LOC120544471 (hnrnpl)


Basic Information

Item Value
gene id LOC120544471
gene name hnrnpl
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12637166 ~ 12651075 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778254.1
TGCTGCTGTACTGGGCGTGAATACACGAGCCTCGTTTTTCTTGACTTTTCCGTCCATTTCAGTTCTTCGTCACTACCACCATCCTTTTTAACCGGGACAACATGGCTACTGCAGCGAGCCGTTACTACAGCGAAGACGGTAGGGCAACGAAACGACAGAAAACCGACGGAATGGCCACGGGATACGAAGATCCGCACAAGACCCTTCCGTCTGTCGTGGTGCATGTCCGGGGTCTGGTGGACGGTGTTACGGAGGCTGATCTGGTGGAGGCCTTGCAAGAATTTGGAGCAATCAGCTATGTGGTGGTGATGCCCAAGAAGCGCCAGGCACTGGTGGAGTACGAAGACATGAACGGGGCGTCCACAGCCGTAACCTACGCTGCAGACAACCAGGTTTACATCGCCGGCCACCCAGCCTTTATCAACTACTCCACCAGCCAGAAGATCTCGAGGCCGGGAGACTCTGATGACTCTCGAAGCGTTAACAATGTTCTTCTGCTCACCATCATGAACCCGATCTACCCCATCACCTCGGATGTCCTCTACACCATCTGCAACAACTGTGGACCTGTCCAGAGAATCGTCATCTTCAGGAAGAATGGCGTCCAAGCGATGGTTGAGTTTGACTCTGTGCAAAGCGCCCAGCGCGCCAAGGCATCCCTCAACGGCGCAGACATCTACTCTGGTTGCTGCACGCTGAAGATCGAGTACGCCAAGCCCACTCGCCTGAATGTGTTCAAGAATGACCAAGACACCTGGGACTACACAAACCCCAACCTGGGAGGCCCAGATGGTGATGCAGATGGCAATGGGAGCAATTCAGAAGATGTAAATGCCAACCCCAACAAGCGCCAGAGACAGCCTGCTCTGCTGGGCGACCACCCTCCAGACTACGGCGGTGGTTACCATGGCTACGACGAGAGCTACGGCTCCCCGCCCTACGAGGGTCGCCGCATGGGTCCACCGATGAGAGGGCGTGGCGGGAGAAGCTACGGGCCGAGCTACGgacctcctccccctccccccggCGAGTACGGTGGCCACGCCGAGTCGCCGGTCGTCATGTTGTACGGGTTGGAGCCCGTCAAGATGAACGCCGACCGTGTCTTCAATATCTTTTGTCTCTATGGCAACGTAGAGCGGGTGAAGTTCATGAAGAGTAAGCCTGGGGCAGCCATGGTGGAAATGGGAGACTGCTATGCAGTGGATCGCGCCATCACTCACCTCAACAACAACTTTCTCTTTGGACAGAGACTGAATGTGTGCGTTTCCAAGCAGCAGGCCATCGTCCCTGGCCAGTGCTACGACCTGGAGGACGGCTCCACCAGTTTCAAAGACTTCCACGGCTCCAGGAACAACCGCTTCACGTCGCCAGAACAGGCGGCCAAAAACCGCATCCAGCACCCGAGCAACGTGTTGCACTTCTTCAACGCCCAGCCAGACGTCACGCCAGAGATTTTCAATCAGATTTGTGACGAGATCGGTGTCAAGAGCCCCGTCAACGTCAAAATGTTCACAGGAAAGAGCGGCGCGGCTCCCAGCGACCGCAGTGCTTCAGGGCTCCTGGAGTGGGAGTCCATCAACGATGCCATGGAGGCCCTGGCCATGATGAACCACTACCAGATGAAAAATGCAGGTATGGgtgtgaaacgaGGGGAAATCGCTCCCAAGTTCACAAACTCATCAACCGATTCGGACCAGAGCAAACAAAcgatagCTGGTCCTTACCCGTACACCCTCAAACTGTGCTTCTCCACCGTTCAGCACGCCAACTGA
>XM_039778261.1
