LOC120543728


Basic Information

Item Value
gene id LOC120543728
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8622482 ~ 8638087 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039776935.1
gagagagacagactgacagacagacagacagaaagagagagagacagggagagagagagacagaaacagagagacagaaagagataaaaaagaGACGAAGAAATGCTGCTGTCCTCCTATTTGACTCTCTGCATTCTGCTCAGCTGCTCGGTTCTCACTGAAAGTTCAGTGTTCTTGGAGCGgccggcagcaggtcagatcctGCGCGTGGTGTCCCGGCGGCGCCGAGCCAACTCCTTCTTCCTGGAGGAAATGTTGCCCGGAGACCTGGAGCGGGAATGTCACGAAGAGCGCTGCTCGCAGGAAGAGGCCTCCGAGATCTTCAGGACCACCGAGAAGACGATGGAGTTCTGGTACAAATACACTAATCTGGACCCGTGTCAGACCAATCCCTGTCAGAACGGAGGCATCTGCACTCTGGACCGCGGACACTTCCTGTGTCTCTGTTCCCCGCAGTACAGCGGCAAGACCTGCGAATCAGAGGTGTTGCAGTGTTACTACAGAAACGGACGCTGTATGCAGTACTGCTCCAACCTGCCGGGGGGCGCTGGAGTTCAGTGTAGCTGCGCTGACGGATACAAACTGGACCCTGATGGACGCAGCTGCTCCGAGACTGTGGCGTTCCCCTGTGGCCGACAGCAGCAGTCAGCTCTGTCATCGTACCAAAGTCGCTCTGACCGAGTCACCATGGAGATGGACGCCATGTTGGACGCCAACAGCACCGATGGCTGGGCGGCGATCCTGCAGAACGCAATGGAGATGGAGGACGAGCTGCTGGCGAATCAAACGTCTGCACGGAGCGACAACGGGACGGTGGGGATGACGCTGCGTATCGTGGGGGGGGTCCTGGATAAACCGGGGGGGAGTCCCTGGCAGgTTCTGCTCCGCAGGTCTGATGGTTATGGTTTCTGTGGAGGAACTCTGGTTTCCGATCGTTGGGTCATCTCTGCTGCTCACTGCCTCGAGGAGACTGTAGACCATGTGACGATAGgtgatTATGATAAGCAGCGTCCTGATCCAGGTGAACAGCTGATTAAAGTCCAGAAGGTTGTCGTCCATCCTCACTTCCACTCCTTCACCTTCGACAGCGACATTGCTCTGCTGTTACTGGCCCAGCCCGTTGCCCGGGGCAACACTGCCATCCCCGCCTGCCTGCCTGACCCCCACCTCTCCACTTACCTGCTGCAGGCGGGAAACCGCGGTGTGGTGACAGGCTGGGGGCTCACGCAACACCTGGGTCGGTCGTCCCGCTTTCTCAGGAAGGTGACGCTTCCTGTCGTAAGCTACACAGAATGCATCGCTTCCACTGAACAGgtgatAACAGACAACATGTTCTGTGCcgggtacctgtctgtctctcaggacGCCTGCAGCGGAGACAGCGGTGGTCCGTTCCTGGTCAACTACCGAGGAACCTGGTTCCTGACCGGCGTGGTCAGCTGGGGGGAGAAGTGTGCCGCTGTTGGCAAGTTCGGGGTCTATACCCGCCTGGGCAACTTCCTGTCCTGGATCAGAGACAccatgagacagagagacatggTAGACCCACGTGGGTTTAGGGACACCGTGGACACACCGGGGCTCAGAGACACCGTGGACACACTGGAGCTCAGAGAGACCGTGGACACACTGGGGCTCAGAAAGACCGTGGACACACCGGGGCTCAGAGAGACCGTGGACACACCGGAGCTCAGAGAGACCGTGGACACACCGGGGCTCAGAGAGACCGTGGACACACCGGGGCTCAGAGAGACCGTGGACACACCGGGGCTCAGAGAGACCGTGGACACACCGGAGCTCAGAGAGACCGTGGACACACCGGAGCTCAGAGAGACCGTGGACACACCGGGGCTCAGAGAGACCGTGGACACACCGGAGCTCAGAGAGACCGTGGACACACCGGAGCTCAGAGAGACCGTGGACACACCGGGGCTCAGAGAGACCGTGGACACACCGGGGCTCAGAGAGACCGTGGACACACCGGGGCTCAGAGAGACCGTGGACACACCGGGGCTCAGAGAGACCGTGGACACACCGGAGCTCAGAGAGACCGTGGACACACCGGGGCTCAGAGAGACCGTGGACACACCGGAGCTCAGAGAGACCGTGGACACACCGGGGCTCAGAGAGACCGTGGACACACCGGGGCTCAGAGAGACCGTGGACACACCGGGGCTCAGAGAGACCGTGGACACACCGGGGCTCAGAGAGACCGTGGACACACCGGGGCTCAGAGAGACCGTGGACACACCGGAGCTCAGAGACACCGTAGACCCCGTGGACTCAGGGCTCAGAGATACCCATCTTAAAGGGACCGAGAGCCAAAACACAGGAACAATCAGACCGGAGCTCAGAGACACCGTGGATCTTTATGTCTGACAAAAAATTGACAACAGCAACACAGCAGTGGAGAAGTggcagaaacaacaacaaaaatgttaaaaaaaggaacaaatgaAGTTGTTCTTCTTGACCTTATGTGTCAAGAACAAACCTCCAGTGGGACCAACCCAACACCACGTAGAGCTGGCACACAAACGCCGAAAAAAGACACAAACGTTGAAGAAAGTGACGTAAACGTCACAGGTTCTGTTCCGTTCACCTTCattgattgttttatttaaactttttgttgcttttcgaTCTTTTTTTCGTCACCTTTAGTCACATTTTTTACAACCTTTCTGCTTTTTATTCCTGACATTTTGAACCATGAACAGACCGGACAAAGACCATCTGCAGGACATACAGGAGACAAAGACCATCTGCAGGACATACACGAGACAAAGACCATCTACAGGACATACAGGAGACAAAGACCATCTGCAGGA

