XLOC_004777


Basic Information

Item Value
gene id XLOC_004777
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 28377030 ~ 28381255 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010945
ttatttttgACACTTCAAGGGCACGTTTATTTTCAAGAGAAAATATCAGATACAGCGTTTACTTGATTAACAAAACCGACTATCATAAATCAGTAATACGGATTCTACTCAATACATTGATTTGAAGGTCTAGTTGTTTGGTTTCTAATTTCTGACAATGCATGTTAATTATCGCATTAATATATACGTAAACAAGAAAACACACAGTATAAGCCGGATTCCCTTTTCGGTTTGGTCCacatttttaacaatttcaacatcactttaatacatatatattaattaaataagagAAGTATAAAAGTAGGCACATGGTTTGATCGGATCAGACTAAATCTTCAATATCAACCAAGCTATAATTACAACAATAGAAATTACGGATGTTTATCTGGGAGCTGAAAGTATTCGGCACTTAAATCCAATCACCACaggaaagaaataaataattatatatcatATAACAACCCTAACAATATATGCCAGAATGAAACTAGCTTCTCAATCTATTTTATGCAATTGAACAATCACATAACTCCTATTATCAGCGcacacatttttaatatattccaCCTAAAGGCCAGTTCGATTGAAGATAATAGATGTTTAGTGTTCGGATTTTACTTTTCACAACTACGAGAGAATAAAATAGGGCAGAGCGTCTGATTTTATCCATCTAGACTACTTTGTTCTTGCTTTTACTGACATACTTTACCAAATCCAGGCTAATAGAAAGCAGGGACTGAAGAAGTGGACGAGAGAGAAAGACTTGAATATTGTTTTCTATGAAAAAACACATCTTAAATGAAATGATTTGAACAACATTGACTGAGCTTCATTTCAGATCACTTCTTAGAGCTCAAAGTCTGTCAGCGACAGATCAGCATCCGTGGCTTAAAGCTTGATATCGAGTCCacacgcacatatacacacattggAGAAAGCTTATTTTTGGCCACAAGCAATGATCCTAATTAACTGATAAACAATATCTTTCGAAATGCAAAccacaaacaaaagaaaacaattacaggaaaacagatttatgcaaacatCTGCTTTGGAAGGAAGATCAACAGTCAGTTTTCGGcttggcacttttttttttttcatcagttgCGAAAGCTTCAAACTGGGTCAGACATCTTGGGAGTTTCCACTCAGAACTCTGTTGATTTTGTTCTATGAATCAATACtgttctctgtctctctcttatttgaacacatttactCAGACAGATGTGCAAAGCTGGTAATATTAACACCCGCTGTTTGCTGTGTTAATAGAACTATAGCTGACAGAAATAAATTAGACCCTACCCTAACTAAATAGGTTTTATTTTTCAaacttttctttgttttgttttttggtggtAGATTTTTGGCTCAAGTAAAAATAGCGACTACTTTGGATTCACTCTTTGTAAACATTGTTTGGGTACATTTACATAGCATAGCTTCAactaaaaatagaaaacttattgTGTTTTGGCTGTTCCTTTATATGATAACAGCATTTCAGGCTTGtttatccaaaatcaaacaaaaaaaaaatgctcaggGGACAGCTTATGTAATGTGTCTTTGCTCTTAGGGTAagagattcatcagaataaacagaaaaaaaatagtccAAGGCACACAAAAaatctggaaaaaatattaaaaacgctACCCTGGTGAAGGCAGTTGTTTGCCAAAAGGAATAGTTGCAGGTTTACCGTTTTAAGCAATAGCCAagtcaataaaggcttttacatttttttttccacatttctcgagtgccttggactgatttttgctgtttaaaacTGTTATCCACTTTGATTGCACTGTTAATTTGTGAAACAACAATGGCAGACGACCAGACATTGATGTGTTTATATGTTGAAGACTGTACATGCGCACTGATGTGTAGGGTTTCTAGCGATCCTGTTTTGCATGTTACAATATTATTTTGTCCTTTTTGCTGTTTCAAGTGAATAAACGCCcctttattaacattttcattgatttatggctgttttccatttatttacgctTCTGAATTGTATTAAGggaccttaaagggatagttcaccaaaaactgaaaattctgtcatcatttactcaatcaTCACTTGTCACACTTGAGCAgctgaaatgttttgaaaacatgTAATTATTGACCTCCACAGTATTTGTATTTACATGGAAGAATTAACTATGGATCTATGGAAGCCAGTTGCTTcatgttttaactttttttgtaaaatatcttcttttgtgtgtgacagaaaaagaaaactcataaagCTATAGAACCAGGTTGAGTGCATCTAAAtgtgtgggtgaactatccctttaaaatcataaataaatgaaacacaatGTGAATCTCGAAATACAGAGTTTTGAATGGGTATCATTTTGCTAACATTAACATCTATAGATGGAACAGTTCCATTTTTAGTTTATCGTCATATAAATGTTCACTTAATGGCTTTAACATTACAGaagtggtttgtttttgttttatttataattctttcatatatatatatatatatattgaaggaCAAAAGGGCATAAAAAATCTACTCCAAGGTCACGGGATATGTGAATAAATGAGTTTTCATCCTACCTATGCTGTATATATTGCGTATACAGTACATGATACAAACTATATCCAACTATATGACAGTTTCTGTATACAATATATGCTATAAATGACCAGCTATATGCAGAAAAAGAGAAGTTTAAATTACGAGAGAGTTTAATGCTCCTCTCTGAGCAGTGAATGAGTTTACGGATATGATCAACAcatccaaaaagaaaaaaaaacatccgaGCAGCAACCTCAGGACTGCTTCTGTTCTGATCTGTGCAATACATCAGGAATTAAGCAGAGCTATTTTTCATCCCACATGAAGCGGTGATCAAAAACCAATATATTCCCTTTGAATCTCAAGTTGGATACTTTAAAAACTCTGCATATCCTGTTAATCATAAACATTACATTCATGATCACCCTTCATTTGGTTGTGATGTTTAATAAATAGAATCGAGTCAGGTAAATCTATCCTAATACCACCTTGTCACGTTGTAAATAATCAAAGCTAAAGTTTGGAATTCAGGGACAAACTTCTCTAAATTAAACGTTCCTCCTTGCCCTGTAATCAGGCAAATTTGGTATGGCTTCATTTTGACTACCCAGCTGTAAATGTCCTGGAAAATGGGATCCTGGTCCTCTAGTTGCCTGGCACCGAGAGAATGTATCCCGATCGGCTTTTGGTGAAGTctggctgtgattggctgatcttgGTTTCCACGACCACAGTGCACTTCCTTCCATTCATACTGCAGTGAATGGGGCTCACAGTGTTCACCTGTAGCTTCCTCTTCTCactagatagagagagagagagagagagagaaaatcatTGACATATTCcatatgttgttgttttggtttgCAGCGCTCTGTCTGTGTGCTTGTCTCATCTGGTTGAATGTTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010945 True 3495 lncRNA 0.35 2 28377030 28381255

