LOC120546526 (tuba1c,LOC101079871,LOC107557552,LOC106676044,LOC105935211,LOC101066234)


Basic Information

Item Value
gene id LOC120546526
gene name tuba1c,LOC101079871,LOC107557552,LOC106676044,LOC105935211,LOC101066234
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 39693607 ~ 39696605 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781486.1
CTTTCCCCATAGTAACGCGCGGACTCGCCTAGCAACACCACGGCACTCCTAAAAGCGCAGCAGGGACGGTTAAATTAGCTAGCCTTACTCAGCTAACATTGCTCTCTTTCAATCCGTTTAAAGCAGCGTCAGGAAACATGCGTGAGTGTATCTCCATCCACGTTGGTCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTTTACTGCCTGGAACATGGGATCCAGCCAGATGGACAGATGCCCAGTGACAAGACTTGTGGAGGAGGAGATGATTCCTTCAACACCTTCTTTAGTGAGACTGGAGCTGGAAAGCACGTCCCCAGAGCAATTTTTGTGGACCTGGAGCCCACTGTTGTCGATGAGGTGCGCACTGGGACCTACCGCCAGCTGTTCCACCCTGAGCAGCTGATCACCGGCAAGGAGGATGCTGCCAACAACTACGCCCGTGGACACTACACCATCGGCAAAGAGATCATCGACCTGGTGCTGGACAGGATCCGCAAACTGGCTGACCAGTGCACCGGCCTTCAGGGCTTCCTGGTTTTCCACAGCTTTGGAGGTGGGACCGGCTCTGGTTTCACCTCCCTGCTGATGGAGCGTCTGTCTGTCGACTATGGCAAGAAGTCCAAGCTGGAATTCTCCATCTACCCAGCTCCCCAGGTGTCCACCGCTGTGGTGGAGCCCTACAACGCCATCCTGACAACCCACACCACCCTGGAGCACTCTGACTGTGCCTTCATGGTGGACAACGAGGCCATCTACGATATCTGCCGTAGGAACCTCGATATCGAGCGTCCTTCTTACACCAACCTGAACAGGTTGATCAGTCAGATTTTGTCCTCCGTCACTGCCTCCCTTCGTTTCGATGGTGCCCTCAATGTTGATCTGACAGAGTTCCAGACCAACTTGGTGCCATATCCCCGTATCCATTTCCCTCTGGCCACCTATGCCCCTGTCATCTCTGCTGAGAAGGCTTACCATGAGCAACTCTCAGTGTCAGAAATCACCAACGCCTGCTTTGAACCAGCCAATCAGTTTGTAAAATGTGACCCTCGCCACGGTAAATACATGGCTTGCTGCCTTTTGTATCGTGGTGATGTGGTGCCCAAAGATGTAAATGCTGCCATTGCCACCATCAAGACCAAGCGCTCCATCCAGTTTGTGGACTGGTGCCCCACTGGTTTCAAGGTGGGCATAAACTACCAGCCACCCACTGTAGTTCCTGGTGGAGACCTGGCCAAGGTCCAGAGGGCTGTGTGCATGCTGAGCAACACCACTGCTATTGCAGAGGCCTGGGCTCGGCTTGACCACAAATTTGATCTGATGTATGCTAAGCGTGCCTTTGTTCACTGGTATGTGGGTGAAGGTATGGAGGAGGGAGAGTTCTCTGAGGCCAGAGAGGACATGGCAGCTCTGGAGAAGGATTATGAGAAGGTTGGAGCTGATAGTTTTGgagatgatggtgatgatgagggAGAGTTATATTAAACAGACATGCATTCCCCTTTATTGA
>XM_039781496.1
CTTTCCCCATAGTAACGCGCGGACTCGCCTAGCAACACCACGGCACTCCTAAAAGCGCAGCAGGGACGGTTAAATTAGCTAGCCTTACTCAGCTAACATTGCTCTCTTTCAATCCGTTTAAAGCAGCGTCAGGAAACATGCGTGAGTGTATCTCCATCCACGTTGGTCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTTTACTGCCTGGAACATGGGATCCAGCCAGATGGACAGATGCCCAGTGACAAGACTTGTGGAGGAGGAGATGATTCCTTCAACACCTTCTTTAGTGAGACTGGAGCTGGAAAGCACGTCCCCAGAGCAATTTTTGTGGACCTGGAGCCCACTGTTGTCGATGAGGTGCGCACTGGGACCTACCGCCAGCTGTTCCACCCTGAGCAGCTGATCACCGGCAAGGAGGATGCTGCCAACAACTACGCCCGTGGACACTACACCATCGGCAAAGAGATCATCGACCTGGTGCTGGACAGGATCCGCAAACTGGCTGACCAGTGCACCGGCCTTCAGGGCTTCCTGGTTTTCCACAGCTTTGGAGGTGGGACCGGCTCTGGTTTCACCTCCCTGCTGATGGAGCGTCTGTCTGTCGACTATGGCAAGAAGTCCAAGCTGGAATTCTCCATCTACCCAGCTCCCCAGGTGTCCACCGCTGTGGTGGAGCCCTACAACGCCATCCTGACAACCCACACCACCCTGGAGCACTCTGACTGTGCCTTCATGGTGGACAACGAGGCCATCTACGATATCTGCCGTAGGAACCTCGATATCGAGCGTCCTTCTTACACCAACCTGAACAGGTTGATCAGTCAGATTTTGTCCTCCGTCACTGCCTCCCTTCGTTTCGATGGTGCCCTCAATGTTGATCTGACAGAGTTCCAGACCAACTTGGTGCCATATCCCCGTATCCATTTCCCTCTGGCCACCTATGCCCCTGTCATCTCTGCTGAGAAGGCTTACCATGAGCAACTCTCAGTGTCAGAAATCACCAACGCCTGCTTTGAACCAGCCAATCAGTTTGTAAAATGTGACCCTCGCCACGGTAAATACATGGCTTGCTGCCTTTTGTATCGTGGTGATGTGGTGCCCAAAGATGTAAATGCTGCCATTGCCACCATCAAGACCAAGCGCTCCATCCAGTTTGTGGACTGGTGCCCCACTGGTTTCAAGGTGGGCATAAACTACCAGCCACCCACTGTAGTTCCTGGTGGAGACCTGGCCAAGGTCCAGAGGGCTGTGTGCATGCTGAGCAACACCACTGCTATTGCAGAGGCCTGGGCTCGGCTTGACCACAAATTTGATCTGATGTATGCTAAGCGTGCCTTTGTTCACTGGTATGTGGGTGAAGGTATGGAGGAGGGAGAGTTCTCTGAGGCCAGAGAGGACATGGCAGCTCTAGAGAAGGATTATGAAGAGGTTGGAGTGGACTCTATTGAgggtgagggagaggaggaaggagaggagtaGGGTCTACTTACTAATAAGTAAATCTAAATTTAAAGTGTCCTTCCTGTACAATATACAGGAGCAcaatgttttgcatttgtttttagaTGTGTACCCTTGTGTTTGAGTAATAAATGTGTCACTGTAGTTGTAAAAAGTTA