GGATACGAAGATCCGCACAAGACCCTTCCGTCTGTCGTGGTGCATGTCCGGGGTCTGGTGGACGGTGTTACGGAGGCTGATCTGGTGGAGGCCTTGCAAGAATTTGGAGCAATCAGCTATGTGGTGGTGATGCCCAAGAAGCGCCAGGCACTGGTGGAGTACGAAGACATGAACGGGGCGTCCACAGCCGTAACCTACGCTGCAGACAACCAGGTTTACATCGCCGGCCACCCAGCCTTTATCAACTACTCCACCAGCCAGAAGATCTCGAGGCCGGGAGACTCTGATGACTCTCGAAGCGTTAACAATGTTCTTCTGCTCACCATCATGAACCCGATCTACCCCATCACCTCGGATGTCCTCTACACCATCTGCAACAACTGTGGACCTGTCCAGAGAATCGTCATCTTCAGGAAGAATGGCGTCCAAGCGATGGTTGAGTTTGACTCTGTGCAAAGCGCCCAGCGCGCCAAGGCATCCCTCAACGGCGCAGACATCTACTCTGGTTGCTGCACGCTGAAGATCGAGTACGCCAAGCCCACTCGCCTGAATGTGTTCAAGAATGACCAAGACACCTGGGACTACACAAACCCCAACCTGGGAGGCCCAGATGGTGATGCAGATGGCAATGGGAGCAATTCAGAAGATGTAAATGCCAACCCCAACAAGCGCCAGAGACAGCCTGCTCTGCTGGGCGACCACCCTCCAGACTACGGCGGTGGTTACCATGGCTACGACGAGAGCTACGGCTCCCCGCCCTACGAGGGTCGCCGCATGGGTCCACCGATGAGAGGGCGTGGCGGGAGAAGCTACGGGCCGAGCTACGgacctcctccccctccccccggCGAGTACGGTGGCCACGCCGAGTCGCCGGTCGTCATGTTGTACGGGTTGGAGCCCGTCAAGATGAACGCCGACCGTGTCTTCAATATCTTTTGTCTCTATGGCAACGTAGAGCGGGTGAAGTTCATGAAGAGTAAGCCTGGGGCAGCCATGGTGGAAATGGGAGACTGCTATGCAGTGGATCGCGCCATCACTCACCTCAACAACAACTTTCTCTTTGGACAGAGACTGAATGTGTGCGTTTCCAAGCAGCAGGCCATCGTCCCTGGCCAGTGCTACGACCTGGAGGACGGCTCCACCAGTTTCAAAGACTTCCACGGCTCCAGGAACAACCGCTTCACGTCGCCAGAACAGGCGGCCAAAAACCGCATCCAGCACCCGAGCAACGTGTTGCACTTCTTCAACGCCCAGCCAGACGTCACGCCAGAGATTTTCAATCAGATTTGTGACGAGATCGGTGTCAAGAGCCCCGTCAACGTCAAAATGTTCACAGGAAAGAGCGGCGCGGCTCCCAGCGACCGCAGTGCTTCAGGGCTCCTGGAGTGGGAGTCCATCAACGATGCCATGGAGGCCCTGGCCATGATGAACCACTACCAGATGAAAAATGCAGgtgtgaaacgaGGGGAAATCGCTCCCAAGTTCACAAACTCATCAACCGATTCGGACCAGAGCAAACAAAcgatagCTGGTCCTTACCCGTACACCCTCAAACTGTGCTTCTCCACCGTTCAGCACGCCAACTGAGCGCTCCCTCGTAGCCAGTGAGATGAAGATTGGTCCACCATTCCCGTGTACACATGTATTTAGACCATGACTGCTTGCAACGCCTGGAGATAGATTTTTCAAAAAATGCCTAAAATACTgtgaaataatacattttcacaATGCAATTGATCCCTGAAGTGCAAACTCCTCCTATTTGATAAATTTAAGCAGATTTAACAAATGCTAACAGGCATTTCAAAGTTTGGATATTTATGCCCCAGATGTGGTTTATAGAGTATCAGTACCTGTGTGTCTTCACAATTAAGTTGtcctttttactttttgtattATGCTTAAAACAGTAACCTGAAATGTGAGAGCGCGTTTTGAAATAATTGGTTTTATGCTAATCCTATGGTTAGTGGCAGTGGACAACATGGTTTTGTAAAAGAGTCGCTTTTGAAacttttattattatagctcactttttgtttttgttttaattgctACCTATTCAGTTCTGCGTCTCCGTGTCTGATATGCAGATGGAGAATTGTTTTGttgtaagaaaaataaaaaataaaatttcaaaGTTT
>XM_039778271.1
