LOC120543996


Basic Information

Item Value
gene id LOC120543996
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8921436 ~ 8923366 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777467.1
tgtcaacactgtgacaaatccttcacaacatctggacatttaaagattcatcagagagttcacaaTGGAGATAATCaacacagctgtgatcaatgtgggacaGCTTTCACACTACAGAGTGCCCTAAAaagacatcaacgcattcatACTGGAGAAAAGCCTTACAGTTGTGATCAATGTGGTACAACATTTTCTAGGAGCGGTCACCTTAAATTTcaccgacgtgttcacactggagaaaagccttacagctgtgatcagtGTGGTACATCATTTTCTAGGAGTGACagccttaaatctcaccagcgcattcacactggagagaagccgtactggtgtgaacaacgTGGTAAAACTTTTTCTCAGAGCAGAAGCCTTAAAGCTcaccgacgtgttcacactggagagaagccgtacaggtgtgaacaatgtggggaaATGTTTTCTCAGAGTGGTACCCTTAAAACACATAatcgcattcacactggagagaagccgtacaggtGTGAACATTGTGGGGAAATGTTTTCTCATAGTGGTAcccttaaatctcaccagcgcattcacactggagagaagccgtactggtgtgaacaatgtggtaaAACTTTTTCTCAGAGCAGAAGCCTTAAATCTCACcaacgtgttcacactggagagaagccttaccggtgtgaacaatgtgggaaaatgtTTTCTCGGAGTAGTAGCCTTGAAgctcaccagcgcattcacactggagagaagctgtacaggtgtgatcaatgtggggcagcttttgCTCAGAGTGGTAACCTTAAAAGACACCAGgtcattcacactggagagaagccgtactggtgtgaacaatgtggtaaAAAATTTTCTCAGAGTGGTAGCCTTAAAAGACaccaccagcgcattcacactgcctcgtagtgaacatgtttcagagccaagctgttccctcctgcctcctcctcatgccctgatagctgagttgttatattctgatcttctctccacattgaaggctgaccagAAGAAACTTTATCTTCTGAACAGCATGTATGTTATCCTGGCTAACACTATACATTACACTCCCTCCCTTTTGAAGGGATTTTCTGAGTTCAGGGTTCAACTGCTAGTGCTTTTTAACTAATGCTGCAACGAAGAAGTATTTGTTGTTCTTAATTCATCACCTTGTAAATAGAATTTACAAAAATCCCCATCGCTGTTTACTAAGGTGATGTCAAATTGctgaaatattcagtttattgtcaCTTAAGACGACAAAAGCTTTAATCAGAACATGGCTGCAAAAAATTATTTGAACAGTTAATGTGTCTAAACTGCGTCTGTGCCGCCGCCATCTTCGGACAGACAACTGATCTTAAAGACTCGGACTCAGAAAAAGATAGTTGTACTGCTTTTGGAATTTCACGGATGAAAACTGTGTTTTACAATATTATACTATTACGAGAGTGTTGAATTTAATATCACAAAAGGTAACATTAATCCTTCTTTTAAGCTAACAGGAAGTTAAGTGACTGTCCTGATACTGAAttgagctaatgctagcttgtgtcaggttatgtatgttttatttaagTGATTATTAATATCTCAGTAAGATGCTGAAAACAATGTTCATTATGTGTGTCACTGAACAGTTCCTCGCGTCATTCCCCATACTCTTTAcccaaattagttgactttactcGCAAATCGTGTGGAAACACTTTAGTTTTTACACAAGCTGAAACTAAACATGTTGAGTTGTATTAACATGGAACCTTACGTttagtatttatatttattagtaCTGTGTGCTCAAAATCATTAGATAAAACTAGCTATTATGACTT

Function

GO:

id name namespace
GO:0000151 ubiquitin ligase complex cellular_component
GO:1990234 transferase complex cellular_component

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777467.1 True 1847 mRNA 0.40 2 8921436 8923366

Neighbor

gene id symbol gene type direction distance location
atg16l1 atg16l1 coding downstream 41390 8849490 ~ 8880046 (-)
LOC120554459 NA coding downstream 46816 8874341 ~ 8874620 (-)
LOC120554461 NA coding downstream 60796 8860361 ~ 8860640 (-)
LOC120554466 NA coding downstream 66844 8854312 ~ 8854592 (-)
LOC120543840 LOC100693035,LOC101486393,LOC103152962,LOC103475253,LOC106951493 coding downstream 80060 8828413 ~ 8841376 (-)
LOC120551100 NA coding upstream 272621 9195987 ~ 9201417 (-)
LOC120544027 ap2m1,LOC108440593,LOC106580654,LOC106612407 coding upstream 564956 9488322 ~ 9502894 (-)
LOC120551135 LOC101071594,LOC102800178,LOC103356830 coding upstream 600841 9524207 ~ 9531095 (-)
LOC120543835 NA coding upstream 607655 9531021 ~ 9543141 (-)
LOC120554346 NA coding upstream 708557 9631923 ~ 9632028 (-)
G15836 NA non-coding downstream 619 8918024 ~ 8920817 (-)
LOC120544051 NA non-coding downstream 25054 8894784 ~ 8896382 (-)
LOC120544086 NA non-coding downstream 34525 8885926 ~ 8886911 (-)
G15832 NA non-coding downstream 35921 8884856 ~ 8885515 (-)
G15826 NA non-coding downstream 119458 8801446 ~ 8801978 (-)
G15851 NA non-coding upstream 45916 8969282 ~ 8970613 (-)
G15853 NA non-coding upstream 57822 8981188 ~ 9056979 (-)
G15858 NA non-coding upstream 72674 8996040 ~ 9078952 (-)
LOC120544059 NA non-coding upstream 95711 9019077 ~ 9019842 (-)
G15866 NA non-coding upstream 109480 9032846 ~ 9036740 (-)
spint2 NA other downstream 6459 8880438 ~ 8914977 (-)
LOC120544569 dgkd,LOC102780004 other downstream 179313 8692074 ~ 8742123 (-)
G15771 NA other downstream 264473 8601917 ~ 8656963 (-)
G15757 NA other downstream 451676 8468357 ~ 8469760 (-)
LOC120551075 LOC103475274,LOC105922519 other downstream 766133 8137301 ~ 8155303 (-)
G15820 NA other upstream 48548 8971914 ~ 9046433 (-)
LOC120543625 NA other upstream 207618 9130984 ~ 9210517 (-)
G15903 NA other upstream 314601 9237967 ~ 9238784 (-)
eif2a eif2a other upstream 424843 9348209 ~ 9433655 (-)
LOC120551129 NA other upstream 590110 9513476 ~ 9522231 (-)

Expression


Co-expression Network