LOC120545377


Basic Information

Item Value
gene id LOC120545377
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 40526996 ~ 40531357 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU31180
ATAGTAAGTTATAATACTGTTAATATATATCTCTAACATAAAAATGGCTAACTTTTTAGAGCAAGCATAAGTGCACAAGATTAGCTAAGTTAGGTTAGCAGTCCTCTTAAATCTGCTTTTTGTCAATGAACCTACACTTTAAACTGTTTAGGTTGTAACTGACATTGTGGAATTGTGTgtattcataaataaataaaaaattaaatagctGCTCTGCCTCACAGCCAGACCTTCTGTTATAGCAGCATTTACCATTTactgagttttttttgtctctgtttgtaCACTGTAACTTTGAACCCACTAACTCAGTTTGTCACTGGTTTTCTCAACAGAACATCGATACTGCTGTGCGCTTTTGATTGGTAAGTATAGTAATACTATAATTGAAATTGATAATAGATCACATAACTTGACTGTAGATAATTATTTAGCATCTGTACACGTTTAAGTTTTGTTTAGAAAAAAGCCATTTATATATGATTTACACCAGGTGATGATTAATTCTGTGTACTGTGGCTAATTAAAAGCAGACTGCACAGAACTATGGCATATTGATTAAGTCCTAAGAGTTAagctacccaacagtatatagaGGAGTTAAGATTAGCACAATTATCAGTAAAATGCAACAGTCACATAAAGGCAGCAGCAGTAATCCAGAAACATAGAAtaggaaacacacagacacacacacccacccacaaacacacacacacagacacacacacccacccacaaacacacacacccacacccacaaacacacacacacacacacgcatacagatgcacacacacatacagatgcgcacacacacaaacacaaagaaagacccacacaaacatacacacacactgacagacacagagagacacacacatccccacaacacgcacaaacacgcatgcacacacacacaattttttttaaatatgaattagggctgggcgatatggaccaaaagtcatatcccgatatattttggctgaatatcgatatatgatatatatcccgatatttttttccgcaaagtgagagcaaatgttcagtcaaag
>XR_005636688.1
CTGAAATCTAACTGCGCAGCTCTGCTCAGCAGCTCATTGTGCTCTAGAACCTTCTGAGAACATCGATACTGCTGTGCGCTTTTGATTGTGTTGGTTACCCCGTGACAAGTCGACAGTATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31180 True 1059 lncRNA 0.40 2 40528779 40530634
XR_005636688.1 False 120 lncRNA 0.48 3 40526996 40531357

Neighbor

gene id symbol gene type direction distance location
usp16 NA coding downstream 258722 40260360 ~ 40268274 (-)
LOC120544420 bach1 coding downstream 266743 40227369 ~ 40260253 (-)
LOC120546558 LOC103363424,LOC104943694 coding downstream 614236 39904112 ~ 39912760 (-)
LOC120546419 LOC104923287,LOC104947775,LOC103363426,LOC101479268 coding downstream 625549 39868408 ~ 39901447 (-)
stoml3a stoml3,LOC104925222,LOC101073007,LOC105935001 coding upstream 293396 40824753 ~ 40832594 (-)
slc25a15a slc25a15,LOC103152068,LOC106945435,LOC103475195 coding upstream 304311 40835668 ~ 40844838 (-)
cog6 cog6,LOC102796367 coding upstream 392668 40924025 ~ 40955064 (-)
trnak-uuu_7 NA coding upstream 500449 41031806 ~ 41031878 (-)
lpar6a lpar6,LOC104952799,LOC101069375,LOC103363548 coding upstream 585321 41116678 ~ 41119295 (-)
G22962 NA non-coding downstream 37588 40391348 ~ 40489408 (-)
G22936 NA non-coding downstream 239127 40287638 ~ 40287869 (-)
G22919 NA non-coding downstream 278904 40247221 ~ 40248092 (-)
G22918 grik1,LOC102307112 non-coding downstream 282966 40241583 ~ 40244030 (-)
G22917 grik1,LOC104963619,LOC107585794,LOC102776120,LOC103378149 non-coding downstream 286648 40239332 ~ 40240348 (-)
G22972 NA non-coding upstream 61 40531418 ~ 40536651 (-)
G23008 LOC103360897 non-coding upstream 225942 40757299 ~ 40758353 (-)
G23010 NA non-coding upstream 230223 40761580 ~ 40761780 (-)
G23011 NA non-coding upstream 230667 40762024 ~ 40764005 (-)
G23012 zgc:63694,LOC108410642,LOC107752277,LOC107699226,LOC107555275 non-coding upstream 234494 40765851 ~ 40766068 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other downstream 56820 40290005 ~ 40470176 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other downstream 493840 39943571 ~ 40033156 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 1791173 38727508 ~ 38735823 (-)
robo2 NA other downstream 1878397 38353024 ~ 38648599 (-)
p4ha3 p4ha3 other downstream 2780714 37732841 ~ 37746282 (-)
cntn5 NA other upstream 1498316 42029673 ~ 42167037 (-)
LOC120574039 nlk,nlk2 other upstream 2705325 43236682 ~ 43346673 (-)
LOC120553425 NA other upstream 3169614 43700971 ~ 43716741 (-)
smco4 NA other upstream 3238709 43770066 ~ 43789435 (-)
mrps23 mrps23 other upstream 4285271 44816628 ~ 44824993 (-)

Expression


Co-expression Network