Function

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039776935.1 True 2831 mRNA 0.57 10 8622482 8638087

Neighbor

gene id symbol gene type direction distance location
LOC120543874 LOC101482597,LOC103360230,LOC107102854 coding downstream 230205 8369769 ~ 8392277 (-)
LOC120543856 NA coding downstream 524018 8079224 ~ 8098464 (-)
LOC120543635 NA coding downstream 559141 8022628 ~ 8063341 (-)
LOC120551059 NA coding downstream 636055 7983094 ~ 7986427 (-)
LOC120551046 LOC106510929 coding downstream 907445 7712652 ~ 7715037 (-)
LOC120543940 NA coding upstream 44576 8682663 ~ 8684484 (-)
LOC120543840 LOC100693035,LOC101486393,LOC103152962,LOC103475253,LOC106951493 coding upstream 190326 8828413 ~ 8841376 (-)
atg16l1 atg16l1 coding upstream 211403 8849490 ~ 8880046 (-)
LOC120554466 NA coding upstream 216225 8854312 ~ 8854592 (-)
LOC120554461 NA coding upstream 222274 8860361 ~ 8860640 (-)
G15783 NA non-coding downstream 22169 8551591 ~ 8600313 (-)
G15793 NA non-coding downstream 39922 8580621 ~ 8582560 (-)
G15768 NA non-coding downstream 118328 8503932 ~ 8504154 (-)
LOC120544083 NA non-coding downstream 138113 8483166 ~ 8484369 (-)
G15446 NA non-coding downstream 283102 8339161 ~ 8339380 (-)
LOC120544089 NA non-coding upstream 33930 8672017 ~ 8672342 (-)
G15807 NA non-coding upstream 58658 8696745 ~ 8697146 (-)
G15809 NA non-coding upstream 97402 8735489 ~ 8744346 (-)
G15812 NA non-coding upstream 112324 8750411 ~ 8750948 (-)
G15819 NA non-coding upstream 139943 8778030 ~ 8778542 (-)
G15757 NA other downstream 152722 8468357 ~ 8469760 (-)
LOC120551075 LOC103475274,LOC105922519 other downstream 467179 8137301 ~ 8155303 (-)
trnaa-cgc NA other downstream 686155 7936256 ~ 7936327 (-)
lrch3 lrch3 other downstream 1278589 7309914 ~ 7343893 (-)
LOC120544114 NA other downstream 1411116 7207735 ~ 7211366 (-)
LOC120544569 dgkd,LOC102780004 other upstream 53987 8692074 ~ 8742123 (-)
spint2 NA other upstream 242351 8880438 ~ 8914977 (-)
G15820 NA other upstream 333827 8971914 ~ 9046433 (-)
LOC120543625 NA other upstream 492897 9130984 ~ 9210517 (-)
G15903 NA other upstream 599880 9237967 ~ 9238784 (-)

Expression


Co-expression Network