Neighbor

gene id symbol gene type direction distance location
XLOC_004776 cdk5r1b coding upstream 6546 28367557 ~ 28370484 (+)
XLOC_004775 LO017791.1 coding upstream 77101 28298859 ~ 28299929 (+)
XLOC_004774 CABZ01027646.1 coding upstream 195310 28117365 ~ 28181720 (+)
XLOC_004773 cacna1g coding upstream 303468 27704015 ~ 28073562 (+)
XLOC_004772 spata20 coding upstream 711439 27589607 ~ 27665591 (+)
XLOC_004778 tbkbp1 coding downstream 193608 28574863 ~ 28678323 (+)
XLOC_004779 NA coding downstream 236446 28617701 ~ 28617965 (+)
XLOC_004780 tbx21 coding downstream 367934 28749189 ~ 28770817 (+)
XLOC_004781 pnpo coding downstream 418733 28799988 ~ 28807184 (+)
XLOC_004782 cdk5rap3 coding downstream 444480 28825735 ~ 28837752 (+)
XLOC_004762 dre-mir-10a non-coding upstream 1242063 27134869 ~ 27134967 (+)
XLOC_004754 BX469896.1 non-coding upstream 1480414 26894321 ~ 26896616 (+)
XLOC_004752 NA non-coding upstream 1542838 26737431 ~ 26834192 (+)
XLOC_004751 NA non-coding upstream 1684979 26691819 ~ 26692051 (+)
XLOC_004748 NA non-coding upstream 1783732 26589644 ~ 26593298 (+)
XLOC_004786 NA non-coding downstream 552269 28933524 ~ 28946150 (+)
XLOC_004791 AL732488.1 non-coding downstream 632318 29013573 ~ 29013690 (+)
XLOC_004796 NA non-coding downstream 931310 29312565 ~ 29373414 (+)
XLOC_004797 BX072570.2 non-coding downstream 1050820 29432075 ~ 29432191 (+)

Expression


Co-expression Network