LOC120545373


Basic Information

Item Value
gene id LOC120545373
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 40525569 ~ 40561333 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU31175
GATTTAGCTAATTTATTGTGTTTGGCGGCAGAATCTCTGACTTCCCCTGAACGCCTCACTGAAATCTAACTGCGCAGCTCTGCTCAGCAGCTCATTGTGTTCTAGAACCTTCTGAGAACATCGATACTGCTGTGCGCTTTTGATTGTGTTGGTTACTCTGTGGCAAGTCGACAGTGTGCAGCTGCCCTCCagctcctctccatctccctctccatctccctctacTTCTATCACATCTGTCTTTACTGGCCCTTCTATCCACTCTATCTATTATTGGTTCTTTTCACCTCTCTCCTATAACATCTACCACTCATCCCTTAATATAAGGTTTTCTATCTCTCCTGTCAAATCTAATAAATCTATCTAAATTTGAGGTTTTCTATCATTCTATCCCTCTAATTCTATCCCGCTCTATCTACATTTGGTTCTGCACTTGTTGCAAGTTACCCGCTGGTTCTGGTTCAAATATTATCATACCCATTTGTTCTGGTTCAAGGATTATTATATCCTACCCATTTGTTCTGGTTGGAAAGCTACAGATTACTGGTATCTGTTTTGGATTCATGGGTTGATTGGAACCTGATCATTCTGTTTTATGGATCTGTGAGTTTCTCTGCTCACACTTTTTCtacctctcctgtctctctctcacacacatttgaTTTGGCCTTTTCAATTGGCAAAAACCTTATTGTATTTTTGAATTGTCCATATTGTATCAATATTCTATTTGGTAGCAgtcataattaaataaattaagtgttttttgttcattaaattaattgaaaagactggaaacacataaataacacacattttgtttagcttttatcacaaacatttgaCTGTAAAAACTAATTCAAAATTAGATCTGGTAAATTTCCAAATATATAAGTTGCTGTTATAAAGTGTATCATTGAAGACAACAGTCTCTTGTTAATGTACATAACAATAAATTGAAGTCCAAATCTATATTTATACAAGAAAAGAGCTGTAGTTGTTCCAGGACCGTGTTGCTGTGGAGCTCTGTACCAAAAGGTTTGTTTTGACTGCAAATATATTCACACCAGAGTACACATAATCAGTTTTTGTTTGTGCAAGTGTAAAAGTAATTACACTACATACATTGAGTTATTTGTCTCTGATTCACATATTTGTACCTCATCTATAGATCCACTCACATTGTTTACATCAACAATTTTGTACGTGCTTTATTGTTGGTTAAATctttatgaaataaataaacagactgTAAGGAGAAACTG
>TU31176
GATTTAGCTAATTTATTGTGTTTGGCGGCAGAATCTCTGACTTCCCCTGAACGCCTCACTGAAATCTAACTGCGCAGCTCTGCTCAGCAGCTCATTGTGTTCTAGAACCTTCTGAGAACATCGATACTGCTGTGCGCTTTTGATTGTGTTGGTTACTCTGTGGCAAGTCGACAGTGTGCAGCTGCCCTCCagctcctctccatctccctctccatctccctctacTTCTATCACATCTGTCTTTACTGGCCCTTCTATCCACTCTATCTATTATTGGTTCTTTTCACCTCTCTCCTATAACATCTACCACTCATCCCTTAATATAAGGTTTTCTATCTCTCCTGTCAAATCTAATAAATCTATCTAAATTTGAGGTTTTCTATCATTCTATCCCTCTAATTCTATCCCGCTCTATCTACATTTGGTTCTGCACTTGTTGCAAGTTACCCGCTGGTTCTGGTTCAAATATTATCATACCCATTTGTTCTGGTTCAAGGATTATTATATCCTACCCATTTGTTCTGGTTGGAAAGCTACAGATTACTGGTATCTGTTTTGGATTCATGGGTTGATTGGAACCTGATCATTCTGTTTTATGGATCTGTGAGTTTCTCTGCTCACACTTTTTCtacctctcctgtctctctctcacacacatttgaTTTGGCCTTTTCAATTGGCAAAAACCTTATTATTGTATTTTTGAATTGTCCATATTGTATCAATATTCTATTTGGTAACAgtcataattaaataaattattaagtattttttagtttgttcattaaattaattgaaaagactggaaacacataaataacacacattttgtttaacttttatcACAACATTTGacttaaaactatttttttttttgtatcattgAAGAAAACAGTCTCTTGTTAATGTACATAACAATAAATTGAAGTCCAAATCTGTATTTATACAAGAAAAGAGCTGTAGTTGTTCCTGGACCGTGTTGCTGTGGAGCTCTGTACCAAAAGGTTTGTTTTGACTGCAAATATATTCACACCAGAGTACACATAATCAGTTTTTGTTTGTACAAGTGTAAAAGTAATTACAATACATATATTGAGTTATTTGTCTCTGATTCACATATTTGTACCTCATCTATAGATCCACTTACATTGTTTACATCAACAAGTTTTGTACGTGCTTTATTGTTGGTTAAATctttatgaaataaataaacagactgTAAGGAGAAACTG
>XR_005636687.1
CAGCTCTGCTCAGCAGCTCATTGTGTTCTAGAACCTTCTGAGAACATCGATACTGCTGTGCGCTTTTGATTGTGTTGGTTACTCTGTGGCAAGTCGACAGTGTGCAGCTGCCCTCCagctcctctccatctccctctccatctccctctacTTCTATCACATCTGTCTTTACTGGCCCTTCTATCCACTCTATCTATTATTGGTTCTTTTCACCTCTCTCCTATAACATCTACCACTCATCCCTTAATATAAGGTTTTCTATCTCTCCTGTCAAATCTAATAAATCTATCTAAATTTGAGGTTTTCTATCATTCTATCCCTCTAATTCTATCCCGCTCTATCTACATTTGGTTCTGCACTTGTTGCAAGTTACCCGCTGGTTCTGGTTCAAATATTATCATACCCATTTGTTCTGGTTCAAGGATTATTATATCCTACCCATTTGTTCTGGTTGGAAAGCTACAGATTACTGGTATCTGTTTTGGATTCATGGGTTGATTGGAACCTGATCATTCTGTTTTATGGATCTGTGAGTTTCTCTGCTCACACTTTTTCtacctctcctgtctctctctcacacacatttgaTTTGGCCTTTTCAATTGGCAAAAACCTTATTGTATTTTTGAATTGTCCATATTGTATCAATATTCTATTTGGTAGCAgtcataattaaataaattaagtgttttttgttcattaaattaattgaaaagactggaaacacataaataacacacattttgtttagcttttatcacaaacatttgaCTGTAAAAACTAATTCAAAATTAGATCTGGTAAATTTCCAAATATATAAGTTGCTGTTATAAAGTGTATCATTGAAGACAACAGTCTCTTGTTAATGTACATAACAATAAATTGAAGTCCAAATCTATATTTATACAAGAAAAGAGCTGTAGTTGTTCCAGGACCGTGTTGCTGTGGAGCTCTGTACCAAAAGGTTTGTTTTGACTGCAAATATATTCACACCAGAGTACACATAATCAGTTTTTGTTTGTGCAAGTGTAAAAGTAATTACACTACATACATTGAGTTATTTGTCTCTGATTCACATATTTGTACCTCATCTATAGATCCACTCACATTGTTTACATCAACAAGTTTTGTACGTGCTTTATTGTTGGTTAAATctttatgaaataaataaacagactgTAAGGAGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31175 True 1265 lncRNA 0.52 5 40525569 40561333
TU31176 False 1232 lncRNA 0.35 5 40525569 40561333
XR_005636687.1 False 1189 lncRNA 0.35 4 40557656 40561259

