G22918 (grik1,LOC102307112)


Basic Information

Item Value
gene id G22918
gene name grik1,LOC102307112
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 40241583 ~ 40244030 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU31117
aaaggttaaaggatgtaATGTTCTCACATAACTTTAGTCATTCTGAAACAATTCCAACATGACGAAACATATACATGCATGTTTATgaacttcataataaaaaagaaGTATAGACCGTAAGCAACTGATGGCCTGAGTGTCAAGCAacttaaataacattttgtagGAACACTCATTCATAAACAAATTGGAAATGACcgtcattaaataaatcaaagatttttttttgaaatacatGAGTACATACAAAAGTGGTAAGAATAAGTGCTGTTATGTAAAAGTTTCTGTGTGCTATAAATATGAAAATTGCAAACATTTAATAACAGAATACTCTCAAACCTACTGCAGTTGTTGAAATGAACATGGCAAACATGACTCAAAAGATAACACTTACAATCATCACAGCATTACTTACCCACATGGCATGACAATTCttttttcacacaaaacaaTGTTAGTTTTTTTGCAAAAGAAACAGCAAGGCCAAGAATGTCATGTGTCATGATGTCAGAAGTAAACAACCATCCATCATAAAAAGGGGTTCAAATGTATTCTTCCAATGAAGACTAAAACATCCATGTGCTCTACGTCAAAACTACTGAAAACACTAAAATCTGCATTAAAAAGTATTTCTGTTTTGATTGTAACAATGCAGTTCAACACATTCAGACTTCAAATTTTTGTTGGCCCAGTGATTACTGTAGTCCTCTGAAGACAACAATGACAACGCAAATGTGTAGTAGGGTTCATAACAGTCTTCGATAAAGTCCCCTAGTGTGTTAATACTTGTTGTGCCATTCGCACTGACCAACACTCACCTCCTCAATGTCCAAGTTCTTTCTGGATTTGTAAATAAACTCTCCAATTGCTACAAAAACTGATAGAACAAGTCCAGCTGCCAGCACAATAAAGATTCCCCCTATGTTCTCCACACCCAGAGCACTGGCCTCTTTGCTGTCCTCCTCTGGGCAGCCATTCCCTCTCCACCATTTCTCCTTCATCATGTGCAGCTTCCCTTCCTCCTGAAGCTGCAAGATGGCGATGGTGATCTTGTCTCTGTAAGGGGAGCCAATCGGGGTCCCCACTCCATAGCCCTTTGAATCTATCAAGCCTCCAATCTGTGTGAGGTTGCAGTTACGCTGGCTGATGTACTCGATGCTGGTCGATTCCATCAGGAGAGCGTAGTCTGTGGTGAGAACCCTCTGAATCCCCTCCCGGTTGTTTTTCACCAAAGCTGTGTTTTTCCTGCTGCTCATGAATGCCCACATTTTCTCGTAAGTTGAGATCTTAGATTTCTGTTGAATCAGAATCAGGATTTATGGACCTTTTAAAACAACGCATCTTGATGGTCAACACAGCAAACAACAAATCAGATACTGTTGATACATCGTCAGTGGTTGACAGTATTAGAAGACTATCTGCTGACTGGAGTAATCATCTTGATGCATGGCAGGAGACGGGATGTGACAAGAGTGTACAAATCTGCC

Function

symbol description
grik1 Enables kainate selective glutamate receptor activity. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within several processes, including chemical synaptic transmission; modulation of chemical synaptic transmission; and positive regulation of gamma-aminobutyric acid secretion. Predicted to be located in dendrite; postsynaptic density; and presynaptic membrane. Predicted to be part of kainate selective glutamate receptor complex. Predicted to be active in glutamatergic synapse and postsynaptic membrane. Predicted to be integral component of presynaptic membrane. Implicated in childhood absence epilepsy.

NR:

description
glutamate receptor ionotropic, kainate 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31117 True 1487 lncRNA 0.50 2 40241583 40244030

Neighbor

gene id symbol gene type direction distance location
LOC120546558 LOC103363424,LOC104943694 coding downstream 328823 39904112 ~ 39912760 (-)
LOC120546419 LOC104923287,LOC104947775,LOC103363426,LOC101479268 coding downstream 340136 39868408 ~ 39901447 (-)
LOC120546408 NA coding downstream 340332 39892209 ~ 39901251 (-)
LOC120546381 LOC103363428,LOC101062185,LOC102204297 coding downstream 463663 39759961 ~ 39777920 (-)
LOC120546392 NA coding downstream 485005 39735716 ~ 39756578 (-)
usp16 NA coding upstream 16330 40260360 ~ 40268274 (-)
stoml3a stoml3,LOC104925222,LOC101073007,LOC105935001 coding upstream 580723 40824753 ~ 40832594 (-)
slc25a15a slc25a15,LOC103152068,LOC106945435,LOC103475195 coding upstream 591638 40835668 ~ 40844838 (-)
cog6 cog6,LOC102796367 coding upstream 679995 40924025 ~ 40955064 (-)
trnak-uuu_7 NA coding upstream 787776 41031806 ~ 41031878 (-)
G22917 grik1,LOC104963619,LOC107585794,LOC102776120,LOC103378149 non-coding downstream 1235 40239332 ~ 40240348 (-)
LOC120544464 NA non-coding downstream 15264 40184747 ~ 40226319 (-)
G22826 NA non-coding downstream 317132 39924213 ~ 39924451 (-)
G22811 LOC104947776 non-coding downstream 374096 39864821 ~ 39867487 (-)
G22818 NA non-coding downstream 383797 39857436 ~ 39857786 (-)
G22919 NA non-coding upstream 3191 40247221 ~ 40248092 (-)
G22936 NA non-coding upstream 43608 40287638 ~ 40287869 (-)
G22962 NA non-coding upstream 147318 40391348 ~ 40489408 (-)
LOC120545373 NA non-coding upstream 281539 40525569 ~ 40561333 (-)
LOC120545377 NA non-coding upstream 282966 40526996 ~ 40531357 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other downstream 208427 39943571 ~ 40033156 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 1505760 38727508 ~ 38735823 (-)
robo2 NA other downstream 1592984 38353024 ~ 38648599 (-)
p4ha3 p4ha3 other downstream 2495301 37732841 ~ 37746282 (-)
LOC120571840 LOC103356713,LOC100701072,LOC102300918,LOC101484608,LOC102193268 other downstream 2543444 37692438 ~ 37698139 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other upstream 45975 40290005 ~ 40470176 (-)
cntn5 NA other upstream 1785643 42029673 ~ 42167037 (-)
LOC120574039 nlk,nlk2 other upstream 2992652 43236682 ~ 43346673 (-)
LOC120553425 NA other upstream 3456941 43700971 ~ 43716741 (-)
smco4 NA other upstream 3526036 43770066 ~ 43789435 (-)

Expression


Co-expression Network