LOC120546381 (LOC103363428,LOC101062185,LOC102204297)


Basic Information

Item Value
gene id LOC120546381
gene name LOC103363428,LOC101062185,LOC102204297
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 39759961 ~ 39777920 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781311.1
TGATGCAGCAACCCGAAGTGAAAATGGGCGGTGATTGCTGAAGATGCGTAGTCTGCCCATGAGTTTTGAGCGCGCAGTTTAGTGCGACAGGATGCATTTCGTTTTCACCTGATCCGACGTGGCGTGTATTTTCCAGAGCCATAGTGTATGTGCAGGGCAGTAGCCTACTATTACCTTAATGCCCATACAGACGAGAGAGCGAAAGGGCCGAGCAGGGGATTGCATGACACGTGCCAATAAGTAACGGTGTCTCCAGTGGATACTTTGATACGATGAGGATCCGAGCACGCAAGTTTTCCTCCTGACAGCCGCGTCCTCTGCTTCTCCGTCGAGTGGGTTTGGAGTAAATCACAACCGGGAAGCAACAGGAGAAAGtcttGCGATTTCTCATCCATTCTCAGTTGAGACTGTGGTGCTGTTGCAGCAATGTCACAGCTGTATTACCGAAAACCGGACAACTCCTCATACAGGGACCGCATCCCTCTGCGGATCGTGCGGGCCGAGTCTGAGCTCTCTGCCCTGGAGAAGGCCTACCTGGGGGCTGTTGAGAAGGGGGACTATGCCAGTGTGAAACAAGCCCTGGTGGAGGCTGAGATCTACTTCAGGATCAACATCAACTGCATCGACCCCCTGGGGCGCACAGCGCTGCTCATTGCCATAGACAATGAGAACCTGGAGATCATTGACCTGCTGCTCAGCTATAATGTATATGTAGGGGATGCCCTGCTGCATGCCATCCGGAAAGGAGTGGTGGGGGCCGTGGAGCTGCTGCTCAACCACAAGAAGCCCCGTGGGGAAAAACAGGTCCCACCAATTCTACTCGACAGACAGTTTTCAGACTTCACCCCAGACATCACTCCAATCATCCTTGCAGCCCACACTAACAACTATGAGATCATCAAACTGCTCGTGCAGCGAGGTGTTTCCGTACCTCAGCCACATGCTGTGCGCTGCAACTGCGTGGAGTGCGTGTCCAGTTCAGACGTGGACAGCCTACGCCACTCGCGCTCTCGCCTTAACATCTACAAGGCCCTTGCCAGCCCGTCCCTGATCGCCCTGTCCAGCGAGGATCCTTTCCTCACGGCCTTTCAGCTCAGCTGGGAGCTGAAGGAGCTCAGCAGAGTAGAGAACGAGTTCAAGTCAGAGTATGAGGAGCTGTCCCATATGTGTAAACAGTTTGCAAAGGACCTCTTGGACCAGACCCGAAGCTCTAAAGAGTTGGAAATAATACTCAACTACCGTGATGACATGAACCCTCTGCTGGATGAGACCACTAATGATCTGGCCCGACTGAAGCTGGCTATCAAATTTTGCCAGAAAGAGTTTGTTGCTCAGCCCAACTGTCAGCAGCTGCTGGCGTCTCGGTGGTATGATGAGTTTCCAGGCTGGAGGAGGCGTCACTGGGCAGGAAAACTCATCACATGTATCTTCATTGGCCTCCTCTTCCCACTGTTATCCATCTTATACCTGATCACTCCAAAGAGCCGCTATGGCTTATTCATCCGTAAGCCCTTCATCAAGTTCATCTGTCACACTGCTTCCTACCTgaccttcctcttcctgctctTCTTGGCCTCACAGCATATAGCCGCTGCACACCCGGAACATCAAGGCCCAAAACCCACCACTGTGGAATGGATGATCCTGCCCTGGGTGCTTGgttTTATATGGACTGAGATCAAGCAGATGTGGGATAGTGGTTTCCAAGACTACATAGATGACTGGTGGAACTTAATGGACTTCATAATGAACTCCTTGTATCTTGCAACTATTTCTCTGAAAATTGTTGCCTTTGCAAAGtacagtgggaACAAACCCAGAGACAGCTGGGAAATGTGGCACCCAACTTTGGTTGCAGAGGCATTGTTTGCCATCGCCAACATCTTCAGCTCCTTGCGCCTCATCTGCCTTTTCACTGCCAACTCCCATCTTGGCCCATTACAGATCTCACTGGGCCGCATGCTCCTGGACATCCTCAAGTTTCTCTTCATCTATTGTCTAGTGCTGTTAGCCTTTGCCAATGGCCTCAACCAGCTCTACTTCTATTATGAAACCCAGGACAATAAGTGCAAGGGTATTCGCTGTGAAAAGCAAAACAACGCCTTCTCAACGCTGTTCGAGACACTGCAGTCATTATTTTGGTCTATATTTGGCCTGATTTCCCTCTATGTGACCAATGTGGAACCAGGACATGAATTTACTGAGTTTGTGGGCTCTACCATGTTTGGCACGTACAATGTCATCTCTCTGGTAGTGCTTCTGAACATGCTTATTGCAATGATGAACAACTCCTACCAGCACATTGCTGATCATGCCGATATAGAATGGAAATTTGCAAGAACAAAATTATGGATGAGCTATTTTGAAGAAGGGGGAACTTTGCCATCTCCATTTAATATAATACCAAGTCCAAAGtcagtttattatttatttggatGGATAAAGACGCTGTTGTTTAAGAGAACAAGCATAATAAGGCTCGAAACCTTTGAAAGTTTGGGGAGACGTGCAGCCGAAAATGTAAGAGTAAACCACGTGTATCAGGAAGTTTTGAGGAACCTTGTTAAGCGCTATGTGGCCGCAATGATCAGAGATGCCAAGACAGAGGAAGGCCTGACAGAAGACAATTTCAAGGAGCTAAAGCAAGATATCTCCAGCTTCCGCTACGAAGTCCTGGGAATGATGAAGGGGAACCCTCAAGGTGGTAACGTTGCAAGCTCCACCTTGGCTTACCCTGGAAACTCTTTCAAATATTCTCCCAAATTCCCTATTGATGAGCCTCAACAGACGCTGAACGTGTTTGATTTGACCGTCCCCACCCTGCAGAGGGGAGCTGCCTCCACCAGCTCTGGACAGGGCAGGCTCCCCTCTCAGAAATGTGATGAAATATACTCCTTGTCAGAGGAAGATACGTTGGGATCTGGTGGACGAAACCAAAACCGACTTCAGACTGAGAAAGTAATTGTGCAAGTCTTACAGAAAGTGGAGAAAGGACATTCAGGAGATTGAACATTCTTGCAATGAACACACTAAGGAAGTGAAAAATGGgccaaagaaatataaaaatgaatGGTTATCTGCAAGTGAGAAATGTTAATGAAACATTCTTGTTTTGGAATTTCATTTCATTGATCTACCACTTGTTTAACAATTTATCAAAATAATCAAATTCTCTCACAACTACATTCATATTCAGTTTATAATCTTGTTTTCTGTAATATATAGAGTATAATGGTATAATAATATGTTATCTCACATTATATTACATGCATTCACCTCTGATTGATAGAAGTTAGAAGAACAATACTGAGTGAGGACTGACCTCAGTAAGTGCTAACATGACGCTCAGGGAATTGTGAAGCAAGtaaataattcatattttacCTTGACAATTAATTCCAAAGAGCCCTGACACCCTGCTGCCTATCCTATCCTCTTGCACCTTGAACTGTCCTCTTGCTGTGATATGCAAAACTATCTTAAATCTCTTTgtctattaaaaatatatacatatattactCCTCATATGCTGACAGTATGCAGTCCCTTTTGCTAAAATAAATTATACAGGAAGAAATAATCAAGAACATCATTACATAAACACAAGTTTAGTTATATATAATACCGGAACAAATTCTATATTGAATTTGGACATAGTTGATTGACTAACAATGTAGCACCTAGCTAATTCAAAGCTTTGGGTCAGCCCTTTCACTCCACCATTACCTCCCTAACCTGTTTGGTGAGAGGGAATGTTTGACTCCTTATTCTGTTGTAGGAGCAGAAGAGGCACACTATGCCATCTAGTTGAGATTTGATGCAAGATGTATTCCTCAACCAAGTGCGCCATATACTATAACTTGCAGACATACTCTTGTGATCTGTGCGTTACTGTGCAATGCTGTAACTTGTAATGAAATTATTCtgcaattaaataaaag