Neighbor

gene id symbol gene type direction distance location
usp16 NA coding downstream 257295 40260360 ~ 40268274 (-)
LOC120544420 bach1 coding downstream 265316 40227369 ~ 40260253 (-)
LOC120546558 LOC103363424,LOC104943694 coding downstream 612809 39904112 ~ 39912760 (-)
LOC120546419 LOC104923287,LOC104947775,LOC103363426,LOC101479268 coding downstream 624122 39868408 ~ 39901447 (-)
stoml3a stoml3,LOC104925222,LOC101073007,LOC105935001 coding upstream 263420 40824753 ~ 40832594 (-)
slc25a15a slc25a15,LOC103152068,LOC106945435,LOC103475195 coding upstream 274335 40835668 ~ 40844838 (-)
cog6 cog6,LOC102796367 coding upstream 362692 40924025 ~ 40955064 (-)
trnak-uuu_7 NA coding upstream 470473 41031806 ~ 41031878 (-)
lpar6a lpar6,LOC104952799,LOC101069375,LOC103363548 coding upstream 555345 41116678 ~ 41119295 (-)
G22962 NA non-coding downstream 36161 40391348 ~ 40489408 (-)
G22936 NA non-coding downstream 237700 40287638 ~ 40287869 (-)
G22919 NA non-coding downstream 277477 40247221 ~ 40248092 (-)
G22918 grik1,LOC102307112 non-coding downstream 281539 40241583 ~ 40244030 (-)
G22917 grik1,LOC104963619,LOC107585794,LOC102776120,LOC103378149 non-coding downstream 285221 40239332 ~ 40240348 (-)
G23008 LOC103360897 non-coding upstream 195966 40757299 ~ 40758353 (-)
G23010 NA non-coding upstream 200247 40761580 ~ 40761780 (-)
G23011 NA non-coding upstream 200691 40762024 ~ 40764005 (-)
G23012 zgc:63694,LOC108410642,LOC107752277,LOC107699226,LOC107555275 non-coding upstream 204518 40765851 ~ 40766068 (-)
G23013 NA non-coding upstream 207585 40768918 ~ 40769125 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other downstream 55393 40290005 ~ 40470176 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other downstream 492413 39943571 ~ 40033156 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 1789746 38727508 ~ 38735823 (-)
robo2 NA other downstream 1876970 38353024 ~ 38648599 (-)
p4ha3 p4ha3 other downstream 2779287 37732841 ~ 37746282 (-)
cntn5 NA other upstream 1468340 42029673 ~ 42167037 (-)
LOC120574039 nlk,nlk2 other upstream 2675349 43236682 ~ 43346673 (-)
LOC120553425 NA other upstream 3139638 43700971 ~ 43716741 (-)
smco4 NA other upstream 3208733 43770066 ~ 43789435 (-)
mrps23 mrps23 other upstream 4255295 44816628 ~ 44824993 (-)

Expression


Co-expression Network