G23977


Basic Information

Item Value
gene id G23977
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 45003434 ~ 45005501 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU32347
tttatattatttcaaattgttttgtatacttcttcaaaaataaaatggaaacttgttttggggagaataaaattactctgggctgagttgtCCTAGtaaccaaaaaggctcaggatgctgcaaatgttggtataatatgaacatggctggtggatttaagacaaaaaataataatttattgaatgaatcaaatttgaacatatgtgtcagtggcttgttgatctttacattgttagttaatttcctatcctggcctgggacacacattcatacggtttgataaagtacttattggactttaacttatcattgcacttacaataacgagcgtagctgtcctcagtttaggtcatcctgtacgtctccTCTCCGGCTTTTCCTGCATCTacgcgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtcagtCACAGGGAGAACTGaacagccccgcccgctgcagagagccaaaaggattgaaacagcagcagctttcagcgactttatagtgaaaaaatatcacagcgtacattgatattaaaatgtatacaggttggcaggacggtctgaaattgtctttcgctgtacatttttttggtaaatgtgagatgttcgagtcgcacatgtctcgtcttcatatcagaaacaaggaaattaattcactcccgcttggtcattggctctcagagtcccatactgatacaaagtctggcacgtgggactgctgggattggttgaagtcacaggaaactccggttattggtcaaatttgtggAAAAGTTgcagtgattggtcaaaattgtgaGTCGCACCAAATTCACGTGATTGgttgtaacgagtaacgatgcagcacataaaacatgtatcaaagtaaaagtattaaactcattgaaaatatgtactcaagtaaaagtggaagtaggaggaaaacataatactccagtagagtacagatacagccttttagtacttaagtacagtagtgaagtagttctacttcgttactatacatctTTGGACGTTTGAAGTAGGGGAGCAGAGGGTGCAATAAATAAGGTCTTATGATTCTTATTACAAACGTTCTGATCAGTCAGAATAGGCGTGTTTTGAAATATAAATAGCTATTTATGAGTTTTGTGGGCTAATGCACAAGAAGCCTAATTCTCCTTTACAATAATTCACAACATTTACAATCAGGGAGGCAAACTCATAAAAATACACAATAATTAAGATCAGTTTATATGATGGAATAGGGGCATTAAAATGTGTCAGAGGACACCAAATTTGGGCTTTTATGGACAAAAAAATTGGCTGATAAAACTTGAGAACTCTTACTGAACGGAACTGGTTACTTGTTGTTACTTATAAGGTGAGTCACGTCTTCATGTATAATTAATTCTAAAGTAGATCATTTCTGCGTTTGGTCTCATATTTATTCACTACGCTGTTGCTTTGTGTGTTAACACCTGCACAGTATGCCGGTAACAACATTCGGTAACTACATTCTAGCATCTGCTTCCAGTGATTAGGCTAAGTAAGGCTAACCACACACTGACTTCAGCATGAAattgttaaataaatatattttctcaCCCTCAGAAAGACAGCAAATTAGGCATTTTCACTAGAGTGATGAACCACAAAGAATCCCAGgcagttttttatttatattttagaaTGACAagctttatttcatttatatacaACATGCAGAATTAAAGAGACAGACATTTTGATTTGTATATGGTTTACCATCGTCAGTTTTGTGTAACACCTTTAATTCAAAAACTTTTAGCGACATCCCATGCGTTGTTTTTGAAGCAAAAGGAAAATGTGCACCAAAGTAAGATGTTGTTAAAATTGCCATCGCCTGTTTGGAAATTGCGTCTAAATTCAGACCATTACTGTtgctcacacatacagtatgtatcccAGCTCGTGTGATGACAATGATAATATTAACCTATTTTTGATTCATTGTAAGTACTGATTAAGCTACTTCACAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32347 True 2068 lncRNA 0.50 1 45003434 45005501

Neighbor

gene id symbol gene type direction distance location
phf12b phf12 coding downstream 16808 44968198 ~ 44986626 (-)
trnah-gug_5 NA coding downstream 76978 44926385 ~ 44926456 (-)
trnah-aug NA coding downstream 77275 44926087 ~ 44926159 (-)
trnah-gug_4 NA coding downstream 77876 44925487 ~ 44925558 (-)
trnar-acg_8 NA coding downstream 78174 44925188 ~ 44925260 (-)
myo18ab myo18a,LOC101474105 coding upstream 490036 45495537 ~ 45664024 (-)
LOC120549281 NA coding upstream 659879 45665380 ~ 45681164 (-)
LOC120548432 NA coding upstream 689701 45695202 ~ 45767319 (-)
wsb1 wsb1 coding upstream 779099 45784600 ~ 45808422 (-)
cuedc1b cuedc1 coding upstream 809581 45815082 ~ 45861092 (-)
G23964 NA non-coding downstream 4217 44998977 ~ 44999217 (-)
G23949 NA non-coding downstream 37464 44965739 ~ 44965970 (-)
LOC120549064 NA non-coding downstream 119096 44880670 ~ 44884338 (-)
LOC120549067 NA non-coding downstream 122925 44866130 ~ 44880509 (-)
G23911 NA non-coding downstream 187058 44812153 ~ 44816376 (-)
G23986 NA non-coding upstream 313106 45318607 ~ 45318882 (-)
G23990 NA non-coding upstream 325231 45330732 ~ 45330998 (-)
G23996 NA non-coding upstream 333005 45338506 ~ 45338872 (-)
G24036 NA non-coding upstream 462661 45468162 ~ 45468385 (-)
G24037 NA non-coding upstream 464358 45469859 ~ 45470303 (-)
mrps23 mrps23 other downstream 178441 44816628 ~ 44824993 (-)
smco4 NA other downstream 1213999 43770066 ~ 43789435 (-)
LOC120553425 NA other downstream 1286693 43700971 ~ 43716741 (-)
LOC120574039 nlk,nlk2 other downstream 1656761 43236682 ~ 43346673 (-)
cntn5 NA other downstream 2836397 42029673 ~ 42167037 (-)
bet1l bet1l other upstream 2129353 47134854 ~ 47142596 (-)
dhx34 dhx34,LOC102778731 other upstream 2290053 47295554 ~ 47325453 (-)
nectin1b nectin1,LOC102782356 other upstream 3151852 48157353 ~ 48398620 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G290209 dhcr7 non-coding NW_019172775.1 APWO02002373.1 21654 ~ 22735 (-)