G22629


Basic Information

Item Value
gene id G22629
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 39043089 ~ 39043577 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU30744
aattaacaagatgcaaaacacttttaccagtcccgaaacaaatttacaaatgacagattcttcacggaaagggaatgtaccacataccggaagtgatgaggtgttgttggtgagcgcagtcaatttgtgttgttgtgagtgagtatatggcgtgaatgaagtttatggtgactttacgtgtggtcggtgtttggagtttttatatgacgcggacctgacggaaacattggaaaaacagggaacgtatcgacagccgcggccggatcgaagctacagcaggggggcagctgagtccgtctgcagctgcaggacctggagctcactgcccattcc
>TU30745
tacgttttagaaaacaaatttacattttggaaaacaaaataacattttcgaaaacaaatttacgttttagaaaacaaatttacattttggaaaacaaaataacattttagaaaacaaatttacattttcgaaaacaaatttacattttagaaaacaaattaacaagatgcaaaacacttttaccagtcccgaaacaaatttacaaatgacagattcttcacggaaagggaatgtaccacataccggaagtgatgaggtgttgttggtgagcgcagtcaatttgtgttgttgtgagtgagtatatggcgtgaatgaagtttatggtgactttacgtgtggtcggtgtttggagtttttatatgacgcggacctgacggaaacattggaaaaacagggaacgtatcgacagccgcggccggatcgaagctacagcaggggggcagctgagtccgtctgcagctgcaggacctggagctcactgcccattcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30744 False 333 lncRNA 0.48 1 39043089 39043421
TU30745 True 489 lncRNA 0.40 1 39043089 39043577

Neighbor

gene id symbol gene type direction distance location
hmgb1b hmgb1,LOC105030464,LOC106521520,LOC103377997,LOC106612439 coding downstream 31763 39008439 ~ 39011326 (-)
LOC120546317 NA coding downstream 46077 38980345 ~ 38997012 (-)
LOC120549135 NA coding downstream 157865 38883498 ~ 38885224 (-)
LOC120551793 NA coding downstream 204001 38838199 ~ 38839088 (-)
LOC120554189 LOC103353607,LOC108235982,LOC106521500 coding downstream 260858 38781302 ~ 38782231 (-)
hdac12 LOC104966765,LOC106921057,LOC100691652 coding upstream 229677 39273254 ~ 39276078 (-)
mab21l1 mab21l1,LOC103378173 coding upstream 531838 39575415 ~ 39577736 (-)
dclk1b NA coding upstream 596101 39639678 ~ 39674302 (-)
spartb LOC101480805,LOC102300300,LOC102204879,LOC102787978 coding upstream 636703 39680280 ~ 39691179 (-)
LOC120546526 tuba1c,LOC101079871,LOC107557552,LOC106676044,LOC105935211,LOC101066234 coding upstream 650030 39693607 ~ 39696605 (-)
G22591 NA non-coding downstream 89720 38953014 ~ 38953369 (-)
G22579 NA non-coding downstream 136380 38906236 ~ 38906709 (-)
G22575 NA non-coding downstream 157447 38885227 ~ 38885642 (-)
G22563 NA non-coding downstream 228882 38813779 ~ 38814207 (-)
G22520 NA non-coding downstream 690503 38352382 ~ 38352586 (-)
G22632 NA non-coding upstream 7633 39051210 ~ 39051898 (-)
G22658 LOC100690850 non-coding upstream 153597 39197174 ~ 39198485 (-)
G22678 NA non-coding upstream 183167 39226744 ~ 39227403 (-)
G22679 NA non-coding upstream 183966 39227543 ~ 39231854 (-)
G22772 NA non-coding upstream 657929 39701506 ~ 39701882 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 307266 38727508 ~ 38735823 (-)
robo2 NA other downstream 394490 38353024 ~ 38648599 (-)
p4ha3 p4ha3 other downstream 1296807 37732841 ~ 37746282 (-)
LOC120571840 LOC103356713,LOC100701072,LOC102300918,LOC101484608,LOC102193268 other downstream 1344950 37692438 ~ 37698139 (-)
si:ch211-105f12.2 LOC103368707,LOC107379995,LOC102080198,LOC107090084 other downstream 1387294 37651459 ~ 37655795 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other upstream 899994 39943571 ~ 40033156 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other upstream 1246428 40290005 ~ 40470176 (-)
cntn5 NA other upstream 2986096 42029673 ~ 42167037 (-)
LOC120574039 nlk,nlk2 other upstream 4193105 43236682 ~ 43346673 (-)
LOC120553425 NA other upstream 4657394 43700971 ~ 43716741 (-)

Expression


Co-expression Network