clip3 (clip3)


Basic Information

Item Value
gene id clip3
gene name clip3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9750631 ~ 9797726 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780891.1
gagagagagagagagagagagagagagagagagagagagagagagcgtcaGTGTTGTTCGTGCAGTGGaccagagaagagagagactcATCACAGAGGAACCAGCGGCTTGTTTtcagGCCCTCACCATGACTAAAGAGGAGAACCTGGAGGtgcaggagaaggagaggcaCGACCgcgaggaggagcaggaggaggaccGCGTCCAAAAGGAGGAGGCTCtgacggaggaggaggaggaggaggaggaagaggaggaatatgagcaggaaggagagaaggaaggagaggacagagccgaggtggaggaggtggaggaggacgaggcggagagagaggaagaggaggctccACCGTCCGGCGAGCCCGAGCCAGAGCCGGAGCCTGAGCCCGAGCCCCTGTCGGTGTCCGAGTACCAGAGTCCGGTTCACGAGCCCCGACGCAGACCTATGGTGCACCCCTCCGCCCAGGCGCCGCTGCCCAAAGACTACACTTTCACCTTCTTCGACCCCAATGACCCGGCTTGTTTGGAGATCCTGATGGATCCTCAGACCACCATCCCCGAGCTGTTCGCCATCGTGCGCCAATGGGTTCCCCAGGTGCAGCACAAGATCGACATCATCGGCAAAGAGATCCTGAAGCGTGGTTGCCATGTGAACGACCGCGACGGTTTGACGGACATGACGCTGCTTCACTACAGCTGCAAGGCCGGAGCGCACGGCGTCGGCGACCCCGCGGCCGCGCTGCGTCTCAGCAGTCAGCTGATCGCTCTGGGCGCCGATGTGAGTCTGAGGAGCCGCTGGACCAACATGAACGCGCTGCACTACGCCGCCTACTTTGATGTCCCGGAACTGATCCGGGTCCTGCTCAAAGGCACCAAACCCAGagTGCTGAACTCCACCTGCAGTGATTTCCACTACGGCACGGCGCTGCACATCGCCGCCTCCAACCTCTGCCTGGGAGCCGTCAAGTGTCTGCTCGAGCACGGCGCCAGCCCCATCGTCAGgaACGATAAGGGCCAGGTCCCCGGCGAGGTAGTTCCTGACCCGATGGACATGAGTCTGGACAAGGCGGAGGCCGCCATGGTGGCCAAAGAGCTGAAGCAGCTGCTGCTGGACGCGGTGCCTCTGAGCTGCAACCTTCCCCGAGCCACGCTGGCCAACTACGACAACATCCCCGGAAACCTGATGCTGACCTCGCTGGGGCTGAAGCTCGGCGAGCGCGTCATGGTGGACGAGATGAAGCTCCAGAGAGACCAGGGCAGAGATGACAGCCCGGCTGCAAAGCTCCAACAGCCCGGCACTCTGAGGTTTTGTGGCACCACGGAGTTCGCCAGCGGTCAGTGGGTTGGCGTGGAGCTGGACGAGCCCGAGGGGAAGAACGACGGCAGCGTGGGTGGAGTCCGCTACTTCATCTGCCCTCCGAAACTAGGGATATTTGCCCCGGTGTCAAAGATTTCCAAAGCTGTGGATCAGGCGCCTTCATCGGTCACCTCGACCCCGCGGACGCCCCGCATGGACCTGGCCTCCCGCCTCGCCGGGAAGAccaagaaggagaaagagaagaaggagaagcagagagagaaagctcaaaagaaaaagacgTCAGTCGCCAGTCTGGACCCGGAGGGACTGAACGTGGAGGTTGGAGACCAGGTTCTGGTGGCCGGACAGAAACACGGCATCGTCCGCTTCTACGGAAAGACAGActttgctccagGTTACTGGTTTGGTATCGAGCTGGATCAGGCGACGGGGAAACACGACGGCTCGGTGTTTGGAGTCCGCTACTTCAGCTGCCTGCCCAAATATGGAGTGTTTGCTCCACCGTCCCGGGTTCAGAGAATCGGAGGCCCTAAAGAaggcacacagaacaacaactCCATGGTGAAGAAAGTCCACCAAGTCACCATGTCACAGCCGAAGCGTAACTTCAACGCGAAGCGTTCGCCCAAAGACCTGACCTCCGAGAGCTCCATATCCAGgCTGCTGTTCTGCTGTTGGTTTCCGTGGATGCTGCGTGCTGAGATGCAGTCCTAACCAcgccctcctccttcctcctctacTTCTCCACCAGATCAATCTCTCCGCTCTactttctcttcatctctcacTTCTTTTGCTTTTGGTCTCTTCAGACGTTCACTGTCGTCAGTCAGACTTCTCGTAGTGAAACCCCCGTCCCTCTAC
