LOC120570595


Basic Information

Item Value
gene id LOC120570595
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 46696475 ~ 46700490 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU32750
CAAACTGTCATATGTTAGTGAATGAGTTTGGAGGAAGCAGCCGCGGCGGCGGAGGGCAAGCAGCGCGGAGGGGAGAGGCGCACACTTTTTTCAGCTGCTGAGCAAAGTGTCTTCTGGGCATGAGGGGGGCATGGAGGAGGAATCTGAGCAGGAAAGAGACACAATGCCTCCGCCGCTGCAGTACTGCaactgagtgagtgagtgtggggGTACGGCGGAGGCAAGGCCGGGGCTTTGGAATAGAGACTGATCCGAGCAGGCTGTGAGAGTCGGGCTGTGTGACGTTACAAGCCGGGCCGGTGAGGCCGGGCAGGCTGCCGGGGGGACAGAGCGTGACTCCGGGAACACAGAGACAAATATCAGCCCCGGACTGGAGCTTTGATCAACTGAGCGTaccgggggggtggggggtgtcgGTCCGCTGCTCTTCTCCTGCAGTCTCTCTGCACGGTGgtttaatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctttttacaAAGGAATATTGCAAACATGCGCTGATATTCATAATTCATAATGCGTTAATTGTGCCTTATGAATGCGTTTATTTTTAGGAATAAACAGCCCCATTTCTGTTAAAACTGGCCCAGTTAATATCATttgtataatgtttttttttctccatctctaTTCCTATTAAAAACCACAAAGTTGGAATAGGGGAAATTATTCGAAGGTGCAGCTTTGGCAAAATGGGCATCTTTtttaaaaggaagaaagaaagaaaattgaaaAGCTCATGAGAAATAAGACAGGAATGACTTCATTTTATTTCGTTGCATTGTTTGTAAGTCACTTTAGACAAAAGTGTGCACATGGATGTAATGTGACATAATTTACACGCAATTACAAACAAAGAGGATTCTTTGAAACGAAAACACGTATAAAAATACACCTTTCctcagaaagaaaataaaaaaacgcattTTTGCCAGTAACGAAAAACAGTCTCAGAATTAATCTGTGCTTTTTTAAAAGCAGTATTTCTACGTAACAAAGTGATCACTTATGTCTACTCTTCTCTTGGCGGCGCAAAGAGCATGAAAAGCGCGCACATTTTTGACACAAAGTTCCCCATCATGTTCTTCAACTGTGGGTGGGTTTGTAGAGCAGGAGAGGATGGAGAAGGGCGGGGTTCACTttcccctccatccatccatccatccatccatccatccatccatccatccaaatcagaatcagaaaggtgTTTATTGCCCCAGTTACCCTACGTGGAATTCGCCTTGgtgattggtgcatacatacacaaacaaacataaacatgAATAAGAAAGAGACactccatccatctatccatccatcccgTTGCGCGGTGCTGACTGTGGAGCTGTGTACGCAGTTCAACAATCGACTGGCTGAG
>XR_005641086.1
GCAAACTGTCATATGTTAGTGAATGAGTTTGGAGGAAGCAGCCGCGGCGGCGGAGGGCAAGCAGCGCGGAGGGGAGAGGCGCACACTTTTTTCAGCTGCTGAGCAAAGTGTCTTCTGGGCATGAGGGGGGCATGGAGGAGGAATCTGAGCAGGAAAGAGACACAATGCCTCCGCCGCTGCAGTACTGCaactgagtgagtgagtgtggggGTACGGCGGAGGCAAGGCCGGGGCTTTGGAATAGAGACTGATCCGAGCAGGCTGTGAGAGTCGGGCTGTGTGACGTTACAAGCCGGGCCGGTGAGGCCGGGCAGGCTGCCGGGGGGACAGAGCGTGACTCCGGGAACACAGAGACAAATATCAGCCCCGGACTGGAGCTTTGATCAACTGAGCGTaccgggggggtggggggtgtcgGTCCGCTGCTCTTCTCCTGCAGTCTCTCTGCACGGTGgtttaatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctttttacaAAGGAATATTGCAAACATGCGCTGATATTCATAATTCATAATGCGTTAATTGTGCCTTATGAATGCGTTTATTTTTAGGAATAAACAGCCCCATTTCTGTTAAAACTGGCCCAGTTAATATCATttgtataatgtttttttttctccatctctaTTCCTATTAAAAACCACAAAGTTGGAATAGGGGAAATTATTCGAAGGTGCAGCTTTGGCAAAATGGGCATCTTTtttaaaaggaagaaagaaagaaaattgaaaAGCTCATGAGAAATAAGACAGGAATGACTTCATTTTATTTCGTTGCATTGTTTGTAAGTCACTTTAGACAAAAGTGTGCACATGGATGTAATGTGACATAATTTACACGCAATTACAAACAAAGAGGATTCTTTGAAACGAAAACACGTATAAAAATACACCTTTCctcagaaagaaaataaaaaaacgcattTTTGCCAGTAACGAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32750 True 1444 lncRNA 0.46 3 46696475 46700489
XR_005641086.1 False 1009 lncRNA 0.46 3 46696911 46700490

