rnf168


Basic Information

Item Value
gene id rnf168
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8547618 ~ 8566587 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777099.1
GTGTTAACAGTTCATTCACGCGGGTGTTCAGTAGCAGTAGTCTCCGGTGAATCTCCGGTAAAGTTTACGGTTAGCTGTTAGCAGGAATGTGCTAACTGTTAGCCATACACAGTCAGTGCAGTTTACACTGTTAGCTAACGGGTAGCTAACGGTTAGCTAGGCCTGTCGCGGTTTGACGTTAGCCAGGGAGCTAACTTGACTTGTTGTTAGCTAACTTAACTTTAGCATCAACGTCTGTTTACCCCAGTACAGGCTGATCAGCTGACTCTCCGTGCccaccacagaagaagaagaggaagaggatggTGTCAGacagaggaggggggaggaagagagggggggcgGCTGAGCTGTCCCGGGACGACTGTCTCTGTCCCGTCTGTCTGGAGATCTTCATGGAGCCGGTTACTCTGCCCTGCACACACTCCTTCTgcaagGTCTGTTTCCTGGAGTCCGTGGACAAGGCCACCCTGTGCTGTCCCCTGTGCAGGAAGAGGGTCTCTACGTGGGCTCGTCTCCACAGCCGGACCAACACGCTGGTGGACCAGAACCTCTGGACCAGGATCCAGACCGCCTTCCCTCTGCAGTGTCAGCGGAGGCTCAACGGCCAGGACGCAGAGCCAGACGGACCtggagtatcAGTGTGTTTCCCCAGAGTGAGTGAGCCTGGAGAGCTGAAGCAGGAATACGAGGAACAGGTCACTAAACTGACGGAGGAGAAGAGAGCTCTAGACGAGGAGGAGGCCAGGGCCAGCCAGGAGTTGATCCAGAAGCTTCTGGCTGAGGAGCAGAAGATGGTCCaggaggagatgaagaggagagaggaggacgAGAGGCTGGCTCGCCTGCTCAGCTCTCAGCTGAACTCCGGTCCGGTCTCTCAGGAGAACTCTGGTCCTGTTAACGCCACTCCAgccaagaagaggaagaaggaggtcAGCGGACAGATGGACCGgtTCTTGTGTCCTCTTCCATCTAACAGCATGTTTACAGCCAACAAGGTGGATCAGCCCCTCCCCAAACTGGATTACTACGGCGCTGTGACAGAGCCCCCCTCTCACAGACcagcccctcctcctctctctgtggaGGAGGACCTTCAGCTGCCTGCAGCAGGACGGCCGGGGTCCAAGAGGAAGAGCTCGGAGCTGGAGGCGGTCtgtccctcttcctcctcctcggccCTGCAGGAGGTGTCAGAGGGGGGGCTGTCAGACTGGGGGGTCAGACTGGGAGGTGCAGCTCCAGAGCAGACGGCTGCAGGAGGAGCAGGACCGGCAGCTGGCCCTGCAGCTCCAGAAACAGCTGGACCAGGAGGAGAAACGGAGGGCTACGAACCGAAGCAAAGGCTCCTCAGACCAGTACCTGCTCCGCCCAAACCTCTGCAGACAGACCTCCTCCAGTGCCTCAGCCACCACCCGTACAGCCTCCTCCACCCCTTCATCTGCAAAGACTACAACCTCTGCAAAGACTACAACATCTGCAAAGACTACAAACTCTGCAAAGACTACAACCTATGTAAAGACTACAGCGTCCAGcagccccagcagcagcagcagaggcagTAAACAGACGACTCTGACGGAGATGTTCTCCAGCAGCTGAACTCTGACAGACCTCGTTAAAGCTGCTTTCATTTCCTTTTAGTTCCCCTGGAGACGCTACATGGCCAGCTGATGGAGCagcctggtcctggtcctggtccagAGCCCCTCGGGGGTCAGACCGGCCCACATGTCTGTGTGGACCAGGATTCAGACAGTGCTCCTACTGATCTTTGAGGACACGTTGGGTCTCACCAGGAATCTGGTTTAGTTTCAGGGTCCCCCCGTCTGTaaacttgttttaaataaagttttgggGCCGTCAGACTTTACGGAGAATCTTAATTTTCGGGACTTCTTCAGGGGACCCAAACTAATCACTTTGTTAATCAAAAGTATTTCTgaattcattttcaaaatatctgatttttttttatgaaaataaaccctttttttctaaata

Function

NR:

description
E3 ubiquitin-protein ligase rnf168-like

GO: NA

KEGG:

id description
K20779 RNF168; E3 ubiquitin-protein ligase RNF168

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777099.1 True 2007 mRNA 0.55 8 8547618 8566587

Neighbor

gene id symbol gene type direction distance location
LOC120543718 NA coding upstream 77858 8429225 ~ 8469760 (+)
nyap2a LOC103360223 coding upstream 125282 8399400 ~ 8422336 (+)
LOC120551081 NA coding upstream 240408 8244631 ~ 8307210 (+)
LOC120543907 NA coding upstream 421949 8123625 ~ 8125669 (+)
LOC120551067 NA coding upstream 428972 8115385 ~ 8118646 (+)
mindy4b NA coding downstream 692490 9259077 ~ 9275432 (+)
LOC120551113 NA coding downstream 716877 9283464 ~ 9301261 (+)
LOC120543803 NA coding downstream 742612 9309199 ~ 9315322 (+)
LOC120543792 NA coding downstream 742620 9309207 ~ 9329512 (+)
LOC120543784 NA coding downstream 764980 9331567 ~ 9339168 (+)
LOC120544074 NA non-coding upstream 12877 8531244 ~ 8534741 (+)
G15487 NA non-coding upstream 43464 8503817 ~ 8504154 (+)
LOC120544094 NA non-coding upstream 64324 8482230 ~ 8483294 (+)
G15471 NA non-coding upstream 69200 8478169 ~ 8478418 (+)
G15461 NA non-coding upstream 110880 8435932 ~ 8436738 (+)
G15497 NA non-coding downstream 13284 8579871 ~ 8602270 (+)
G15498 NA non-coding downstream 19796 8586383 ~ 8596399 (+)
G15499 NA non-coding downstream 20690 8587277 ~ 8638423 (+)
G15507 NA non-coding downstream 123425 8690012 ~ 8700884 (+)
G15513 NA non-coding downstream 185031 8751618 ~ 8911859 (+)
G15415 NA other upstream 375127 8170696 ~ 8172491 (+)
LOC120543711 LOC102298536 other upstream 655145 7858053 ~ 7892473 (+)
rffl rffl other upstream 694189 7806809 ~ 7853429 (+)
LOC120543808 NA other upstream 719531 7826610 ~ 7828087 (+)
G15234 NA other upstream 1055561 7491365 ~ 7492057 (+)
LOC120544007 LOC106595375,LOC106565963,LOC106611916,LOC106588692,LOC106572435,LOC106612550,LOC106583987,LOC103477372 other downstream 229483 8796070 ~ 8808975 (+)
G15525 NA other downstream 282914 8849501 ~ 8850871 (+)
LOC120543609 LOC108250351,LOC108250349 other downstream 340143 8906730 ~ 9098564 (+)
G15540 NA other downstream 360005 8926592 ~ 8930270 (+)
G15552 NA other downstream 427594 8994181 ~ 9091968 (+)

Expression


Co-expression Network