GGATACGAAGATCCGCACAAGACCCTTCCGTCTGTCGTGGTGCATGTCCGGGGTCTGGTGGACGGTGTTACGGAGGCTGATCTGGTGGAGGCCTTGCAAGAATTTGGAGCAATCAGCTATGTGGTGGTGATGCCCAAGAAGCGCCAGGCACTGGTGGAGTACGAAGACATGAACGGGGCGTCCACAGCCGTAACCTACGCTGCAGACAACCAGGTTTACATCGCCGGCCACCCAGCCTTTATCAACTACTCCACCAGCCAGAAGATCTCGAGGCCGGGAGACTCTGATGACTCTCGAAGCGTTAACAATGTTCTTCTGCTCACCATCATGAACCCGATCTACCCCATCACCTCGGATGTCCTCTACACCATCTGCAACAACTGTGGACCTGTCCAGAGAATCGTCATCTTCAGGAAGAATGGCGTCCAAGCGATGGTTGAGTTTGACTCTGTGCAAAGCGCCCAGCGCGCCAAGGCATCCCTCAACGGCGCAGACATCTACTCTGGTTGCTGCACGCTGAAGATCGAGTACGCCAAGCCCACTCGCCTGAATGTGTTCAAGAATGACCAAGACACCTGGGACTACACAAACCCCAACCTGGGAGGCCCAGATGGTGATGCAGATGGCAATGGGAGCAATTCAGAAGATGTAAATGCCAACCCCAACAAGCGCCAGAGACAGCCTGCTCTGCTGGGCGACCACCCTCCAGACTACGGCGGTGGTTACCATGGCTACGACGAGAGCTACGGCTCCCCGCCCTACGAGGGTCGCCGCATGGGTCCACCGATGAGAGGGCGTGGCGGGAGAAGCTACGGGCCGAGCTACGgacctcctccccctccccccggCGAGTACGGTGGCCACGCCGAGTCGCCGGTCGTCATGTTGTACGGGTTGGAGCCCGTCAAGATGAACGCCGACCGTGTCTTCAATATCTTTTGTCTCTATGGCAACGTAGAGCGGGTGAAGTTCATGAAGAGTAAGCCTGGGGCAGCCATGGTGGAAATGGGAGACTGCTATGCAGTGGATCGCGCCATCACTCACCTCAACAACAACTTTCTCTTTGGACAGAGACTGAATGTGTGCGTTTCCAAGCAGCAGGCCATCGTCCCTGGCCAGTGCTACGACCTGGAGGACGGCTCCACCAGTTTCAAAGACTTCCACGGCTCCAGGAACAACCGCTTCACGTCGCCAGAACAGGCGGCCAAAAACCGCATCCAGCACCCGAGCAACGTGTTGCACTTCTTCAACGCCCAGCCAGACGTCACGCCAGAGATTTTCAATCAGATTTGTGACGAGATCGGTGTCAAGAGCCCCGTCAACGTCAAAATGTTCACAGGAAAGAGCGGCGCGGCTCCCAGCGACCGCAGTGCTTCAGGGCTCCTGGAGTGGGAGTCCATCAACGATGCCATGGAGGCCCTGGCCATGATGAACCACTACCAGATGAAAAATGCAGGTATGGCTGGTCCTTACCCGTACACCCTCAAACTGTGCTTCTCCACCGTTCAGCACGCCAACTGAGCGCTCCCTCGTAGCCAGTGAGATGAAGATTGGTCCACCATTCCCGTGTACACATGTATTTAGACCATGACTGCTTGCAACGCCTGGAGATAGATTTTTCAAAAAATGCCTAAAATACTgtgaaataatacattttcacaATGCAATTGATCCCTGAAGTGCAAACTCCTCCTATTTGATAAATTTAAGCAGATTTAACAAATGCTAACAGGCATTTCAAAGTTTGGATATTTATGCCCCAGATGTGGTTTATAGAGTATCAGTACCTGTGTGTCTTCACAATTAAGTTGtcctttttactttttgtattATGCTTAAAACAGTAACCTGAAATGTGAGAGCGCGTTTTGAAATAATTGGTTTTATGCTAATCCTATGGTTAGTGGCAGTGGACAACATGGTTTTGTAAAAGAGTCGCTTTTGAAacttttattattatagctcactttttgtttttgttttaattgctACCTATTCAGTTCTGCGTCTCCGTGTCTGATATGCAGATGGAGAATTGTTTTGttgtaagaaaaataaaaaataaaatttcaaaGTTT
>XM_039778279.1