Function

NR:

description
PREDICTED: short transient receptor potential channel 4-like

GO: NA

KEGG:

id description
K04967 TRPC4; transient receptor potential cation channel subfamily C member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781311.1 True 3941 mRNA 0.46 11 39759961 39777920

Neighbor

gene id symbol gene type direction distance location
LOC120546392 NA coding downstream 3383 39735716 ~ 39756578 (-)
LOC120546526 tuba1c,LOC101079871,LOC107557552,LOC106676044,LOC105935211,LOC101066234 coding downstream 63356 39693607 ~ 39696605 (-)
spartb LOC101480805,LOC102300300,LOC102204879,LOC102787978 coding downstream 68782 39680280 ~ 39691179 (-)
dclk1b NA coding downstream 85659 39639678 ~ 39674302 (-)
mab21l1 mab21l1,LOC103378173 coding downstream 182225 39575415 ~ 39577736 (-)
LOC120546419 LOC104923287,LOC104947775,LOC103363426,LOC101479268 coding upstream 90488 39868408 ~ 39901447 (-)
LOC120546408 NA coding upstream 114289 39892209 ~ 39901251 (-)
LOC120546558 LOC103363424,LOC104943694 coding upstream 126192 39904112 ~ 39912760 (-)
LOC120544420 bach1 coding upstream 449449 40227369 ~ 40260253 (-)
usp16 NA coding upstream 482440 40260360 ~ 40268274 (-)
G22773 NA non-coding downstream 48192 39711472 ~ 39711769 (-)
G22772 NA non-coding downstream 58079 39701506 ~ 39701882 (-)
G22679 NA non-coding downstream 528107 39227543 ~ 39231854 (-)
G22678 NA non-coding downstream 532558 39226744 ~ 39227403 (-)
G22658 LOC100690850 non-coding downstream 561476 39197174 ~ 39198485 (-)
LOC120546628 NA non-coding upstream 17027 39794947 ~ 39796770 (-)
G22807 LOC104960197,LOC102301626,LOC103363427,LOC101479746 non-coding upstream 21379 39799299 ~ 39801947 (-)
G22812 NA non-coding upstream 56344 39834264 ~ 39834463 (-)
G22813 LOC104947776,LOC100692726 non-coding upstream 60671 39838591 ~ 39838830 (-)
G22814 NA non-coding upstream 73117 39851037 ~ 39851236 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 1024138 38727508 ~ 38735823 (-)
robo2 NA other downstream 1111362 38353024 ~ 38648599 (-)
p4ha3 p4ha3 other downstream 2013679 37732841 ~ 37746282 (-)
LOC120571840 LOC103356713,LOC100701072,LOC102300918,LOC101484608,LOC102193268 other downstream 2061822 37692438 ~ 37698139 (-)
si:ch211-105f12.2 LOC103368707,LOC107379995,LOC102080198,LOC107090084 other downstream 2104166 37651459 ~ 37655795 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other upstream 165651 39943571 ~ 40033156 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other upstream 512085 40290005 ~ 40470176 (-)
cntn5 NA other upstream 2251753 42029673 ~ 42167037 (-)
LOC120574039 nlk,nlk2 other upstream 3458762 43236682 ~ 43346673 (-)
LOC120553425 NA other upstream 3923051 43700971 ~ 43716741 (-)

Expression


Co-expression Network