smco4


Basic Information

Item Value
gene id smco4
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 43770066 ~ 43789435 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU32075
GCCACGTCGAGCTCTGTGAGGAACAGCAGGTTTTTAACTTACTGTACTTTATCCTGTAACAAACCTGACGTCTGGGAGAAACACTGGAAGAGCGAGCCAAATCAAATTTCTCAGCGTGGAACTGTTGACAACTTGGACTCTGCCCGTTCCTGTGAGCACAGCAAAGACAGAGTCAGCAGTCGTGGAGATATCATGAGGCAGCTCAAAGGCAAACCCAAAAAAGAAACGTCCAAGGACAAGAAGGAACGTAAGCAGGCCATGCAGGAAGCCCGACAGCAGGTGGCCACTATTGTACTGCCTACACTAGCTGTAGTGGTGCTGCTCATCGTTGTCTTTGTCTATGTGGCCACCAGGCCTGGTGCTATAGAGTAGACATTCAAGTTCTGCTAAGAAGACATGAACTCCTAAACGGGCTTTGAAAACTGACAATGGCTATACCCAAAGGATTACCCCCATCATGTGACAACCTGTCTGAAAGCCATCCCCAAAGTGTGTTTCTTTGCTCTAAGAAGGATTGAAGCTGCCGAAAGAAGAAATCAAACTGAGCAGAGAAACAATTGCTCCTTAGTGCCTTCAGATAACATCATCTTCAACATCCATTTAATCCTGTTCATTTTAGAGCAGCGCATGCATTCATGTTGTCTTACAAAATTATGCAATATCATGCATAGCAAAGGACTCATGCACAGCTTGCCAAGTTTGACCAGAggtgttaaaaaaatgtctaaacTTTTGACTCGGTGctatttttaatatttcaagTCAATGCAACATGAGCCTGGTCTCTGACATGTACCACTCTTTGGACAGCACCCACGCCTATCTGTATGAATAGTATGTAGGAAAAGAAGGATTCAGTCTGCTCCTGCATTGTTGAACATCTAAATGCAGCTCTAGAGTATCTTATTGAATGTAATTGTCAAATATGTTCTCTTAAGTCCAGTatgttcaaacacacacaaatttctTCATCTTTAATGTGAATGTTACCCAATTTGTTTATATTAAGTTATTGACAACCATACCTTTGAGTTACTCATGACATCTGTGTGGATGTAAAAAGGTGCCT
>TU32080
GCCACGTCGAGCTCTGTGAGGAACAGCAGGTTTTTAACTTACTGTACTTTATCCTGTAACAAACCTGACGTCTGGGAGAAACACTGGAAGAGCGAGCCAAATCAAATTTCTCAGCGTGGAACTGTTGACAACTTGGACTCTGCCCCCAGGTTCCTGTGAGCACAGCAAAGACAGAGTCAGCAGTCGTGGAGATATCATGAGGCAGCTCAAAGGCAAACCCAAAAAAGAAACGTCCAAGGACAAGAAGGAACGTAAGCAGGCCATGCAGGAAGCCCGACAGCAGGTGGCCACTATTGTACTGCCTACACTAGCTGTAGTGGTGCTGCTCATCGTTGTCTTTGTCTATGTGGCCACCAGGCCTGGTGCTATAGAGTAGACATTCAAGTTCTGCTAAGAAGACATGAACTCCTAAACGGGCTTTGAAAACTGACAATGGCTATACCCAAAGGATTACCCCCATCATGTGACAACCTGTCTGAAAGCCATCCCCAAAGTGTGTTTCTTTGCTCTAAGAAGGATTGAAGCTGCCGAAAGAAGAAATCAAACTGAGCAGAGAAACAATTGCTCCTTAGTGCCTTCAGATAACATCATCTTCAACATCCATTTAATCCTGTTCATTTTAGAGCAGCGCATGCATTCATGTTGTCTTACAAAATTATGCAATATCATGCATAGCAAAGGACTCATGCACAGCTTGCCAAGTTTGACCAGAggtgttaaaaaaatgtctaaacTTTTGACTCGGTGctatttttaatatttcaagTCAATGCAACATGAGCCTGGTCTCTGACATGTACCACTCTTTGGACAGCACCCACGCCTATCTGTATGAATAGTATGTAGGAAAAGAAGGATTCAGTCTGCTCCTGCATTGTTGAACATCTAAATGCAGCTCTAGAGTATCTTATTGAATGTAATTGTCAAATATGTTCTCTTAAGTCCAGTatgttcaaacacacacaaatttctTCATCTTTAATGTGAATGTTACCCAATTTGTTTATATTAAGTTATTGACAACCATACCTTTGAGTTACTCATGACATCTGTGTGGATGTAAAAAGGTGCCT
