phf12b (phf12)


Basic Information

Item Value
gene id phf12b
gene name phf12
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 44968198 ~ 44986626 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777980.1
TTCGCGGTTGCGCCAACTGGCAGAGGATGTTGCTAGTAGCCAGTGTAGATGTCTTTTTCACAACAATAACATCAACCAAATTTGCATCTCCGCATACCTGATTTAAGGATTATACATTCCGAACGCTATTGGAAACGGTGCATTGGACCGCGCCACGACGAATTTCCTTCTGTATTTTTTGGCTAGCTACATCTTCTGTTGACAATGGGAGCGCAGGGTTTTGCAGATTTACAAGGCTCCTTTTTGCAGGAGCAGAAGCAAGAATCATGGCTGGCTAGCTAGGCCGCAGATGGATTTTGTAGCTAACAGCAACAATCTATTgatataaaatactgtatataggcTTGGCGCAGCTCATAAACAGTGGTGCTAAGAAGCCAGTGTCTCACTTGCAAGATTATCGTTgatttttgttgtctttttggaGCCCACAACACAAGCTAGTGAGCTCGCTAGCTTCACAACCTTGACTGGTTAACGTCTTGCCTTCGTAGTTAGCTCCTTTAGCCAGCTAACTATAGCTAGCATCGCTTGGCTAGCCACCCGCTGGTCAAAACATTTgggaaaatatattttctaCGGGAAATACTCTGTGTTGTGTGCTCGGTAGGCATTTGTATTGCAAATTCCTTTTTGCAGCGTCTGCATCTGGATGAATGTGGGACAAAATGGAGACCCCGACGATTGTGTACGATTTGGATACCTCTGGGGGCTTAATGGAGCAAATCCAAACACTGCTGGCGCCCCCGAAGTCCGAGGACGTAGAGAAGAGGAGTCGGAAGTTGGTGAGAGACGTCCGGAGGAGCGGCAGGGCCACCAACCACGACACCTGTGATAGTTGCCGGGAGGGGGGCGACTTGCTGTGCTGTGACCACTGTCCTGCAGCCTTCCACCTCCAATGCTGCAACCCACCTTTAAGTGAAGAAATGCTACCCCCAGGGGAATGGATGTGTCACCGCTGCAATGTTCGAAAGAAGAAGCGAGAGCAGAAGTCAGAACAGACCAACGGTCTACCGGAGAAGTCCTCGTCTAAGCACTCTGTGTCCCCGGCCGTGGAGCTGGAGCTCAATGCCGGCCCACTGCGGCTCGACGGCCTGCCTCCGGGGGCCGGAGCAGCAGGGCCCGGTCTACGAGTGGCTCAGGTACGCCTCTTGGACCGCAGGACCAGCAGCAGGCCAAGCAGCCGGCCCGGAACACCCACCTCCAACACTTCGTCCACCCCAACTCCCTCAGAGGAGCAGAACGacggggaggaggaggcagcagAGCCCGAGGATGAAGTTCAGGGCTCAGAGCTTGAGGGTGCTATGCTTTCCGCTCCGGCTCCACGCCTCCTCAAGAGGCCCTTTCAGCTGCTAATAGCAGCCGCTATGGAGAGAAACCCTACGCAGTTCCAGCTACCTAGTGAGCTTACCTGCACCACTGCACTACcagGCAGCAGCAAacggaggaggaaagaggagctaCTAGGGAAGCCATTCAGGAGGCCTCAGCATGAGCTGGATCCCAATGGTCTGGTCCCTCTACCAGTCAAAGTCTGCTTTTCATGCAACAGGAGTTGCAGGTTGGCTCCACTTATCCAGTGTGACTATTGTCCCCTTCTGTTCCACATGGACTGTCTGGACCCTCCGCTCACAGCTCTACCTGCTGGCAAATGGATGTGTCCAAACCATGTCGAACACTTAGTGCTGAATCAGAGAAGCCTGAGCCTGTCCAGTCGCTGTCAGCTCTTCGACCATTTCCAGGACAGGATGTCCCAGCACGCCGTCAAGTTGGACTTCCTACGTAGAGTCCATCGGCAGAATACACCCAACCGGCGCAAAACCCACCAGCACAATAGGAAGACCATCAAGGTGCCAGATGCCATCAAGTCCCAGTACCAGAATCCTCCCCCCATGCTGCTTCCTGCAGAGGTGCGCCAGTTGGAGCTGGTTTGTAGCGGCGTGCCTGACCGTCAGCCCTCAAAGCACCTCACCACAGAGACTGAGCAGCAGGAGTGGCTTCAGGATGTCATCGCCCTCCAGTGCAGCATCATGCGACACCTTTCCATCAAGCAGAAGGCTTCATCCACAGCATCCACCCTGTCATCAGTAACATCGTCAGCAGAGTGGGTTTCTGAGCAGAAAGCCAGTCCTAAAGCATGTGTCATATCAGAGAACGTGAAAACTCAGGCTTCTTTAGGAAGGACTTCTTCCCCTGACCCCTGCTCTAAACCCTGCAGTACACCGGATGACCCCCAGGGGCCCCTTCTTTCAAGGGGCACCCTTGCCGTGCTGGGTGTTTGTAAGTGCAGCACAACACCATGTCAGAACTGTAAGAAACCCAACGGCCCTCTGGCAGCAGAGTGTCAGCCTCTCAAAGCCAACGGACCTGTAGACTGTAACAATGGCTCGGACTCCTGCAGGCAGGCTGAGCTGCAGCACAGACTGAAGCCCAGCACAACACCCCCAGACGCTGCTCCTTCCTCTGGGCTGGTGAACCACataggagcagaaactgttaaAAAGGAACCTGAGAGCACTAAAGAGGCCTGTGCTCAGAAAATCTGCCCCACTGCCCTGACGATATGGCCCCACAGCAGCCAGCAGAACCACAGGAGCCACACAGAGCTCCAGGAGGAGTGTATGAGCAGCGATGAAAAACCCAGCTACTCCATCACCAGCAGTGCTCGCTCAGACACACCATCTAAAGGCAACCAGGAGCACGATCCAACCAAGCTGGGGTCATCATTACCCACTCCAGACATAAAGGCTGGTCCTGGACTGATGGGCTCACTGCTGCCAAGCACTCTCTCCTCCATCGCTAACCTGGCCAGCTGCATGAAAGATGGAAAGGATGAGGAAAGAGGGATTGAGCTGGACAAACTGGATGCAGAGATGATCAAGCTCCTGGCCTGGCAGAGGATCCAGCAGCTCTTCCCCCCAAAAGTGCCCAGCCCACCGCCTCCCCCAGCCACCAGTGTTGCCCCCAAAACCCCATCACCCTGCCATGACAGTCAGAAGAAGGTGCAGGCCCGAGCTGTCTTCTACCCTCTGACAGGAAAAGGAGGAGCTGTCAGCATGTGCTATAGGACGTTGTACATAGGATCGGGTGCTGACATGGACGTGTGCCTTACAAACTATGGTCATTGCAACTACATATCGGGGAAACACGCCTGTATTTTCTATGACGAGAATACCAAGCATTATGAGCTGCTAAACTACAGCGAGCATGGCACCACCGTGGACAACGTTCTCTACTCGTGTGACTTCTCAGAGAAGGCCTCGCCATCTCCACCCAGCGGGCTGGTTGCCAAAGTCCAAGGCATCATACGTCGCAGTAAGAAGCGTGAGGATGACGAGGGTCCCAGCTCTGTGGTGGGTTTGTTACCGGCTGGTGGAGTGATGAGCAGCCAGCCTCAGGGTGGCTCGGAGCTGTCGTGCAGCTGTAAGGCAAGCAGCTCCAGCCTGATAGGAGGCAGCGGGGCGGGCTGGGAGGGCACCGCCCTGCTCCACCACGGCAGCTACATCAAACTGGGTTGCCTCCAGTTTGTCTTCAGCATCACAGAATTTGCCAGTAAGCAGCCCAAAGAGGAGCCGACCACAACGCCTGCCGCCAGTTGcgccaccagcagcagcagcagtagtgcaGCCAGCACCACTACCAGCACcgcccccaccaccaccctcacaccaccaccacccaacACTGCCACAGTGAGCAGCCCCTCCAGCCAGGATGAGACTGACACGGAGACTGTCCCTGCCCACCAAGTGCCCGTACTGCGCTCCAACTCTATTCCATAACCTGCACAGGAAGTCCCGCCCTCCCTCCTTTGTTTTGCACCTTCCAAGTCACAATGAAGGGAAAGCTGCACAGCTGGTTGGTCAACAgggaaaagtttattttttattttttaatggttTATATCTTTGCATGAACTTGAAGTATTTTTGACAATCTCTTCTGTTTTTGAATGACTGACCAGTAACCCTCTGTTCACTTCAGACCGGACGTTGAGCGAAAATTATTTACCTATGCTCAATTTTTCTTTTGCCAGTATATTGGTCATGTATggtgtaacattttttttttgtcagcccATTTAGCACAaaccttttattttgtagtattgAATTCCATACATTCTAATTTCTTTTGCTGCTTTTGCACCATAGGTAGCTATATATGTATGAAAACATACATGCTTATACactataatatgtatatataatgtaaatatatataattcagTGCTTCTCAATTGGAGAAACATTGGATTTCATGTAGATTTACCATTTTTTGGTTTTTAACTGTACAGTTCATGGAATTTGTGATACTGTGTAGAGTACCAGACGTTTTGTGATAAAACTTGTTCTTAGTCTGTACTTTCCACTGTAATCCATCTGTAAATACTGTATTGTTTTAGCACTCATTTTAACATCTTGTGCTGCTCTGTATATAAGCACTCTTTGTCTGTACCTGCTTGTCTGTTCAAACCTGTAAATACAGAAAGATTTTCTAAGAACAAACTCAA

