atg16l1 (atg16l1)


Basic Information

Item Value
gene id atg16l1
gene name atg16l1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8849490 ~ 8880046 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039776975.1
CGTGCGACCTTCCAGGAAGTAGGACTGCGAGCTGGAGCCGTGCGGTAGATGATGTCGTTAAAGAAGAGAAACGGGACCTTTAAACACCGAACACCGTGAGAATCACCGACCGAGGCCACCGGGGCACCGGTAGAGGAGACGAGCCACAGTCCGGGACCCAGTTAGATGCTgtggTCATGGCTGAGCGGAGGGTGGAGTGTACGTGGAAGAGACACATCTCGGAGCAGCTGAAGCTCAGAGACCGAGTCCAGAGACAGGCCTTCGAGGAGATCATCCACCAGTataACCGACTGCTGGAGAAGTCAGACCTGCAGGCTGTCCTATCAGAGAGATACCAGACAGACAAGTATGACGTCCAGAGGGGACACGAGGCCGGGTCGGGGACAGACTCCAGTCGTAGTGATGCCCTGCAGCAGGAGATGTCTCAGATGAGAATCCGACACCAGGAGGAGCTGACGGAGCTGCACAAGAAACGGGGAGAGcTGGCTCAGAGTGTGATCGAACTGAACAACCAGATTCAAATGAAGGACAAAGAGATCCAGAGCAATCAGGCcaggaTGTTGGAGTACCAGCAGCAGATGGCCAGTCTGGAGGTAGACTGTCGGGAGCTGAGGAACTTCCTGCAGGACCTGGAGAGAGCcaatcagacgctgaaggacgaGTACGACGCGCTGCAGATCACCTTCTCAGCGCTGGAGGAGAAGCTGCGTAAGACCACCGAGGACAACCAGGAGCTGGTGTCCCGCTGGATGGCCGAGAAGGCTCAGGAGGCCAACAAGCTCAACGCTGAGAACGAGAAGGacagcagACGCAGACAGGCCAAGCTGCAGAAGGAACTGGCCGACGCAGCCAAAGAGCCTCTACCTATCGACCCagacGATGACATCGAGGTTTTGGCGGAGGACGGAGGGAAAGGAGGTGGCGGTGGTGGTGAGACGTCTCCCAACAGACCGCTGAGCAGAACTCCCAGtaagAAGAACTCTCAGCCTCCTCCGGCCGGTCTGCTGGACTCCATCTCCAACATATTTGGagtGTCTGAGTGTGTTGATCCTGGACTGGTCTCAGCTCCCTGCagGCGTCGCCCTGGAAACGCTTTCAACACGTCTCCTGAAAACACAGAAGCTCCTTCAGGAGTGTGTGCCGAGGTTCGAGTCCCGTCCACGGCGCTGCACGTCTTCgATGCCCATGACGGCGAGGTGAACGCCGTGCGGTTCAGCCCCGGCTCTCGTCTCCTAGCAACAGGAGGGATGGACCGGAGGGTTAAGCTGTGGGAGGTCGTGGCCGGTCGCTGTGAGCCGAAAGGAGCTCTGACCGGCAGCAACGCTGGAATCACCAGCATTGAGTTTGACAGCGCTGGCTCGTACCTGCTCGCGGCCTCCAATGACTTCGCCAGTCGGATCTGGACCGTAGACGACTACAGGCTGAGGcatACGTTGACAGGTCACAGTGGGAAGGTGCTGTCCGCTCGCTTCCTATTGGACAACGCTCGAATCGTCTCCGGGAGCTACGACCGAACACTCAAACTCTGGGACCTGCGCAGCAAAGTCTGTATGAAGACAGTGTTTGCCGGCTCCAGCTGTAATGACATTGTGTGCACGGAGCAGTGTGTGATGAGTGGACACTTTGATAAGAAAGTTCGGTTCTGGGACATCAGggctgAGACCATAGTCCAGGAGCTGGAGCTGCAGGGCAGGGTGACCTCTCTGGACCTGAACCACGACCGGACCGAACTGCTCAGCTGCTCCAGAGACGACCTGCTCAAGATCATAGACCTGAGAACCAACGCTGTCAGACACACCTTCAGtgCTCCAGGCTTTAAGTGTGGCGCTGACTGGACCAGAGTAACTTTCAGtcctGACGGTAGCTATGTGGCCGGAGGATCAGCTGACGGAGCTCTCTACATCTGGAACGTTCTGACGGGGAAAGTGGAACGAACTCTGGACCGGAACCACAActCGGCCATCAACTCGGTGTCCTGGTCTCCTTCAGGAGCCTACGTCGCCAGTGTGGAGAAGGGCAGCAAGGCCGTCCTCTGGTCGGACATGTGATTGGCCGAGACCCAAGGAGATGGGCGGAGACAGAGACGGGTGGAGACAGAAGGAGACAGCCAGGCTGAGACGGGTGGAGACAGCCAGGCTGAGACGGGTGGAGACAGCCAGGCTGAGACGGGTGGAGACAGCCAGGCTGAGATGGGGGGAGACAGAGcaggatgtttgtgtgttggcTGAGACGGGTGGAGACAGAACGGAGACGGGTGGAGACAGAGCAGGACGTTGGTGTGTTTTGTGGACGATGAGACATTTGATGAActcggacagacagacagagacgatGCTGTCGCTCAGCTTCAATCTGACCTTTCTCTTTTATTTCAGAGAGGAATCAAACACACCCAGAGTTAATAATAAAGGCTTTATTAACCCTAA
