srpra (srpra)


Basic Information

Item Value
gene id srpra
gene name srpra
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 22044181 ~ 22053600 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777878.1
caaaaacggAAAAGCGCGTCACTTCCCAGTTTTGCATCTGACGTGTCTCAAACAGTTTTGCATTGGTGGTGGATTTTACTCGTTGGGTATTTATTATCTATTGGGCTAATATCTGATACGTGGTGGCAAGATGCTAGATTTCTTCACCATCTTCAGCAAAGGGGGGATAGTGCTGTGGTGTTTTCAGGGAGCCGGGGTCACTGAATCCTTCACCGGGCCTGTCAACGCTTTGATCCGCTCCGTAATCCTTCAGGAGCGAAGTGGGAACAATTCATATACTCACGAGGCCTTGAGTCTGAAATACAAGCTCGACAATGAGTTTGAGTTGATTTTTGTGGTGGGTTTTCAAAAGATCCTGACGCTGACATACGTGGACAAGTTCATAGATGACATTCAGCTTCATTTTAGGGATCGTTATAAGAATGAGCTGGAGCAAAAGGGGGCTTTGAAGCTAATCCAAAACAACTTTGAATTTGATGAtgactttaagatgcttctcagAGAGGCGGAGGAGAGCAGCAAAGCTCGGAACCACGCCACCATGCGGACCTTTAAGGAGTCTGAGAAATCTCAGAAAACTGTGAAGTCAATGATTGAGACCAAGGGTGGGGAAAAAGTTAAGGAACCTGGTggaaagaagaataaaaatacCAAAAAGGAGTCTCCTGCAGCTGAGCCCGTCAAGGTGGATCAAGGCAAGGCCTCGTCCTCTGGGCCGAAGGTAGTCGAGAATGGTAACCAAGGCTTGACTCCTGAGGAGATCATTCAGAAGAAGCGAGAGGAATTTATTCTCAAGCGCACAATGGTGCCTGCTGCAAAACCCATTCACAGTAAGTCCCCAAAGCCTCAGAAGCCTAAGGAGAAACAAATGCGTGTTTGGGACATGGGTGGTAGCAACACCAAGGAGCTGGACTACAGTGGAAGGAATGGAGATGGTTCCCAAAATGGCGATCAGAACCAGGAAGCACACATTGACCTGGGGATGCAGCTAAGCTCCATGAAGGGTGACCTGCTGTCTGTGGACTATGAGTCCAGCGAGGAAGAGGAGATGGAGGttgaagaagaggagaaagtgGTTATCAGTGAAACAAGCAAGACAAGCTCCAAAAAGGGTGGTGGTTTTGGGGGCATGTTTGGGATGCTGAAGGGCCTGGTGGGCTCCAAGAGCCTGACCCGGGACGACATGGAGTCAGTACTTGAGAAGATGAGGGAACACCTCATTGCAAAGAATGTAGCAGCTGACATCTCCTCCCAGCTCTGTGACTCTGTAGCCAAAAAACTGGAAGGCAAAGTCATGGGCACATTCACCActgTGGCCTCAACGGTAAAGCAGGCTCTGCAGGACTCACTGGTGCAGATCCTGCAGCCCAAGCGAAGGGTAGATATTCTGAGAGATGTCATGGAGGCGCAGAGCCAGCGAAGGCCTTTTGTCATTACTTTTTGTGGTGTCAATGGGGTTGGAAAGTCCACCAACCTGGCCAAGATCTCTTTCTGGCTGATCGAGAATGGTTTCACTGTGCTGATCGCAGCCTGTGACACGTTCCGTGCCGGAGCCGTGGAGCAGCTCCGCACTCATCAGCGCCGCCTGAACTCTCTGCATCCCCCCCAGCAGCACGGAGGACGCCCGGTAGTCCAGCTCTATGAGAAGGGCTACGGGAAGGATGCTGCTGGAATTGCCATGGAGGCCATTGCCTATGCACGCAACCAGGCCTTTGACGTGGTGCTGGTGGACACTGCTGGGCGTATGCAGGACAACGCCCCCCTAATGACAGCACTGGCCAAACTTATCGCGGTCAACATGCCTGACCTAGTACTGTTTGTTGGAGAGGCTCTGGTGGGCAATGAGGCAGTTGACCAGCTGGTAAAGTTCAATCAGGCTCTGGCAGACCACTCCATGTCTGACAAGCCTCGCCTCATTGATGGAATTGTTCTCACTAAGTTTGACACCATCGACGACAAGGTTGGTGCTGCCATCTCCATGACTTACATTACAGGTCAGCCCATTGTGTTTGTGGGCACAGGGCAGACCTACAACGACCTGCGCAGCCTCAACGCCCGCGCTGTGGTCAGTGCCCTGATGAAGGCTTAAGTGGCTGCATGTCCTGCTGTTTAATCATCGTCGTAAAGAAGCCAACAATACCCTTCTGCCACGCTGCCGTGAGATGTTCCAGCCCTGCTAACCTGTTTCTCATCCTCCTGCCCGCTCTACTTTGTGTCAAATGAAGAACTCATATCATGCACAGGACTGTATTCTGCCAGTAAAGGACAAGTGTGCACTTTGAAAGACAGAACATTTTGCAACAAAGCCAGAGGGGCGTCCCTTTGAATCAGTTCTAAACTTCCGGGCCTACACTGAAAAAGTACCTCAGACCAGCCATTTTTAAACAGTGGTCACATCCAAATGACATTTTAGCTGACTAAATGGACCTAGGCTTTAAATGTCACCAGTTTAATGGTTAACATAGTAAAgacttacaaaaaaaacaacaacaaccctaCCTGGCATTTTGTCAGTTTTCCCCTCTTCATGTAAATGAGGTCAGGTCGTGAAGGCTTGCTGGATGTGACATTTCAGCAGCTGCCTGAGGAAAGCTTAGTGACCATTGTGCCTAATAATCCATTTCCTGTCTTCTTAGTTAACACTTTCACTACATGGGTAGTTCTCCATCAAGAGTACCATGGCAGGTCAGGTCAGAAACCGGTTTACAACATACAGTCATAAAGTAGGCATGAATATCAACACTTATGAAGTTAGTAGATGTTGTACTCTCCTAATCTCTCTAATCCAAAAATGGAATAATGACAAACTAGTACACACGTTCTGGATTGATTGTTCTACGAAAGTTATCTCCCAGAGCTTCTTGCCTACCTGACACAGTTAACATATTTTCATTACAAAATGGAGACTTTGATTCCTGAGTTTATAGTTGATGAAAAGTGGAGATATTTTGTAAATTGAATTTTTTTAGTTCTTGCAGGTTGTCTGTAGCTTTTCAGACTACACCGCCTGTGTGGTCTGTGGAAGTTCTGAgcctttttatttatgttttctcCTTTTGATTTACTCTTCATTTATAAAGAGGAAATATAAGTCTTAAAATATCTCTAGCCCCCTTTAATTTGTGGTAGTGCAATATACGCAAATCAAGAGTTAAAACGGACGATTTGAGCTAATTTATGAGAATGTAAAAATTTCTAAATAAAGCTGCTATATGCTATGACAGCCTGTAAAGTGGAA