CTGCTGTACTGGGCGTGAATACACGAGCCTCGTTTTTCTTGACTTTTCCGTCCATTTCAGTTCTTCGTCACTACCACCATCCTTTTTAACCGGGACAACATGGCTACTGCAGCGAGCCGTTACTACAGCGAAGACGGTAGGGCAACGAAACGACAGAAAACCGACGGAATGGCCACGGGATACGAAGATCCGCACAAGACCCTTCCGTCTGTCGTGGTGCATGTCCGGGGTCTGGTGGACGGTGTTACGGAGGCTGATCTGGTGGAGGCCTTGCAAGAATTTGGAGCAATCAGCTATGTGGTGGTGATGCCCAAGAAGCGCCAGGCACTGGTGGAGTACGAAGACATGAACGGGGCGTCCACAGCCGTAACCTACGCTGCAGACAACCAGGTTTACATCGCCGGCCACCCAGCCTTTATCAACTACTCCACCAGCCAGAAGATCTCGAGGCCGGGAGACTCTGATGACTCTCGAAGCGTTAACAATGTTCTTCTGCTCACCATCATGAACCCGATCTACCCCATCACCTCGGATGTCCTCTACACCATCTGCAACAACTGTGGACCTGTCCAGAGAATCGTCATCTTCAGGAAGAATGGCGTCCAAGCGATGGTTGAGTTTGACTCTGTGCAAAGCGCCCAGCGCGCCAAGGCATCCCTCAACGGCGCAGACATCTACTCTGGTTGCTGCACGCTGAAGATCGAGTACGCCAAGCCCACTCGCCTGAATGTGTTCAAGAATGACCAAGACACCTGGGACTACACAAACCCCAACCTGGGAGGCCCAGATGGTGATGCAGATGGCAATGGGAGCAATTCAGAAGATGTAAATGCCAACCCCAACAAGCGCCAGAGACAGCCTGCTCTGCTGGGCGACCACCCTCCAGACTACGGCGGTGGTTACCATGGCTACGACGAGAGCTACGGCTCCCCGCCCTACGAGGGTCGCCGCATGGGTCCACCGATGAGAGGGCGTGGCGGGAGAAGCTACGGGCCGAGCTACGgacctcctccccctccccccggCGAGTACGGTGGCCACGCCGAGTCGCCGGTCGTCATGTTGTACGGGTTGGAGCCCGTCAAGATGAACGCCGACCGTGTCTTCAATATCTTTTGTCTCTATGGCAACGTAGAGCGGGTGAAGTTCATGAAGAGTAAGCCTGGGGCAGCCATGGTGGAAATGGGAGACTGCTATGCAGTGGATCGCGCCATCACTCACCTCAACAACAACTTTCTCTTTGGACAGAGACTGAATGTGTGCGTTTCCAAGCAGCAGGCCATCGTCCCTGGCCAGTGCTACGACCTGGAGGACGGCTCCACCAGTTTCAAAGACTTCCACGGCTCCAGGAACAACCGCTTCACGTCGCCAGAACAGGCGGCCAAAAACCGCATCCAGCACCCGAGCAACGTGTTGCACTTCTTCAACGCCCAGCCAGACGTCACGCCAGAGATTTTCAATCAGATTTGTGACGAGATCGGTGTCAAGAGCCCCGTCAACGTCAAAATGTTCACAGGAAAGAGCGGCGCGGCTCCCAGCGACCGCAGTGCTTCAGGGCTCCTGGAGTGGGAGTCCATCAACGATGCCATGGAGGCCCTGGCCATGATGAACCACTACCAGATGAAAAATGCAGCTGGTCCTTACCCGTACACCCTCAAACTGTGCTTCTCCACCGTTCAGCACGCCAACTGAGCGCTCCCTCGTAGCCAGTGAGATGAAGATTGGTCCACCATTCCCGTGTACACATGTATTTAGACCATGACTGCTTGCAACGCCTGGAGATAGATTTTTCAAAAAATGCCTAAAATACTgtgaaataatacattttcacaATGCAATTGATCCCTGAAGTGCAAACTCCTCCTATTTGATAAATTTAAGCAGATTTAACAAATGCTAACAGGCATTTCAAAGTTTGGATATTTATGCCCCAGATGTGGTTTATAGAGTATCAGTACCTGTGTGTCTTCACAATTAAGTTGtcctttttactttttgtattATGCTTAAAACAGTAACCTGAAATGTGAGAGCGCGTTTTGAAATAATTGGTTTTATGCTAATCCTATGGTTAGTGGCAGTGGACAACATGGTTTTGTAAAAGAGTCGCTTTTGAAacttttattattatagctcactttttgtttttgttttaattgctACCTATTCAGTTCTGCGTCTCCGTGTCTGATATGCAGATGGAGAATTGTTTTGttgtaagaaaaataaaaaataaaatttcaaaGTTT