>XM_039776983.1
CGTGCGACCTTCCAGGAAGTAGGACTGCGAGCTGGAGCCGTGCGGTAGATGATGTCGTTAAAGAAGAGAAACGGGACCTTTAAACACCGAACACCGTGAGAATCACCGACCGAGGCCACCGGGGCACCGGTAGAGGAGACGAGCCACAGTCCGGGACCCAGTTAGATGCTgtggTCATGGCTGAGCGGAGGGTGGAGTGTACGTGGAAGAGACACATCTCGGAGCAGCTGAAGCTCAGAGACCGAGTCCAGAGACAGGCCTTCGAGGAGATCATCCACCAGTataACCGACTGCTGGAGAAGTCAGACCTGCAGGCTGTCCTATCAGAGAGATACCAGACAGACAAGTATGACGTCCAGAGGGGACACGAGGCCGGGTCGGGGACAGACTCCAGTCGTAGTGATGCCCTGCAGCAGGAGATGTCTCAGATGAGAATCCGACACCAGGAGGAGCTGACGGAGCTGCACAAGAAACGGGGAGAGcTGGCTCAGAGTGTGATCGAACTGAACAACCAGATTCAAATGAAGGACAAAGAGATCCAGAGCAATCAGGCcaggaTGTTGGAGTACCAGCAGCAGATGGCCAGTCTGGAGGTAGACTGTCGGGAGCTGAGGAACTTCCTGCAGGACCTGGAGAGAGCcaatcagacgctgaaggacgaGTACGACGCGCTGCAGATCACCTTCTCAGCGCTGGAGGAGAAGCTGCGTAAGACCACCGAGGACAACCAGGAGCTGGTGTCCCGCTGGATGGCCGAGAAGGCTCAGGAGGCCAACAAGCTCAACGCTGAGAACGAGAAGGacagcagACGCAGACAGGCCAAGCTGCAGAAGGAACTGGCCGACGCAGCCAAAGAGCCTCTACCTATCGACCCagacGATGACATCGAGGTTTTGGCGGAGGACGGAGGGAAAGGAGGTGGCGGTGGTGGTGAGACGTCTCCCAACAGACCGCTGAGCAGAACTCCCAGtaagAAGAACTCTCAGCCTCCTCCGGCCGGTCTGCTGGACTCCATCTCCAACATATTTGGGCGTCGCCCTGGAAACGCTTTCAACACGTCTCCTGAAAACACAGAAGCTCCTTCAGGAGTGTGTGCCGAGGTTCGAGTCCCGTCCACGGCGCTGCACGTCTTCgATGCCCATGACGGCGAGGTGAACGCCGTGCGGTTCAGCCCCGGCTCTCGTCTCCTAGCAACAGGAGGGATGGACCGGAGGGTTAAGCTGTGGGAGGTCGTGGCCGGTCGCTGTGAGCCGAAAGGAGCTCTGACCGGCAGCAACGCTGGAATCACCAGCATTGAGTTTGACAGCGCTGGCTCGTACCTGCTCGCGGCCTCCAATGACTTCGCCAGTCGGATCTGGACCGTAGACGACTACAGGCTGAGGcatACGTTGACAGGTCACAGTGGGAAGGTGCTGTCCGCTCGCTTCCTATTGGACAACGCTCGAATCGTCTCCGGGAGCTACGACCGAACACTCAAACTCTGGGACCTGCGCAGCAAAGTCTGTATGAAGACAGTGTTTGCCGGCTCCAGCTGTAATGACATTGTGTGCACGGAGCAGTGTGTGATGAGTGGACACTTTGATAAGAAAGTTCGGTTCTGGGACATCAGggctgAGACCATAGTCCAGGAGCTGGAGCTGCAGGGCAGGGTGACCTCTCTGGACCTGAACCACGACCGGACCGAACTGCTCAGCTGCTCCAGAGACGACCTGCTCAAGATCATAGACCTGAGAACCAACGCTGTCAGACACACCTTCAGtgCTCCAGGCTTTAAGTGTGGCGCTGACTGGACCAGAGTAACTTTCAGtcctGACGGTAGCTATGTGGCCGGAGGATCAGCTGACGGAGCTCTCTACATCTGGAACGTTCTGACGGGGAAAGTGGAACGAACTCTGGACCGGAACCACAActCGGCCATCAACTCGGTGTCCTGGTCTCCTTCAGGAGCCTACGTCGCCAGTGTGGAGAAGGGCAGCAAGGCCGTCCTCTGGTCGGACATGTGATTGGCCGAGACCCAAGGAGATGGGCGGAGACAGAGACGGGTGGAGACAGAAGGAGACAGCCAGGCTGAGACGGGTGGAGACAGCCAGGCTGAGACGGGTGGAGACAGCCAGGCTGAGACGGGTGGAGACAGCCAGGCTGAGATGGGGGGAGACAGAGcaggatgtttgtgtgttggcTGAGACGGGTGGAGACAGAACGGAGACGGGTGGAGACAGAGCAGGACGTTGGTGTGTTTTGTGGACGATGAGACATTTGATGAActcggacagacagacagagacgatGCTGTCGCTCAGCTTCAATCTGACCTTTCTCTTTTATTTCAGAGAGGAATCAAACACACCCAGAGTTAATAATAAAGGCTTTATTAACCCTAA

