sars2 (sars2,LOC102787987)


Basic Information

Item Value
gene id sars2
gene name sars2,LOC102787987
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 19671088 ~ 19681020 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779119.1
CAACATTAACCACAAGACAAACATGGCGACCTGCATCGGCATGGTCGCAAGAGTTGGAGGCACCGTTCTGACTGCGTTAAAGCCGGTAGCGAGACAATGTTCAAGGCAGAGGACACGTGTGTTCATCCCGCACCGCTTTTCACACGGAGCCCGGAGCAGTTTGTACGAACATGTCCGTGAAGGTTATAGCGAGAAGCCCGAGCTCGATATGAGAGCAGTGTGTGAGGAGACCGACAAAGTCATAGCAAATGTAGAGAACAGGAAGGGGGACCTGCGAGGGGACGATGTCAGGAATATTGTATGTGTGTGGCAGGAGCTTCAGGCAGTGAAGACAGAAATCTCGGGGCTGGAGGAGCAGAAGAAACACATCAGTGACACAGTCAAAGCACTAGTGGCCAAGAACGACAAGAAAGCCCTTGGCAATCTTCCAGAGTACACCCAGGCTCTGCAGAAGGGCCGAGAGATCCGCAACAGACTGAATCAACTTTACCCCAAAGAGACTGAGCTGGATCAGGAACACTATGGACGAGCGCTCAGACTGCCAAACGCCACACACCCTGATGTgccAGTTGGAGACGAGAGCCAGGCAAGAGTGGTGGAGCTGGTTGGACAGAAACCAGaGTTTGACTTCAAGCCTAGGGGCCATGTAGAGCTGGGGGAGGAGTTGGGTCTCATCAGGCAGCGACATCTAGCTCATGTCTCAGGCCACAGGTCCTACTATCTGAGGGGAGCAGGGGCCAGACTTCAGACTGCACTCCAAAATTTTGCCCTTGACACACTGCAGCGACGGGGCTTCATTCCTATGGTTGTGCCTGACATGCTGAAGGGGGCAGTGTTTGAGGGTTGTGGAATGCAGCCCAACGCCCATCGCTCTCAGGTCTATTCTCTGGACCAGGCCCGTTTCCCAGACCTCAATCTGGCTGGGACTGGAGAGGTCGGGGTGGCAGGCTATTTCATGGATCATGCAGTAAACTGGAAGGACCTGCCTGTCAGGACAGTGTGCAGCAGCACCTGCTACAGAGCAGAGACGgacacaggcagagagacatgGGGGCTCTACAGAGTACATCACTTTAACAAGGTGGAGATGTTTGGAGTAACAGCAGATGAGACAGGAGAAGAGAGCTCTCAGCTGCTCGGGGAGTTTGTCTCTTTGCAGAAAGAGATGTTCTCTGCACTGGAACTACACTACAGAGTGCTGGACATGCCGACACAGGAACTGGGTCCTCCTGCACACCGAAAGTATGACATTGAAGCATGGATGCCTGGGAGGGACAGCTATGGAGAGaTTTCCAGTGGATCCAACTGTACAGACTACCAAAGCAGACGCCTCAACATCCTGTATGAGAGAGAGGATGGCAGCCTGCAGTACGCCCACACAGTGAATGCTACAGCATGTGCCATCCCCCGAACCATCATCGCTATCCtggagactcatcagaccaaaGATGGAACAGTGCGTGTCCCCCGGGCCCTGCAGCCTTATTTGGGCCTAGAAGTGATCGAGACGCCAAAGTACACTCCACTGAAATACATCGGACCCAACCAGCCCAGTCGACCACCCAGGCCTGCTCCCAAGACCAGATGACACAAATACAAGCACACACCTGTAAACGCCTGAGGTGGGAGCCAGTTAACATTCAACCATCAAGTCAGACAAGAAAGTTGATATTTAACACTCATAAGGATGTTTCATACATTTTGTTGTATGACGGTTGTTAATGATCTCCATAGTCCTTCAGATTAAATGAAATACAGTCTGACTTTATAATTGTGTGAGTGCAACAATGTTTTAAGCCGATGGATCAGACCTTACCATCAGTTCCATTGtcactgtaaatatatttgtctttttttgtcaaaggCCATGAAATTGTGAATGCTAGCATGGATGTGTCTTGTCCAGCTCATGAGGACCATAATAAGGAATAACCAATAAAGATACGTCTTTAATTTC

