LOC120546408


Basic Information

Item Value
gene id LOC120546408
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 39892209 ~ 39901251 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781336.1
CCCAAAACAACAGACATTTTAGCTGTAGGCTAGGCTATAAAACAATGGCGCAGATGAAAGTTTGTGCTTGTTAATTGACCAAAACGGCTCACCAATGGGGTCTAAACAGTGGACTGCACACTTCATGACAGCCGGACAGAAAAACACAGCGAGGCCACAAACTCCAGCCGACACGCCGGGAGGAGCGCCTCAGCACGGACCGAGCCTAACCTCCAGTCCCTCCTGCTGCCTGCAGAGGTGTGAGCGGCCGGGGTGGCCGTGTTCTAACCTGGGCAGGGCGTGTCCTTTCCACGCAGGTAGTTTCGACACCCTTCTCTCGCGCTGTCCCGAGCTGTCGTCACGCTCTACTTTATGCTGGGGGAAGTTTCAACACGACAACGGACGAATAGGACGAAGACGGCGACACGCAGGAAAATGAGGCAGCATCTGAGTCTAACACAAAGTCTGAATGCATCATCCTAACGGACGACATTTTGGACAAGTCCCCTCCAACACAACTGCTGCATCACAATCCTATAAAAACAAGTCATTTAGAACGGCTTATATTTTACTGCAAATTCCTTACAGACTTAAactccgtctgtgtgtgtgtgtgactgagaccATGACCGCATCCCAAACCTGCTGAGAGCTCTTTGACAAAAGATGCAACCAGGAGGTCCTCCACCGCCTCCTCCACCGCCCCCTCCACCCCCgccacctcctccaccacctccacctccagccCTTGGCCTCCCTCCATCCCTACATGGCTCGGGCCTCATTGCCAGGGGAGCGCTCCGGCGCTCCACGATGCGCAATTTCAACTGGGAAACCCTTCCTCAACACAGTGTGATAGGAAAGCACAACATCTGGACAGCAGATAAGACTGATGGGGAGTACGAGCTGGACACTGATCACATGGAGGAGCTGTTCAGCAACAAGCAGGGCCAGCAACAACTCAAGGCCCTGAACCGCCAGAGTCTGAGGGGCCAGCCAACTGCCGCCTCAGGAGGGGTAATGGTTTCCATCCTCAGCTCCAAGAGAAGCATGAACATGGGAATTTTCCTGAAGCAATTCAAGCGGCCTGTAAAAGTCATGATTGACGAAATTAAATCAGGAAGTGGTCTCAGTTTTGGTTCTGGGAAACTGAAGGAGCTGTGCAAGCTGCTGCCAGATGAAGAAGAGGAGAAGCAGCTGCTCCGTTTTAAGGGCGACCACTTTTCTCTCCCAGAAGCAGATCTGTTCATGCTAATGCTGGTCAAGATTCCCAGTTATGGAGAGCGTCTCAGCAGCTTGGTGCTCAAAGAGGAATTTTTCCCCCTCATGCATGAAATGAAAGAATCCATATCCACTCTGACAGCAGCTGGAAAAGAGCTGTTGGAGTCTGATCATCTCCATTCTGTCATCCGCCTGGTACTGAAGACTGGAAATTACATGAATGCTGGTGGCTATGCAGGCAGTGCAATTGGCTTCCGAATGGCTTCTCTGTTGAAGTTAGTGGAcaccaaagcaaacaaacccGGAATGAATCTTATGCATTATGTCGTGATGCAAGCTCAGAAGGCAGATGTGGAGCTGCTTAACTTTACAGACCAACTCAAACACATTGAAGCTGCAGCAAGAATGAATAAAGGGGAAATTGAAGCAGAGTTTGAAAAGCAGGTGAAGAAGGTCCAAGATGCCAAAGCAGACACCTTGAAGCAAGAAGACCTCAAGGCACAGATGTGTGATTTTTTAAAGgaggctgaggtctGCTTGTCAGAAATAGAAATTGATCTTCAGCAATTGCAGTCAGTGAGTGACTCTGTGGCAGAGTACTTCTGTGAATCCCCAAACAAGTTCAAACTGGAGGAGTGCTGCTCCATTTTCAACTCCTTTTGTGAGAAATTTATGCGAGCCATGCAGgaaaacaAGGCTCGAGAGGAGGCAGAGGTGCAGCGGAGACACAGAGACCGGTTGCAGAATGTTACCAAGCGCAGGTCCACAGCTACCTGCTCCAGTAGAGACAAGGAAATGGATGAAGTTGCATTGCAATCCGTACTACAGAACTTCCTTACTAAACGTGTCTCTCGGAGGAGACCGGGATGGCCCTCATCCGCTCATGGAAGCCCCACGAGTGGCAGCCCCAACAACGGGAGTCTATCAGAAATAACCTCTCAGGCAAACCTCCCCACTGGAAATCAGAAAAGAGAAGGCTCTTTTAGAGCTGAGGACATGGGCAGAAAAGAGTGGAATTCAGCAGTTGAACTCACAGAGAACTCTTCACAAAAGAAAGCCCAGTCTAATAGCGAGGACAACAAGGCAAAAGGGGTCATTCCTCATGAAGAGGTGGTGAAAACGTCCAGAAAAGAGGACTCTAGAGGTTCTGCACACCCAGCCCATAGGACCACCAGCATTTTCGCCTCAGGCAGATCTTTCTCAGTCATCATTGATGGGAATGAGGAGGATAATAATGAAGAGGAGGCCCAAAAGTTGCGCGAAGCATCTAAAAAGGTTTTGCACTTTCAGAACAGCCGTGGCAGTGTCTCATCCGGGGATTATTCTCTGGAGAATCAGAAATCTCCTGGTCCAATTAAAACTTTGCCTCGTCAACGCACCTTCGATGAGGACACGGAGAAGTATCCTGGAGACCCAACCAGTCAGGATTTAGTTCGATTTTTGCTCGATCCTCAATCCACCTCAAAACCTAACCGCCGCCATACTCTTTCTACCGCAGTCCCTAAAACTAAGGAAGAGGAAGATAATCTGTGCACTAAAACCCCAATCAGAACTCCTAATTCTGCGGCAAGAGAAAAAGGGACAGTGCCAACAGAGGGTGCGGGACAAAATCCCTCAGAACAAGTGTTTGACTTTACTGACGTATCTCACAACATTGAAAAATCTGGTGCTCCAGAGCAGAATTCTCCATCAGCAGAGAAGAAAAGCAAGCCAAATGTTTCTGTAACCCATGTTCCAGATGAAGGTCTTGTAGATCAAAAGGAAGTGGGTAAATCGTTGGAGCCCACCGGCAACCACGTGCAGAGGAATAGTGAAAGTGTTCCCCCCAAGAGTACATGGATTAAGACTGAAAACACTGGACtattttttagctttttaaaacGCCTTGGAGACATAGGCAAACAGCAGATCAGCAAGGAAACTGCCCACAAGGGCACTGGGTCTGGTGTATAGGCTTTGAAACATGTACAATGTCATGTCAGGGAAGCACATATGACTGCAGTGTTACTTGTAATTAACTTATCATGGTGATGATGTATGTAGTGTTATATTTAATGTTACTTTGTAAATTGATAATGAGGTCGTTAAGAGAAGGAGAGACGGTTTTAGGAAAAGTTGGAGAAGGGAAGGTTGAGGAAAGGCCATTGTGCATGTTgtaccactagatggcagaataTACCAGTAACATGGTAATCTAGCTCAGAAAATATGGGTGGTGTTGATTTCCAGGCAATCTGTGCATTGCCTTGTAAACAAAGAACTGTGGGCCCACACACTGTAAAACGTTTGTCTGATGATAATATTCCCTCATCAGTTGGATACATTACTTACagtgtgttttctttgtctggATTGAGATTGTACAGCCTTGCAGAATGTATTGAGAAAGTCAATGAGCGTGAGAGAATTCAGACTGTGTAAAATCCTGGTTGCTATTTTTGATACTTTGATAAAAGACTACTTGTGCTACTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781336.1 True 3674 mRNA 0.48 13 39892209 39901251