>TU32081
GCCACGTCGAGCTCTGTGAGGAACAGCAGGTTTTTAACTTACTGTACTTTATCCTGTAACAAACCTGACGTCTGGGAGAAACACTGGAAGAGCGAGCCAAATCAAATTTCTCAGCGTGGAACTGTTGACAACTTGGACTCTGCCCGTTCCTGTGAGCACAGCAAAGACAGAGTCAGCAGTCGTGGAGATATCATGAGGCAGCTCAAAGGCAAACCCAAAAAAGAAACGTCCAAGGACAAGAAGGAACGTAAGCAGGCCATGCAGGAAGCCCGACAGCAGGTGGCCACTATTGTACTGCCTACACTAGCTGTAGTGGTGCTGCTCATCGTTGTCTTTGTCTATGTGGCCACCAGGCCTGGTGCTATAGAGTAGACATTCAAGTTCTGCTAAGAAGACATGAACTCCTAAACGGGCTTTGAAAACTGACAATGGCTATACCCAAAGGATTACCCCCATCATGTGACAACCTGTCTGAAAGCCATCCCCAAAGTGTGTTTCTTTGCTCTAAGAAGGATTGAAGCTGCCGAAAGAAGAAATCAAACTGAGCAGAGAAACAATTGCTCCTTAGTGCCTTCAGATAACATCATCTTCAACATCCATTTAATCCTGTTCATTTTAGAGCAGCGCATGCATTCATGTTGTCTTACAAAATTATGCAATATCATGCATAGCAAAGGACTCATGCACAGCTTGCCAAGTTTGACCAGAggtgttaaaaaaatgtctaaacTTTTGACTCGGTGctatttttaatatttcaagTCAATGCAACATGAGCCTGGTCTCTGACATGTACCACTCTTTGGACAGCACCCACGCCTATCTGTATGAATAGTATGTAGGAAAAGAAGGATTCAGTCTGCTCCTGCATTGTTGAACATCTAAATGCAGCTCTAGAGTATCTTATTGAATGTAATTGTCAAATATGTTCTCTTAAGTCCAGTatgttcaaacacacacaaatttctTCATCTTTAATGTGAATGTTACCCAATTTGTTTATATTAAGTTATTGACAACCATACCTTTGAGTTACTCATGACATCTGTGTGGATGTAAAAAGGTGCCTTAACAGATTTGCAGGTATTACttcagttaaataaaaaaatacaaatttaaaaattttGAGTTTGGTTAGTGTTTTAGAATTCTTAATAGATAAGCATTgaagccag
>XM_039791613.1
AGCGGTATAAGCCTTTCCACTGACTGCCACGTCGAGCTCTGTGAGGAACAGCAGGTTTTTAACTTACTGTACTTTATCCTGTAACAAACCTGACGTCTGGGAGAAACACTGGAAGAGCGAGCCAAATCAAATTTCTCAGCGTGGAACTGTTGACAACTTGGACTCTGCCCTATATTTTCTGGACCTGGTGGGGAAAGACCTTGATTGAAGAATGAATTTCCCTCACTGCCTAATCTAATGAGATTTGGTCTTTGGCCACCAGTCCCCCTGGTGTCCAAAAAAAtgCCAGGTTCCTGTGAGCACAGCAAAGACAGAGTCAGCAGTCGTGGAGATATCATGAGGCAGCTCAAAGGCAAACCCAAAAAAGAAACGTCCAAGGACAAGAAGGAACGTAAGCAGGCCATGCAGGAAGCCCGACAGCAGGTGGCCACTATTGTACTGCCTACACTAGCTGTAGTGGTGCTGCTCATCGTTGTCTTTGTCTATGTGGCCACCAGGCCTGGTGCTATAGAGTAGACATTCAAGTTCTGCTAAGAAGACATGAACTCCTAAACGGGCTTTGAAAACTGACAATGGCTATACCCAAAGGATTACCCCCATCATGTGACAACCTGTCTGAAAGCCATCCCCAAAGTGTGTTTCTTTGCTCTAAGAAGGATTGAAGCTGCCGAAAGAAGAAATCAAACTGAGCAGAGAAACAATTGCTCCTTAGTGCCTTCAGATAACATCATCTTCAACATCCATTTAATCCTGTTCATTTTAGAGCAGCGCATGCATTCATGTTGTCTTACAAAATTATGCAATATCATGCATAGCAAAGGACTCATGCACAGCTTGCCAAGTTTGACCAGAggtgttaaaaaaatgtctaaacTTTTGACTCGGTGctatttttaatatttcaagTCAATGCAACATGAGCCTGGTCTCTGACATGTACCACTCTTTGGACAGCACCCACGCCTATCTGTATGAATAGTATGTAGGAAAAGAAGGATTCAGTCTGCTCCTGCATTGTTGAACATCTAAATGCAGCTCTAGAGTATCTTATTGAATGTAATTGTCAAATATGTTCTCTTAAGTCCAGTatgttcaaacacacacaaatttctTCATCTTTAATGTGAATGTTACCCAATTTGTTTATATTAAGTTATTGACAACCATACCTTTGAGTTACTCATGACATCTGTGTGGATGTAAAAAGGTGCCTTAACAGATTTGCAGGTATTACttcagttaaataaaaaaatacaaatttaaaaattttGAGTTTGGTTAGTGTTTTAGAATTCTTAATAGATAAGCATTgaagccagaccatactccagcgtTGACACAGCACTGCTGAGATCTTGGGACACAAGACTAGGTagtatttaaatgtattcacTGAGCTTTAGTCTGGTTCTGATtacttatatttttatttgtaagtcCGTCCTGGTAAAATATGGTGTCTATCTGTTGCTTTAACTTATTCAGTCACATTTATGTGGGATTCAGTTGGTCCAGTGGAGGTTGGGTGTCAGAAGTGTTCGAATCTTAACACAGGGACTTCAAAAATGTGCATATTAACTCATAGACAGGGTGGGATGACACAGGTAGTGCTTAGATACTACTAAGTATTGTACTGTGTACTTTTATTGTACTTCTGTTGAGTACAGCTATAAACCTATTGGTTTACACTGaagatgtaaatctttaaaaacaacaaaagtatAGTTTAATTTTACTAAATTTCTTCTGAAACAGGTGCCCACTGTAGATTTTAACAAATGTTAACTTACTCAAACATTATAGTAATTGGGGCAGCAGGAcagtgtatgtgggattgagtcaaaaATAAAGTGTTGTTTCATGGCAATGAA
>XM_039791622.1
GTATAAGCCTTTCCACTGACTGCCACGTCGAGCTCTGTGAGGAACAGCAGGTTTTTAACTTACTGTACTTTATCCTGTAACAAACCTGACGTCTGGGAGAAACACTGGAAGAGCGAGCCAAATCAAATTTCTCAGCGTGGAACTGTTGACAACTTGGACTCTGCCCGTTCCTGTGAGCACAGCAAAGACAGAGTCAGCAGTCGTGGAGATATCATGAGGCAGCTCAAAGGCAAACCCAAAAAAGAAACGTCCAAGGACAAGAAGGAACGTAAGCAGGCCATGCAGGAAGCCCGACAGCAGGTGGCCACTATTGTACTGCCTACACTAGCTGTAGTGGTGCTGCTCATCGTTGTCTTTGTCTATGTGGCCACCAGGCCTGGTGCTATAGAGTAGACATTCAAGTTCTGCTAAGAAGACATGAACTCCTAAACGGGCTTTGAAAACTGACAATGGCTATACCCAAAGGATTACCCCCATCATGTGACAACCTGTCTGAAAGCCATCCCCAAAGTGTGTTTCTTTGCTCTAAGAAGGATTGAAGCTGCCGAAAGAAGAAATCAAACTGAGCAGAGAAACAATTGCTCCTTAGTGCCTTCAGATAACATCATCTTCAACATCCATTTAATCCTGTTCATTTTAGAGCAGCGCATGCATTCATGTTGTCTTACAAAATTATGCAATATCATGCATAGCAAAGGACTCATGCACAGCTTGCCAAGTTTGACCAGAggtgttaaaaaaatgtctaaacTTTTGACTCGGTGctatttttaatatttcaagTCAATGCAACATGAGCCTGGTCTCTGACATGTACCACTCTTTGGACAGCACCCACGCCTATCTGTATGAATAGTATGTAGGAAAAGAAGGATTCAGTCTGCTCCTGCATTGTTGAACATCTAAATGCAGCTCTAGAGTATCTTATTGAATGTAATTGTCAAATATGTTCTCTTAAGTCCAGTatgttcaaacacacacaaatttctTCATCTTTAATGTGAATGTTACCCAATTTGTTTATATTAAGTTATTGACAACCATACCTTTGAGTTACTCATGACATCTGTGTGGATGTAAAAAGGTGCCTTAACAGATTTGCAGGTATTACttcagttaaataaaaaaatacaaatttaaaaattttGAGTTTGGTTAGTGTTTTAGAATTCTTAATAGATAAGCATTgaagccagaccatactccagcgtTGACACAGCACTGCTGAGATCTTGGGACACAAGACTAGGTagtatttaaatgtattcacTGAGCTTTAGTCTGGTTCTGATtacttatatttttatttgtaagtcCGTCCTGGTAAAATATGGTGTCTATCTGTTGCTTTAACTTATTCAGTCACATTTATGTGGGATTCAGTTGGTCCAGTGGAGGTTGGGTGTCAGAAGTGTTCGAATCTTAACACAGGGACTTCAAAAATGTGCATATTAACTCATAGACAGGGTGGGATGACACAGGTAGTGCTTAGATACTACTAAGTATTGTACTGTGTACTTTTATTGTACTTCTGTTGAGTACAGCTATAAACCTATTGGTTTACACTGaagatgtaaatctttaaaaacaacaaaagtatAGTTTAATTTTACTAAATTTCTTCTGAAACAGGTGCCCACTGTAGATTTTAACAAATGTTAACTTACTCAAACATTATAGTAATTGGGGCAGCAGGAcagtgtatgtgggattgagtcaaaaATAAAGTGTTGTTTCATGGCAATGAA