>XM_039780892.1
gagagagagagagagagagagagagagagagagagagagagagagcgtcaGTGTTGTTCGTGCAGTGGaccagagaagagagagactcATCACAGAGGAACCAGCGGCTTGTTTtcagGCCCTCACCATGACTAAAGAGGAGAACCTGGAGGtgcaggagaaggagaggcaCGACCgcgaggaggagcaggaggaggaccGCGTCCAAAAGGAGGAGGCTCtgacggaggaggaggaggaggaggaggaagaggaggaatatgagcaggaaggagagaaggaaggagaggacagagccgaggtggaggaggtggaggaggacgaggcggagagagaggaagaggaggctccACCGTCCGGCGAGCCCGAGCCAGAGCCGGAGCCTGAGCCCGAGCCCCTGTCGGTGTCCGAGTACCAGAGTCCGGTTCACGAGCCCCGACGCAGACCTATGGTGCACCCCTCCGCCCAGGCGCCGCTGCCCAAAGACTACACTTTCACCTTCTTCGACCCCAATGACCCGGCTTGTTTGGAGATCCTGATGGATCCTCAGACCACCATCCCCGAGCTGTTCGCCATCGTGCGCCAATGGGTTCCCCAGGTGCAGCACAAGATCGACATCATCGGCAAAGAGATCCTGAAGCGTGGTTGCCATGTGAACGACCGCGACGGTTTGACGGACATGACGCTGCTTCACTACAGCTGCAAGGCCGGAGCGCACGGCGTCGGCGACCCCGCGGCCGCGCTGCGTCTCAGCAGTCAGCTGATCGCTCTGGGCGCCGATGTGAGTCTGAGGAGCCGCTGGACCAACATGAACGCGCTGCACTACGCCGCCTACTTTGATGTCCCGGAACTGATCCGGGTCCTGCTCAAAGGCACCAAACCCAGagTGCTGAACTCCACCTGCAGTGATTTCCACTACGGCACGGCGCTGCACATCGCCGCCTCCAACCTCTGCCTGGGAGCCGTCAAGTGTCTGCTCGAGCACGGCGCCAGCCCCATCGTCAGgaACGATAAGGGCCAGGTCCCCGGCGAGGTAGTTCCTGACCCGATGGACATGAGTCTGGACAAGGCGGAGGCCGCCATGGTGGCCAAAGAGCTGAAGCAGCTGCTGCTGGACGCGGTGCCTCTGAGCTGCAACCTTCCCCGAGCCACGCTGGCCAACTACGACAACATCCCCGGAAACCTGATGCTGACCTCGCTGGGGCTGAAGCTCGGCGAGCGCGTCATGGTGGACGAGATGAAGCCCGGCACTCTGAGGTTTTGTGGCACCACGGAGTTCGCCAGCGGTCAGTGGGTTGGCGTGGAGCTGGACGAGCCCGAGGGGAAGAACGACGGCAGCGTGGGTGGAGTCCGCTACTTCATCTGCCCTCCGAAACTAGGGATATTTGCCCCGGTGTCAAAGATTTCCAAAGCTGTGGATCAGGCGCCTTCATCGGTCACCTCGACCCCGCGGACGCCCCGCATGGACCTGGCCTCCCGCCTCGCCGGGAAGAccaagaaggagaaagagaagaaggagaagcagagagagaaagctcaaaagaaaaagacgTCAGTCGCCAGTCTGGACCCGGAGGGACTGAACGTGGAGGTTGGAGACCAGGTTCTGGTGGCCGGACAGAAACACGGCATCGTCCGCTTCTACGGAAAGACAGActttgctccagGTTACTGGTTTGGTATCGAGCTGGATCAGGCGACGGGGAAACACGACGGCTCGGTGTTTGGAGTCCGCTACTTCAGCTGCCTGCCCAAATATGGAGTGTTTGCTCCACCGTCCCGGGTTCAGAGAATCGGAGGCCCTAAAGAaggcacacagaacaacaactCCATGGTGAAGAAAGTCCACCAAGTCACCATGTCACAGCCGAAGCGTAACTTCAACGCGAAGCGTTCGCCCAAAGACCTGACCTCCGAGAGCTCCATATCCAGgCTGCTGTTCTGCTGTTGGTTTCCGTGGATGCTGCGTGCTGAGATGCAGTCCTAACCAcgccctcctccttcctcctctacTTCTCCACCAGATCAATCTCTCCGCTCTactttctcttcatctctcacTTCTTTTGCTTTTGGTCTCTTCAGACGTTCACTGTCGTCAGTCAGACTTCTCGTAGTGAAACCCCCGTCCCTCTAC