Function

symbol description
atg16l1 Predicted to be involved in autophagosome assembly and negative stranded viral RNA replication. Predicted to be active in autophagosome membrane. Is expressed in intestine. Human ortholog(s) of this gene implicated in inflammatory bowel disease 10. Orthologous to human ATG16L1 (autophagy related 16 like 1).

NR:

description
autophagy-related protein 16-1 isoform X3

GO: NA

KEGG:

id description
K17890 ATG16L1; autophagy-related protein 16-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039776975.1 True 2426 mRNA 0.57 21 8849490 8880046
XM_039776983.1 False 2381 mRNA 0.57 20 8849490 8880046

Neighbor

gene id symbol gene type direction distance location
LOC120543840 LOC100693035,LOC101486393,LOC103152962,LOC103475253,LOC106951493 coding downstream 8114 8828413 ~ 8841376 (-)
LOC120543940 NA coding downstream 165006 8682663 ~ 8684484 (-)
LOC120543728 NA coding downstream 211403 8622482 ~ 8638087 (-)
LOC120543874 LOC101482597,LOC103360230,LOC107102854 coding downstream 457213 8369769 ~ 8392277 (-)
LOC120543856 NA coding downstream 751026 8079224 ~ 8098464 (-)
LOC120543996 NA coding upstream 41390 8921436 ~ 8923366 (-)
LOC120551100 NA coding upstream 315941 9195987 ~ 9201417 (-)
LOC120544027 ap2m1,LOC108440593,LOC106580654,LOC106612407 coding upstream 608276 9488322 ~ 9502894 (-)
LOC120551135 LOC101071594,LOC102800178,LOC103356830 coding upstream 644161 9524207 ~ 9531095 (-)
LOC120543835 NA coding upstream 650975 9531021 ~ 9543141 (-)
G15826 NA non-coding downstream 47512 8801446 ~ 8801978 (-)
G15819 NA non-coding downstream 70948 8778030 ~ 8778542 (-)
G15812 NA non-coding downstream 98542 8750411 ~ 8750948 (-)
G15809 NA non-coding downstream 105144 8735489 ~ 8744346 (-)
G15807 NA non-coding downstream 152344 8696745 ~ 8697146 (-)
G15832 NA non-coding upstream 4810 8884856 ~ 8885515 (-)
LOC120544086 NA non-coding upstream 5880 8885926 ~ 8886911 (-)
LOC120544051 NA non-coding upstream 14738 8894784 ~ 8896382 (-)
G15836 NA non-coding upstream 37978 8918024 ~ 8920817 (-)
G15851 NA non-coding upstream 89236 8969282 ~ 8970613 (-)
LOC120544569 dgkd,LOC102780004 other downstream 107367 8692074 ~ 8742123 (-)
G15771 NA other downstream 192527 8601917 ~ 8656963 (-)
G15757 NA other downstream 379730 8468357 ~ 8469760 (-)
LOC120551075 LOC103475274,LOC105922519 other downstream 694187 8137301 ~ 8155303 (-)
trnaa-cgc NA other downstream 913163 7936256 ~ 7936327 (-)
spint2 NA other upstream 392 8880438 ~ 8914977 (-)
G15820 NA other upstream 91868 8971914 ~ 9046433 (-)
LOC120543625 NA other upstream 250938 9130984 ~ 9210517 (-)
G15903 NA other upstream 357921 9237967 ~ 9238784 (-)
eif2a eif2a other upstream 468163 9348209 ~ 9433655 (-)

Expression


Co-expression Network