LOC120543874 (LOC101482597,LOC103360230,LOC107102854)


Basic Information

Item Value
gene id LOC120543874
gene name LOC101482597,LOC103360230,LOC107102854
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8369769 ~ 8392277 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777235.1
ATGTCGTCCAGCCCGCAGGAACAGAACCGGGAGCAGAAAGAGGAGCAGAAAGAGGAACAGAAAGAGGAGcataaagaggaacagaaaGGGGATTTGAAGGAAGAGGAGGTGAAGAAAGACGTGAAGCCGGAGGACAAACAGAATCAAAATGAGGAGAGGAAAACAGAGAAGTGGGAGGAAAACAAGAAAGAAGAGCCGAAGGAATCCTGGAAGGATTGTATCTACAACCCAAGGACCGGAGAGTTTATGGGCCGGACTGCCAGCAGCTGGGGTCTGATCCTCCTCTTCTACCTCGTCTTCTATGGGTTTTTGGCGGGAATGTTTTGTCTCACCATGTGGGTGATGTTACAGACTCTGGACGACAATGTCCCGCGCTACCAGGACCGGGTGGCCAATCCAGGTTTGGTGATTCGTCCGCACGCCGCTGAAATCTCCTTCAACCGCAGTGACCCGACAAACTACAACCAGTACGTCCAAAACCTGCACGACCTCCTGCAGCGTTACAACGACAGCATTCAGGAGCGTAACGACTTGTGTATGGTGGGTGAATACACTGAACAGGACAATGAGCCAATCAAGAAGGTTTGTCAGTTTAAACGCAGTATGCTGCGTCAGTGCTCCGGTCTGCACGACTCGAGCTTTGGATTCGCCGAGGGGAAACCGTGCATCATCATCAAGATGAACCGGGTCATCGGACTGAAACCACAAGGAGACCCCTACATCAACTGTACTGCCAAGAGAGCCAGTCCGTTACAGATGCAGTACTACCCGTCAGAAGCTCGTCTGGATAAAATGTTTTTCCCGTATTACGGAAAGAAAGCTCATgCTGACTACGTGCAGCCCCTGGTTGCAGTGCAGTTGTTGCTCTCCAGAGAAGACCTGAACGTGGAGCAGACGGTGGAGTGTAAACTCGAGGGAACCAACCTGCGTAACGACGACGACCGAGACAAGTTTATGGGTCGCGTTGTTTTCCGGGTCAAAGTGGCGGAGTAACCACATCTGCCAGTTGTCATGGATACCACAAACTGTGTTGAAAGTGGAAATAAATGTCCGGTTCAGGACACTCTGTATTTCAGACCTGATCTGATCCTGGATGTCTGGATGTGGTCTTGCTGAGTCTGGTTTCAGCCGTTCGGACGGACGGATCAGGTCAGGTCTGTGTGAAGCATGTGAGCCAGGTGCACACCCGcgtgttgtttttaaatttaaatgtttaatagtgATGTACAAGGATCCCAGCAGTCTGTAATGGAGCAGCACAAACACACTTCACTGTAATGAGATTACTCTTCTTCCATCCTGAAACAAGAGAAAGACAAAATGCCTTCACAGTTTTTATAATTCTGCATTGAGGATGACATTTCtaactttttttaacaataacatTTTCAAGTTCAAAAAGAGAAAACTGATTCTCTGATTGTTCAACATGTAAACGTTTCAGCAGTTTGCAGGATTTGTATTTAAGTAAACATTGACACAATCAGTTCAATGTAGCAGTAGGATGGAAAggcagtaatctgattactgacggccagtataataataataatactatttcaGTTCATGCAGACCACTGCCAGAAAGATTTGAGTAACAAACTTATCAAAGACAGATTCATAACTGCAGAAAGCTACAAATGTTCTACTTGTAGTTTTCCTGTTTAATGTTTGAGTTGTCTCAGTATAACACTAACTGGAGCACAGACAATAATCTTGttgaattattaattatatatacaaTTATAATAAATACTTTTGATAAAACAGGTCCTCTAGAGGATGAACATTGCACTGCGATATAGGACGCTGCCTCGGCGCTCCGCCTGCTGGGACTTTCACCCCTGTcttttaaaatatactttatGAATATATTGAGGTCTCCCAATGTGTTTACAACCTACTGTTGCacagatgtttttaaatgttttgagtgtttttAAAGACTACTGTTGTGTGATTATTAATGAGTTTATCAGCACAGATCCAATCAGCTTCATGTGTGTTAAGATCGTTAAGTTATTTCTATCCTCGTCTGAAACAGATTGATGTATAGTTTCATTATTTATGTTTCTGTCGACTGAAGGAACGACAGGAAACAAGACTATAATGATCTACTCTgctgcaaataaaacacaaagactCTGACATGTCAATCATTTAAAAA