Function

symbol description
srpra Predicted to enable GTPase activity and signal recognition particle binding activity. Predicted to be involved in protein targeting to ER. Predicted to act upstream of or within SRP-dependent cotranslational protein targeting to membrane. Predicted to be part of signal recognition particle receptor complex. Predicted to be active in endoplasmic reticulum membrane. Is expressed in brain. Orthologous to human SRPRA (SRP receptor subunit alpha).

NR:

description
PREDICTED: signal recognition particle receptor subunit alpha

GO: NA

KEGG:

id description
K13431 SRPR; signal recognition particle receptor subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777878.1 True 3238 mRNA 0.47 15 22044181 22053600

Neighbor

gene id symbol gene type direction distance location
siae NA coding downstream 249237 21787540 ~ 21794944 (-)
mmp13b mmp13 coding downstream 286002 21754393 ~ 21758179 (-)
gucy2f LOC103357218,LOC100708779 coding downstream 312038 21720989 ~ 21732143 (-)
LOC120572601 NA coding downstream 433543 21608044 ~ 21610638 (-)
dhx40 dhx40 coding downstream 436441 21600529 ~ 21607740 (-)
kcnj5 kcnj5 coding upstream 97737 22151337 ~ 22179661 (-)
fli1 fli1,LOC106612965,LOC103145351,LOC106905187 coding upstream 146534 22200134 ~ 22233779 (-)
smtla NA coding upstream 293711 22347311 ~ 22352582 (-)
LOC120551448 NA coding upstream 735444 22789044 ~ 22799012 (-)
barx2 barx2 coding upstream 807351 22860951 ~ 22871590 (-)
G18669 NA non-coding downstream 165417 21819989 ~ 21878764 (-)
G18626 NA non-coding downstream 348459 21632980 ~ 21695722 (-)
G18631 samsn1,LOC102311369,LOC107374247 non-coding downstream 391315 21651703 ~ 21652866 (-)
G18591 NA non-coding downstream 460778 21527455 ~ 21583403 (-)
LOC120572042 NA non-coding downstream 511426 21529997 ~ 21532755 (-)
G18758 NA non-coding upstream 94439 22148039 ~ 22148297 (-)
G18770 NA non-coding upstream 134663 22188263 ~ 22188687 (-)
G18795 NA non-coding upstream 229403 22283003 ~ 22286209 (-)
G18803 NA non-coding upstream 310671 22364271 ~ 22364495 (-)
G18810 NA non-coding upstream 378953 22432553 ~ 22432962 (-)
LOC120551419 LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978 other downstream 37006 21983302 ~ 22007175 (-)
gdpd5b gdpd5,LOC103357216 other downstream 333818 21664076 ~ 21710363 (-)
LOC120572205 NA other downstream 428935 21610814 ~ 21615246 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other downstream 782258 21237188 ~ 21261923 (-)
si:ch1073-340i21.1 NA other downstream 946980 21094177 ~ 21097201 (-)
G18885 gramd1b other upstream 1085613 23139213 ~ 23148515 (-)
G18948 LOC103474743 other upstream 1193003 23246603 ~ 23252420 (-)
LOC120574680 NA other upstream 1399947 23453547 ~ 23461044 (-)
atm atm,LOC102794456 other upstream 1675888 23729488 ~ 23758826 (-)
slc33a1 slc33a1 other upstream 1748915 23802515 ~ 23809452 (-)

Expression


Co-expression Network