Neighbor

gene id symbol gene type direction distance location
LOC120546381 LOC103363428,LOC101062185,LOC102204297 coding downstream 114289 39759961 ~ 39777920 (-)
LOC120546392 NA coding downstream 135631 39735716 ~ 39756578 (-)
LOC120546526 tuba1c,LOC101079871,LOC107557552,LOC106676044,LOC105935211,LOC101066234 coding downstream 195604 39693607 ~ 39696605 (-)
spartb LOC101480805,LOC102300300,LOC102204879,LOC102787978 coding downstream 201030 39680280 ~ 39691179 (-)
dclk1b NA coding downstream 217907 39639678 ~ 39674302 (-)
LOC120546558 LOC103363424,LOC104943694 coding upstream 2861 39904112 ~ 39912760 (-)
LOC120544420 bach1 coding upstream 326118 40227369 ~ 40260253 (-)
usp16 NA coding upstream 359109 40260360 ~ 40268274 (-)
stoml3a stoml3,LOC104925222,LOC101073007,LOC105935001 coding upstream 923502 40824753 ~ 40832594 (-)
slc25a15a slc25a15,LOC103152068,LOC106945435,LOC103475195 coding upstream 934417 40835668 ~ 40844838 (-)
G22811 LOC104947776 non-coding downstream 24722 39864821 ~ 39867487 (-)
G22818 NA non-coding downstream 34423 39857436 ~ 39857786 (-)
G22816 LOC101479746,LOC102301626,LOC102203644,LOC100692726,LOC102798843 non-coding downstream 37615 39854280 ~ 39854594 (-)
G22815 LOC103363427,LOC100692726,LOC101479746,LOC102798843 non-coding downstream 38604 39853322 ~ 39853605 (-)
G22814 NA non-coding downstream 40973 39851037 ~ 39851236 (-)
G22826 NA non-coding upstream 22962 39924213 ~ 39924451 (-)
LOC120544464 NA non-coding upstream 283496 40184747 ~ 40226319 (-)
G22917 grik1,LOC104963619,LOC107585794,LOC102776120,LOC103378149 non-coding upstream 338081 40239332 ~ 40240348 (-)
G22918 grik1,LOC102307112 non-coding upstream 340332 40241583 ~ 40244030 (-)
G22919 NA non-coding upstream 345970 40247221 ~ 40248092 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 1156386 38727508 ~ 38735823 (-)
robo2 NA other downstream 1243610 38353024 ~ 38648599 (-)
p4ha3 p4ha3 other downstream 2145927 37732841 ~ 37746282 (-)
LOC120571840 LOC103356713,LOC100701072,LOC102300918,LOC101484608,LOC102193268 other downstream 2194070 37692438 ~ 37698139 (-)
si:ch211-105f12.2 LOC103368707,LOC107379995,LOC102080198,LOC107090084 other downstream 2236414 37651459 ~ 37655795 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other upstream 42320 39943571 ~ 40033156 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other upstream 388754 40290005 ~ 40470176 (-)
cntn5 NA other upstream 2128422 42029673 ~ 42167037 (-)
LOC120574039 nlk,nlk2 other upstream 3335431 43236682 ~ 43346673 (-)
LOC120553425 NA other upstream 3799720 43700971 ~ 43716741 (-)

Expression


Co-expression Network