LOC120543840 (LOC100693035,LOC101486393,LOC103152962,LOC103475253,LOC106951493)


Basic Information

Item Value
gene id LOC120543840
gene name LOC100693035,LOC101486393,LOC103152962,LOC103475253,LOC106951493
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8828413 ~ 8841376 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777139.1
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattataaaTACAGCTCTGATCAGCTTTCAGAAATCTTCTGCTGGACACGTCGCTGCCCTCAGATCATCAACGTCATCGTCAACATGAGTCCCAGAAATGTCGTCTTTAAGAAAGTTTCCCGCGACAAGTCGGTGGCGGTCTACATGGCAAACAGAGACTTCGTGGATCACTGCGACTTCGTGGATCCGGTCGACGGAGTTATTGTGATCGACCCACTGCAGCTCAAAGGAAAGAAAGTGTACGTGATGCTGTCGTGTGCGTTTCGGTACGGCCGTCCTGGCGAGGATGTGATGGGCGTGGCGTTCCACAGGGATCTGTTCCTGGTCACCCGGCAGGTTTACCCCGAGCTGCAGGACAAAGAGAAGCTGACGCACACAAAGATCCAACACAAGCTGCTGCGAAAGCTCGGAGACAACGCCTTCCCCTTCTTCTTCGAGtttccAGACAACCTGCCGTGTTCTGTCGCTCTGCAGCCCGGACCCTCTGACGTGGGGAAGAAATGTGCGGTGGAGTTCGAGGTGAAAGCCTTCTGTGGAGAGAACCAGGATGACAAGATCGACAAACAGAGTTCGGTGAGTCTCAGCATCCGTAAGATCCAGTACAGCCCAGAGAACAGCCAGCTGGTTCCTGCTGCAGAAACTACCTTCGAGTTCCTGATGTCGGAGAAACCACTGACCGTCAAAATGAGCATGCCCAAagagacgTTCTACCACGGCGAGCCTGTCAGAGTGAATGTAGAAATCACCAACTCGTCCAGCAGGAACATCAGAGACATCAGTGTTTCAGttGAACAGGTGACCAACATTGTTCTTTACTCCAACGATAAATATGTCAAATCAGTGGCCAAAGAAGAGACAAATGACTGTGTCCCCTCTGGGACGAGTCTAAAGAAGGAGTACGTTCTCTATCCTCTGCTGGCTCTCAACAAGGACCGGAGGGGACTCGCTCTGGACGGACGACTCAAACATGAAGACACCAACCTGGCTTCATCCAGCATagTGAAACAGGAGGTGCTGAAGGAGGTCCAGGGCATTCTTGTTTCCTATAAAGTGATGCTGAGGATGATCGCTGCTGGGACGCTTGCATCCAGcgAGGTGTCTCTGGAGCTTCCATTCAGACTGATGAACCCTAAACCTGACCCAGCCAAAGACAGtgagcTGGGTGACATGGTCTTTGAGGAGTTTAAACGAGTCTACCTGAAGGGCGTCGTCTACGGAGACGATGAAGAGTCTCCCACTGAGGCATAAACTACAAAGATGGCCGCCACAgaagactgtctgtctgtctgtttgcctgtctgtctctctgtctttctgttagCAGGACATCATTAACACATTAATGTAGATTTAAGTTGATTATTCATGTTAATAATGTGACTGTAGATGAATGTTAAAGATTAAATAAGTAGTGAAACGTGTTGTTGAAGTATGTTCTTatacttttatgtttttactgCATCTGTGTACTTCCTGTCCCAGAAACTGTGAAATAAAAGTTAagaaacattaaa

Function

NR:

description
PREDICTED: S-arrestin

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777139.1 True 1543 mRNA 0.49 16 8828413 8841376

Neighbor

gene id symbol gene type direction distance location
LOC120543940 NA coding downstream 143929 8682663 ~ 8684484 (-)
LOC120543728 NA coding downstream 190326 8622482 ~ 8638087 (-)
LOC120543874 LOC101482597,LOC103360230,LOC107102854 coding downstream 436136 8369769 ~ 8392277 (-)
LOC120543856 NA coding downstream 729949 8079224 ~ 8098464 (-)
LOC120543635 NA coding downstream 765072 8022628 ~ 8063341 (-)
atg16l1 atg16l1 coding upstream 8114 8849490 ~ 8880046 (-)
LOC120554466 NA coding upstream 12936 8854312 ~ 8854592 (-)
LOC120554461 NA coding upstream 18985 8860361 ~ 8860640 (-)
LOC120554459 NA coding upstream 32965 8874341 ~ 8874620 (-)
LOC120543996 NA coding upstream 80060 8921436 ~ 8923366 (-)
G15826 NA non-coding downstream 26435 8801446 ~ 8801978 (-)
G15819 NA non-coding downstream 49871 8778030 ~ 8778542 (-)
G15812 NA non-coding downstream 77465 8750411 ~ 8750948 (-)
G15809 NA non-coding downstream 84067 8735489 ~ 8744346 (-)
G15807 NA non-coding downstream 131267 8696745 ~ 8697146 (-)
G15832 NA non-coding upstream 43480 8884856 ~ 8885515 (-)
LOC120544086 NA non-coding upstream 44550 8885926 ~ 8886911 (-)
LOC120544051 NA non-coding upstream 53408 8894784 ~ 8896382 (-)
G15836 NA non-coding upstream 76648 8918024 ~ 8920817 (-)
G15851 NA non-coding upstream 127906 8969282 ~ 8970613 (-)
LOC120544569 dgkd,LOC102780004 other downstream 86290 8692074 ~ 8742123 (-)
G15771 NA other downstream 171450 8601917 ~ 8656963 (-)
G15757 NA other downstream 358653 8468357 ~ 8469760 (-)
LOC120551075 LOC103475274,LOC105922519 other downstream 673110 8137301 ~ 8155303 (-)
trnaa-cgc NA other downstream 892086 7936256 ~ 7936327 (-)
spint2 NA other upstream 39062 8880438 ~ 8914977 (-)
G15820 NA other upstream 130538 8971914 ~ 9046433 (-)
LOC120543625 NA other upstream 289608 9130984 ~ 9210517 (-)
G15903 NA other upstream 396591 9237967 ~ 9238784 (-)
eif2a eif2a other upstream 506833 9348209 ~ 9433655 (-)

Expression


Co-expression Network