Function

symbol description
phf12 Enables phosphatidylinositol binding activity and transcription corepressor activity. Involved in negative regulation of transcription, DNA-templated. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in nucleoplasm. Part of Sin3 complex and transcription repressor complex.

NR:

description
PREDICTED: PHD finger protein 12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777980.1 True 4516 mRNA 0.51 15 44968198 44986626

Neighbor

gene id symbol gene type direction distance location
trnah-gug_5 NA coding downstream 41742 44926385 ~ 44926456 (-)
trnah-aug NA coding downstream 42039 44926087 ~ 44926159 (-)
trnah-gug_4 NA coding downstream 42640 44925487 ~ 44925558 (-)
trnar-acg_8 NA coding downstream 42938 44925188 ~ 44925260 (-)
trnar-acg_7 NA coding downstream 45585 44922541 ~ 44922613 (-)
sez6b NA coding upstream 1337 44987963 ~ 45315867 (-)
myo18ab myo18a,LOC101474105 coding upstream 508911 45495537 ~ 45664024 (-)
LOC120549281 NA coding upstream 678754 45665380 ~ 45681164 (-)
LOC120548432 NA coding upstream 708576 45695202 ~ 45767319 (-)
wsb1 wsb1 coding upstream 797974 45784600 ~ 45808422 (-)
G23949 NA non-coding downstream 2228 44965739 ~ 44965970 (-)
LOC120549064 NA non-coding downstream 83860 44880670 ~ 44884338 (-)
LOC120549067 NA non-coding downstream 87689 44866130 ~ 44880509 (-)
G23911 NA non-coding downstream 151822 44812153 ~ 44816376 (-)
G23912 NA non-coding downstream 162159 44805798 ~ 44806039 (-)
G23964 NA non-coding upstream 12351 44998977 ~ 44999217 (-)
G23977 NA non-coding upstream 16808 45003434 ~ 45005501 (-)
G23986 NA non-coding upstream 331981 45318607 ~ 45318882 (-)
G23990 NA non-coding upstream 344106 45330732 ~ 45330998 (-)
G23996 NA non-coding upstream 351880 45338506 ~ 45338872 (-)
mrps23 mrps23 other downstream 143205 44816628 ~ 44824993 (-)
smco4 NA other downstream 1178763 43770066 ~ 43789435 (-)
LOC120553425 NA other downstream 1251457 43700971 ~ 43716741 (-)
LOC120574039 nlk,nlk2 other downstream 1621525 43236682 ~ 43346673 (-)
cntn5 NA other downstream 2801161 42029673 ~ 42167037 (-)
bet1l bet1l other upstream 2148228 47134854 ~ 47142596 (-)
dhx34 dhx34,LOC102778731 other upstream 2308928 47295554 ~ 47325453 (-)
nectin1b nectin1,LOC102782356 other upstream 3170727 48157353 ~ 48398620 (-)

Expression


Co-expression Network