Function

symbol description
sars2 Predicted to enable serine-tRNA ligase activity and tRNA binding activity. Predicted to be involved in mitochondrial seryl-tRNA aminoacylation. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be active in mitochondrion. Orthologous to human SARS2 (seryl-tRNA synthetase 2, mitochondrial).

NR:

description
serine--tRNA ligase, mitochondrial-like

GO:

id name namespace
GO:0006434 seryl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004828 serine-tRNA ligase activity molecular_function

KEGG:

id description
K01875 SARS, serS; seryl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779119.1 True 1957 mRNA 0.51 16 19671088 19681020

Neighbor

gene id symbol gene type direction distance location
LOC120545125 LOC106935408,LOC103155939,LOC106914189,LOC103474854,LOC102218288 coding downstream 517 19663258 ~ 19670571 (-)
psma6l LOC107094495,LOC106935416,LOC103474855,LOC103155941,LOC100701743,LOC106914191,LOC102789735 coding downstream 17264 19650041 ~ 19653824 (-)
LOC120552636 LOC107395012,LOC103364872,LOC101485936 coding downstream 33686 19633493 ~ 19637402 (-)
nop53 NA coding downstream 62067 19598150 ~ 19609021 (-)
LOC120548388 LOC104927217,LOC101068162,LOC100693448,LOC106522132,LOC103364869,LOC101175254,LOC102216590 coding downstream 75957 19564218 ~ 19595131 (-)
LOC120575197 NA coding upstream 191459 19872479 ~ 19891955 (-)
LOC120575210 tcaf2 coding upstream 211522 19892542 ~ 19906151 (-)
LOC120575221 NA coding upstream 233103 19914123 ~ 19925101 (-)
si:ch1073-280e3.1 NA coding upstream 252473 19933493 ~ 19940419 (-)
nudt8 LOC107720444 coding upstream 268198 19949218 ~ 19953810 (-)
G18184 NA non-coding downstream 21436 19649216 ~ 19649652 (-)
G18179 NA non-coding downstream 42448 19625403 ~ 19628640 (-)
G18155 NA non-coding downstream 128417 19456213 ~ 19542671 (-)
LOC120573122 NA non-coding downstream 129958 19538375 ~ 19541130 (-)
G18127 NA non-coding downstream 265727 19383403 ~ 19405361 (-)
LOC120548779 coq8b,LOC103364879,LOC107395920,LOC108247334 non-coding upstream 73867 19754887 ~ 19755993 (-)
G18216 NA non-coding upstream 170884 19851904 ~ 19856310 (-)
G18329 cep164 non-coding upstream 372200 20053220 ~ 20054134 (-)
G18337 NA non-coding upstream 435265 20116285 ~ 20119606 (-)
G18366 NA non-coding upstream 503791 20184811 ~ 20258055 (-)
LOC120545639 eif4g1 other downstream 1448195 18179013 ~ 18222893 (-)
zgc:165508 fam131a,LOC102799247 other downstream 1519120 18127466 ~ 18151968 (-)
LOC120552194 NA other downstream 1780427 17799999 ~ 17890661 (-)
xaf1 LOC107094331 other downstream 2192185 17472947 ~ 17478903 (-)
G17597 NA other downstream 2740094 16848161 ~ 16930994 (-)
fbxo46 fbxo46,LOC102786997 other upstream 20207 19701227 ~ 19717307 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other upstream 119731 19800751 ~ 19810130 (-)
LOC120547993 NA other upstream 456052 20137072 ~ 20141538 (-)
si:ch1073-340i21.1 NA other upstream 1413157 21094177 ~ 21097201 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other upstream 1556168 21237188 ~ 21261923 (-)

Expression


Co-expression Network