Function

symbol description
hnrnpl Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Is expressed in central nervous system and neural keel. Human ortholog(s) of this gene implicated in hepatocellular carcinoma; lung cancer; and systemic scleroderma. Orthologous to human HNRNPL (heterogeneous nuclear ribonucleoprotein L).

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein L isoform X1

GO: NA

KEGG:

id description
K13159 HNRNPL; heterogeneous nuclear ribonucleoprotein L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778254.1 False 1775 mRNA 0.56 15 12637723 12651075
XM_039778261.1 False 2147 mRNA 0.51 14 12637166 12648534
XM_039778271.1 False 2078 mRNA 0.51 13 12637166 12648534
XM_039778279.1 True 2249 mRNA 0.51 14 12637166 12651073

Neighbor

gene id symbol gene type direction distance location
ech1 ech1,LOC101464128,LOC102289637 coding downstream 16651 12613881 ~ 12620515 (-)
med17 med17 coding downstream 51668 12573677 ~ 12585498 (-)
LOC120554567 NA coding downstream 71121 12565855 ~ 12566045 (-)
LOC120554484 NA coding downstream 72274 12564729 ~ 12564892 (-)
LOC120554559 NA coding downstream 74667 12562309 ~ 12562499 (-)
LOC120548705 NA coding upstream 225512 12876587 ~ 12907961 (-)
actn4 actn4,LOC106956878 coding upstream 260423 12911498 ~ 12983519 (-)
zgc:85932 LOC102780342 coding upstream 338722 12989797 ~ 13021862 (-)
trnak-uuu_3 NA coding upstream 347892 12998967 ~ 12999039 (-)
trnak-uuu_5 NA coding upstream 353142 13004217 ~ 13004289 (-)
G16554 NA non-coding downstream 60583 12576233 ~ 12576583 (-)
G16531 NA non-coding downstream 193157 12443629 ~ 12444009 (-)
G16528 NA non-coding downstream 221253 12413484 ~ 12415913 (-)
G16525 NA non-coding downstream 242329 12394490 ~ 12394837 (-)
G16439 NA non-coding downstream 378542 12257150 ~ 12258624 (-)
G16676 NA non-coding upstream 171354 12822429 ~ 12822922 (-)
G16678 NA non-coding upstream 217806 12868881 ~ 12911173 (-)
G16688 NA non-coding upstream 364550 13015625 ~ 13137068 (-)
G16706 LOC101165163 non-coding upstream 472644 13123719 ~ 13125662 (-)
G16709 NA non-coding upstream 513742 13164817 ~ 13165594 (-)
LOC120544465 islr2 other downstream 7074 12625965 ~ 12630092 (-)
LOC120554539 NA other downstream 94711 12542265 ~ 12542455 (-)
LOC120554398 NA other downstream 95783 12541220 ~ 12541383 (-)
LOC120554618 NA other downstream 97144 12539837 ~ 12540022 (-)
LOC120554358 NA other downstream 98291 12538712 ~ 12538875 (-)
srsf7a srsf7,LOC103358184 other upstream 3530 12654605 ~ 12662190 (-)
slc8a2b LOC102291167 other upstream 13124 12664199 ~ 12855727 (-)
ccdc9 ccdc9 other upstream 573839 13224914 ~ 13261849 (-)
sae1 sae1 other upstream 662368 13313443 ~ 13335153 (-)
si:ch211-14c7.2 LOC103364094,LOC102787713,LOC101474093,LOC102298349,LOC106947863,LOC103138296,LOC106921473 other upstream 1011832 13662907 ~ 13762368 (-)

Expression


Co-expression Network