Neighbor

gene id symbol gene type direction distance location
akap1b akap1 coding downstream 791468 45872223 ~ 45905007 (-)
cuedc1b cuedc1 coding downstream 835383 45815082 ~ 45861092 (-)
wsb1 wsb1 coding downstream 888053 45784600 ~ 45808422 (-)
LOC120548432 NA coding downstream 929156 45695202 ~ 45767319 (-)
LOC120549281 NA coding downstream 1015311 45665380 ~ 45681164 (-)
exosc5 exosc5 coding upstream 417907 47118397 ~ 47134701 (-)
psmd8 psmd8,LOC102787089 coding upstream 443251 47143741 ~ 47150610 (-)
ehd2b ehd2 coding upstream 457555 47158045 ~ 47170349 (-)
bicra gltscr1 coding upstream 471737 47172227 ~ 47188363 (-)
bckdha bckdha,LOC102788451 coding upstream 515371 47215861 ~ 47225227 (-)
G24301 NA non-coding downstream 5793 46690447 ~ 46690682 (-)
G24297 NA non-coding downstream 29409 46666470 ~ 46667066 (-)
G24295 NA non-coding downstream 48632 46647605 ~ 46647843 (-)
G24294 NA non-coding downstream 49508 46646646 ~ 46646967 (-)
G24293 NA non-coding downstream 69157 46627114 ~ 46627318 (-)
G24317 NA non-coding upstream 24176 46724666 ~ 46725013 (-)
G24326 NA non-coding upstream 33359 46733849 ~ 46735392 (-)
G24327 NA non-coding upstream 41630 46742120 ~ 46742399 (-)
G24336 NA non-coding upstream 114283 46814773 ~ 46815283 (-)
G24341 NA non-coding upstream 137161 46837651 ~ 46838864 (-)
mrps23 mrps23 other downstream 1871482 44816628 ~ 44824993 (-)
smco4 NA other downstream 2907040 43770066 ~ 43789435 (-)
LOC120553425 NA other downstream 2979734 43700971 ~ 43716741 (-)
LOC120574039 nlk,nlk2 other downstream 3349802 43236682 ~ 43346673 (-)
cntn5 NA other downstream 4529438 42029673 ~ 42167037 (-)
bet1l bet1l other upstream 434364 47134854 ~ 47142596 (-)
dhx34 dhx34,LOC102778731 other upstream 595064 47295554 ~ 47325453 (-)
nectin1b nectin1,LOC102782356 other upstream 1456863 48157353 ~ 48398620 (-)

Expression


Co-expression Network