>XM_039791633.1
AGCGGTATAAGCCTTTCCACTGACTGCCACGTCGAGCTCTGTGAGGAACAGCAGGTTTTTAACTTACTGTACTTTATCCTGTAACAAACCTGACGTCTGGGAGAAACACTGGAAGAGCGAGCCAAATCAAATTTCTCAGCGTGGAACTGTTGACAACTTGGACTCTGCCCCCAGGTTCCTGTGAGCACAGCAAAGACAGAGTCAGCAGTCGTGGAGATATCATGAGGCAGCTCAAAGGCAAACCCAAAAAAGAAACGTCCAAGGACAAGAAGGAACGTAAGCAGGCCATGCAGGAAGCCCGACAGCAGGTGGCCACTATTGTACTGCCTACACTAGCTGTAGTGGTGCTGCTCATCGTTGTCTTTGTCTATGTGGCCACCAGGCCTGGTGCTATAGAGTAGACATTCAAGTTCTGCTAAGAAGACATGAACTCCTAAACGGGCTTTGAAAACTGACAATGGCTATACCCAAAGGATTACCCCCATCATGTGACAACCTGTCTGAAAGCCATCCCCAAAGTGTGTTTCTTTGCTCTAAGAAGGATTGAAGCTGCCGAAAGAAGAAATCAAACTGAGCAGAGAAACAATTGCTCCTTAGTGCCTTCAGATAACATCATCTTCAACATCCATTTAATCCTGTTCATTTTAGAGCAGCGCATGCATTCATGTTGTCTTACAAAATTATGCAATATCATGCATAGCAAAGGACTCATGCACAGCTTGCCAAGTTTGACCAGAggtgttaaaaaaatgtctaaacTTTTGACTCGGTGctatttttaatatttcaagTCAATGCAACATGAGCCTGGTCTCTGACATGTACCACTCTTTGGACAGCACCCACGCCTATCTGTATGAATAGTATGTAGGAAAAGAAGGATTCAGTCTGCTCCTGCATTGTTGAACATCTAAATGCAGCTCTAGAGTATCTTATTGAATGTAATTGTCAAATATGTTCTCTTAAGTCCAGTatgttcaaacacacacaaatttctTCATCTTTAATGTGAATGTTACCCAATTTGTTTATATTAAGTTATTGACAACCATACCTTTGAGTTACTCATGACATCTGTGTGGATGTAAAAAGGTGCCTTAACAGATTTGCAGGTATTACttcagttaaataaaaaaatacaaatttaaaaattttGAGTTTGGTTAGTGTTTTAGAATTCTTAATAGATAAGCATTgaagccagaccatactccagcgtTGACACAGCACTGCTGAGATCTTGGGACACAAGACTAGGTagtatttaaatgtattcacTGAGCTTTAGTCTGGTTCTGATtacttatatttttatttgtaagtcCGTCCTGGTAAAATATGGTGTCTATCTGTTGCTTTAACTTATTCAGTCACATTTATGTGGGATTCAGTTGGTCCAGTGGAGGTTGGGTGTCAGAAGTGTTCGAATCTTAACACAGGGACTTCAAAAATGTGCATATTAACTCATAGACAGGGTGGGATGACACAGGTAGTGCTTAGATACTACTAAGTATTGTACTGTGTACTTTTATTGTACTTCTGTTGAGTACAGCTATAAACCTATTGGTTTACACTGaagatgtaaatctttaaaaacaacaaaagtatAGTTTAATTTTACTAAATTTCTTCTGAAACAGGTGCCCACTGTAGATTTTAACAAATGTTAACTTACTCAAACATTATAGTAATTGGGGCAGCAGGAcagtgtatgtgggattgagtcaaaaATAAAGTGTTGTTTCATGGCAATGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32075 False 1069 lncRNA 0.50 2 43770724 43789410
TU32080 False 1073 lncRNA 0.47 2 43770724 43789410
TU32081 False 1175 lncRNA 0.50 2 43770618 43789410
