGAAATCTTTTACAACCTAGAATTTAACAGTATCAACAAAAACTACTTCAGTTGCATTCAAATGGCAACTATCGAAAAGTAAACTTACTGTAACATACATTTAATAGTGTATAGTCCATGCATTTGCGCATGGCCTGGTTTGCATCATTATGGTATGTCATTATTAGTGTATGGGAGACATCAGCCACCAGTGCATTTCCAATTTAGGTTCAGGGAGAAAACCTCCTCAACACCCTTCAGGAAATTCTCAGCCAGACTTGAAGAGCAATATAGCCACTTGGCCCAAGTAGAAGTAAATGAAATGCTTTGTCTCGTGGGTGACGTAGCTGCCGAAGTTCCTCCCGACGATGCAGTGCCAGGTGGGGTTGTACTTCTTGTCAAACTCCTTCTTGATGTAGGCTGCGATGTCCTTCTCTATGTTGTACTTCTCCATGGCCTGGGTGGCACAGTCCACCGCGTCCTGCTGCATGTCCTCGGACATGTCTGCGTTCTTGATCACAGCTTTCCTGTCAGTCATGGTtaaggatgatgatgatgcctgcctgcctgaggaagaaaaagaaacgaGTTCACTGCACTGAAAATTAACACCGCACGTGGCGATGATGGGGATGGCTTTTAGGCCAGTAGGAGCATCGCAAAAGCATCAATCATACGCAGAAGATTGGCCGTTTGGTACCGCGTTTTCGATCATG

Function

symbol description
dynll2a Predicted to enable cytoskeletal motor activity. Predicted to act upstream of or within microtubule-based process. Located in P granule and nucleus. Is expressed in central nervous system; hindbrain; lateral line ganglion; polster; and rhombomere. Orthologous to human DYNLL2 (dynein light chain LC8-type 2).

NR:

description
PREDICTED: dynein light chain 2, cytoplasmic-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30252 True 2140 TUCP 0.41 2 37264573 37269320

Neighbor

gene id symbol gene type direction distance location
mrm3a NA coding downstream 58574 37201098 ~ 37205999 (-)
pitpnm3 pitpnm3,LOC102785427 coding downstream 166775 36985052 ~ 37097798 (-)
LOC120547112 NA coding downstream 342656 36909644 ~ 36921917 (-)
wdr81 wdr81 coding downstream 435105 36812622 ~ 36829468 (-)
serpinf2b NA coding downstream 452091 36809696 ~ 36812482 (-)
dusp14 dusp14 coding upstream 147002 37416322 ~ 37429632 (-)
traf4a traf4 coding upstream 234106 37503426 ~ 37545513 (-)
nek8 nek8 coding upstream 277414 37546734 ~ 37566623 (-)
zgc:174895 NA coding upstream 314921 37584241 ~ 37598942 (-)
LOC120552187 LOC104967580,LOC102298130,LOC100699189 coding upstream 360992 37630312 ~ 37639613 (-)
G22232 NA non-coding downstream 1143 37229646 ~ 37263430 (-)
G22217 NA non-coding downstream 52381 37210199 ~ 37212192 (-)
G22181 NA non-coding downstream 157927 37106269 ~ 37106646 (-)
G22176 NA non-coding downstream 163433 37100929 ~ 37101140 (-)
G22169 NA non-coding downstream 296009 36965958 ~ 36968564 (-)
LOC120545348 NA non-coding upstream 3866 37273186 ~ 37275868 (-)
G22291 NA non-coding upstream 103868 37373188 ~ 37376305 (-)
G22308 NA non-coding upstream 154522 37423842 ~ 37427304 (-)
G22320 NA non-coding upstream 296543 37565863 ~ 37566175 (-)
G22321 NA non-coding upstream 296914 37566234 ~ 37566455 (-)
kiaa0753 kiaa0753 other downstream 128732 37112196 ~ 37135841 (-)
dph1 dph1,LOC102789142 other downstream 714459 36460679 ~ 36550114 (-)
taok1a LOC103356490,LOC104958432 other downstream 934164 36309917 ~ 36330409 (-)
lrfn1 lrfn1 other downstream 1000534 35976742 ~ 36264039 (-)
zgc:77784 LOC103362442 other downstream 1928341 35265295 ~ 35336232 (-)
tada2a tada2a other upstream 169666 37438986 ~ 37450840 (-)
si:ch211-105f12.2 LOC103368707,LOC107379995,LOC102080198,LOC107090084 other upstream 382139 37651459 ~ 37655795 (-)
LOC120571840 LOC103356713,LOC100701072,LOC102300918,LOC101484608,LOC102193268 other upstream 423118 37692438 ~ 37698139 (-)
p4ha3 p4ha3 other upstream 463521 37732841 ~ 37746282 (-)
robo2 NA other upstream 1083704 38353024 ~ 38648599 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G230700 NA non-coding CI01000054 null 3001195 ~ 3003117 (+)
tiger barb (Puntius tetrazona) G130082 LOC103461248,LOC107835431,LOC106945151 non-coding NC_056717.1 CM032086.1 3149134 ~ 3149771 (+)
mexican tetra (Astyanax mexicanus) G5801 dynll2a,LOC107554284,LOC103397138 non-coding NC_035897.1 CM008300.1 23335116 ~ 23339774 (+)