Function

NR:

description
sodium/potassium-transporting ATPase subunit beta-3

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0005890 sodium cellular_component

KEGG:

id description
K01540 ATP1B, CD298; sodium/potassium-transporting ATPase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777235.1 True 2166 mRNA 0.44 7 8369769 8392277

Neighbor

gene id symbol gene type direction distance location
LOC120543856 NA coding downstream 271305 8079224 ~ 8098464 (-)
LOC120543635 NA coding downstream 306428 8022628 ~ 8063341 (-)
LOC120551059 NA coding downstream 383342 7983094 ~ 7986427 (-)
LOC120551046 LOC106510929 coding downstream 654732 7712652 ~ 7715037 (-)
trnag-ucc NA coding downstream 859698 7510000 ~ 7510071 (-)
LOC120543728 NA coding upstream 230205 8622482 ~ 8638087 (-)
LOC120543940 NA coding upstream 290386 8682663 ~ 8684484 (-)
LOC120543840 LOC100693035,LOC101486393,LOC103152962,LOC103475253,LOC106951493 coding upstream 436136 8828413 ~ 8841376 (-)
atg16l1 atg16l1 coding upstream 457213 8849490 ~ 8880046 (-)
LOC120554466 NA coding upstream 462035 8854312 ~ 8854592 (-)
G15446 NA non-coding downstream 30389 8339161 ~ 8339380 (-)
G15439 NA non-coding downstream 43986 8324821 ~ 8325783 (-)
G15430 NA non-coding downstream 109083 8260151 ~ 8260686 (-)
G15428 NA non-coding downstream 114185 8254873 ~ 8255584 (-)
G15403 NA non-coding downstream 244060 8119515 ~ 8125709 (-)
LOC120544083 NA non-coding upstream 90889 8483166 ~ 8484369 (-)
G15768 NA non-coding upstream 111655 8503932 ~ 8504154 (-)
G15783 NA non-coding upstream 159314 8551591 ~ 8600313 (-)
G15793 NA non-coding upstream 188344 8580621 ~ 8582560 (-)
LOC120544089 NA non-coding upstream 279740 8672017 ~ 8672342 (-)
LOC120551075 LOC103475274,LOC105922519 other downstream 214466 8137301 ~ 8155303 (-)
trnaa-cgc NA other downstream 433442 7936256 ~ 7936327 (-)
lrch3 lrch3 other downstream 1025876 7309914 ~ 7343893 (-)
LOC120544114 NA other downstream 1158403 7207735 ~ 7211366 (-)
LOC120543599 LOC102193948,LOC103360213,LOC102310147,LOC107834023,LOC106944350,LOC103473932 other downstream 1170230 7142729 ~ 7199539 (-)
G15757 NA other upstream 76080 8468357 ~ 8469760 (-)
G15771 NA other upstream 209640 8601917 ~ 8656963 (-)
LOC120544569 dgkd,LOC102780004 other upstream 299797 8692074 ~ 8742123 (-)
spint2 NA other upstream 488161 8880438 ~ 8914977 (-)
G15820 NA other upstream 579637 8971914 ~ 9046433 (-)

Expression


Co-expression Network