XM_039791613.1 True 1871 mRNA 0.40 3 43770066 43789435
XM_039791622.1 False 1748 mRNA 0.39 2 43770066 43789431
XM_039791633.1 False 1756 mRNA 0.39 2 43770066 43789435

Neighbor

gene id symbol gene type direction distance location
LOC120570616 LOC104946633,LOC103355253,LOC102792009,LOC102302768,LOC102198488 coding downstream 191655 43566580 ~ 43578411 (-)
LOC120553532 NA coding downstream 386853 43381126 ~ 43383213 (-)
efhd1 efhd1,LOC100691052,LOC101463816,LOC102780618,LOC103377704 coding downstream 706821 42992791 ~ 43063245 (-)
LOC120549271 NA coding downstream 859329 42904813 ~ 42910737 (-)
gal3st2 LOC104950586 coding downstream 1001500 42739636 ~ 42768566 (-)
omgb omg coding upstream 293650 44083085 ~ 44087251 (-)
LOC120574562 NA coding upstream 305413 44094848 ~ 44098473 (-)
LOC120574575 NA coding upstream 309528 44098963 ~ 44114071 (-)
LOC120551889 NA coding upstream 948426 44737861 ~ 44739433 (-)
trnah-gug NA coding upstream 1121392 44910827 ~ 44910898 (-)
G23730 NA non-coding downstream 56489 43713342 ~ 43713577 (-)
G23728 NA non-coding downstream 58958 43710552 ~ 43711108 (-)
G23706 NA non-coding downstream 99791 43669946 ~ 43670275 (-)
LOC120545612 NA non-coding downstream 100405 43668431 ~ 43669661 (-)
G23690 NA non-coding downstream 171844 43597991 ~ 43598222 (-)
LOC120549487 NA non-coding upstream 11785 43801220 ~ 43803888 (-)
G23759 NA non-coding upstream 33632 43823067 ~ 43823415 (-)
G23799 NA non-coding upstream 347937 44137372 ~ 44137752 (-)
G23811 NA non-coding upstream 432777 44222212 ~ 44226539 (-)
G23906 NA non-coding upstream 984770 44774205 ~ 44774439 (-)
LOC120553425 NA other downstream 53325 43700971 ~ 43716741 (-)
LOC120574039 nlk,nlk2 other downstream 423393 43236682 ~ 43346673 (-)
cntn5 NA other downstream 1603029 42029673 ~ 42167037 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other downstream 3299890 40290005 ~ 40470176 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other downstream 3736910 39943571 ~ 40033156 (-)
mrps23 mrps23 other upstream 1027193 44816628 ~ 44824993 (-)
bet1l bet1l other upstream 3345419 47134854 ~ 47142596 (-)
dhx34 dhx34,LOC102778731 other upstream 3506119 47295554 ~ 47325453 (-)
nectin1b nectin1,LOC102782356 other upstream 4367918 48157353 ~ 48398620 (-)

Expression


Co-expression Network