Function

symbol description
clip3 Predicted to enable microtubule plus-end binding activity. Predicted to be involved in cytoplasmic microtubule organization. Predicted to be active in cytoplasm; microtubule plus-end; and nucleus. Orthologous to human CLIP3 (CAP-Gly domain containing linker protein 3).

NR:

description
PREDICTED: CAP-Gly domain-containing linker protein 3 isoform X1

GO: NA

KEGG:

id description
K10423 CLIP3_4; CAP-Gly domain-containing linker protein 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780891.1 True 2188 mRNA 0.60 15 9750631 9797726
XM_039780892.1 False 2137 mRNA 0.60 14 9750631 9797726

Neighbor

gene id symbol gene type direction distance location
LOC120547748 LOC100707466,LOC102206406,LOC103373746,LOC101483620,LOC102290800 coding upstream 124850 9603260 ~ 9625781 (+)
LOC120551143 NA coding upstream 196015 9544019 ~ 9554616 (+)
LOC120543784 NA coding upstream 411463 9331567 ~ 9339168 (+)
LOC120543792 NA coding upstream 421119 9309207 ~ 9329512 (+)
LOC120543803 NA coding upstream 435309 9309199 ~ 9315322 (+)
trnar-ucu_10 NA coding downstream 72107 9869833 ~ 9869924 (+)
trnar-ucu_11 NA coding downstream 86787 9884513 ~ 9884604 (+)
si:ch211-137a8.4 LOC103372141,LOC107102523,LOC105915351,LOC101172006,LOC106961384,LOC103378353 coding downstream 258268 10055994 ~ 10119839 (+)
LOC120550666 LOC105915347 coding downstream 561663 10359389 ~ 10376811 (+)
LOC120548947 LOC103372137,LOC102304476 coding downstream 607463 10405189 ~ 10424770 (+)
G15668 NA non-coding upstream 57153 9692403 ~ 9693478 (+)
G15666 NA non-coding upstream 65270 9685016 ~ 9685361 (+)
G15662 NA non-coding upstream 69727 9680167 ~ 9680904 (+)
G15660 NA non-coding upstream 86319 9664001 ~ 9664312 (+)
G15638 NA non-coding upstream 94968 9600506 ~ 9655663 (+)
G15684 NA non-coding downstream 14120 9811846 ~ 9812132 (+)
G15713 NA non-coding downstream 60734 9858460 ~ 9865893 (+)
G15710 NA non-coding downstream 69117 9866843 ~ 9867351 (+)
G15714 NA non-coding downstream 76579 9874305 ~ 9935771 (+)
G15718 NA non-coding downstream 121857 9919583 ~ 9919919 (+)
G15640 NA other upstream 81102 9598313 ~ 9669529 (+)
G15642 NA other upstream 82152 9645137 ~ 9668479 (+)
LOC120551159 fam13c other upstream 97800 9631391 ~ 9652831 (+)
serp1 NA other upstream 264784 9411490 ~ 9485847 (+)
G15628 NA other upstream 291414 9458478 ~ 9459217 (+)
LOC120551195 NA other downstream 68984 9866710 ~ 10003372 (+)
G15712 NA other downstream 204524 10002250 ~ 10003595 (+)
zgc:101731 LOC106580895,LOC100194580,LOC103372138 other downstream 590506 10388232 ~ 10505338 (+)
G16267 NA other downstream 2096778 11894504 ~ 11900873 (+)
G16467 clns1a,LOC102781126 other downstream 2598269 12395995 ~ 12409274 (+)

Expression


Co-expression Network