Function

symbol description
tuba1c Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in central nervous system; forebrain; nervous system; neurons; and peripheral nervous system. Orthologous to several human genes including TUBA1B (tubulin alpha 1b).

NR:

description
PREDICTED: tubulin alpha chain-like, partial

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781486.1 False 1518 mRNA 0.53 5 39693607 39696605
XM_039781496.1 True 1630 mRNA 0.52 4 39693785 39696605

Neighbor

gene id symbol gene type direction distance location
spartb LOC101480805,LOC102300300,LOC102204879,LOC102787978 coding downstream 2428 39680280 ~ 39691179 (-)
dclk1b NA coding downstream 19305 39639678 ~ 39674302 (-)
mab21l1 mab21l1,LOC103378173 coding downstream 115871 39575415 ~ 39577736 (-)
hdac12 LOC104966765,LOC106921057,LOC100691652 coding downstream 417529 39273254 ~ 39276078 (-)
hmgb1b hmgb1,LOC105030464,LOC106521520,LOC103377997,LOC106612439 coding downstream 682281 39008439 ~ 39011326 (-)
LOC120546392 NA coding upstream 39111 39735716 ~ 39756578 (-)
LOC120546381 LOC103363428,LOC101062185,LOC102204297 coding upstream 63356 39759961 ~ 39777920 (-)
LOC120546419 LOC104923287,LOC104947775,LOC103363426,LOC101479268 coding upstream 171803 39868408 ~ 39901447 (-)
LOC120546408 NA coding upstream 195604 39892209 ~ 39901251 (-)
LOC120546558 LOC103363424,LOC104943694 coding upstream 207507 39904112 ~ 39912760 (-)
G22679 NA non-coding downstream 461753 39227543 ~ 39231854 (-)
G22678 NA non-coding downstream 466204 39226744 ~ 39227403 (-)
G22658 LOC100690850 non-coding downstream 495122 39197174 ~ 39198485 (-)
G22632 NA non-coding downstream 641709 39051210 ~ 39051898 (-)
G22629 NA non-coding downstream 650030 39043089 ~ 39043577 (-)
G22772 NA non-coding upstream 4901 39701506 ~ 39701882 (-)
G22773 NA non-coding upstream 14867 39711472 ~ 39711769 (-)
LOC120546628 NA non-coding upstream 98342 39794947 ~ 39796770 (-)
G22807 LOC104960197,LOC102301626,LOC103363427,LOC101479746 non-coding upstream 102694 39799299 ~ 39801947 (-)
G22812 NA non-coding upstream 137659 39834264 ~ 39834463 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 957784 38727508 ~ 38735823 (-)
robo2 NA other downstream 1045008 38353024 ~ 38648599 (-)
p4ha3 p4ha3 other downstream 1947325 37732841 ~ 37746282 (-)
LOC120571840 LOC103356713,LOC100701072,LOC102300918,LOC101484608,LOC102193268 other downstream 1995468 37692438 ~ 37698139 (-)
si:ch211-105f12.2 LOC103368707,LOC107379995,LOC102080198,LOC107090084 other downstream 2037812 37651459 ~ 37655795 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other upstream 246966 39943571 ~ 40033156 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other upstream 593400 40290005 ~ 40470176 (-)
cntn5 NA other upstream 2333068 42029673 ~ 42167037 (-)
LOC120574039 nlk,nlk2 other upstream 3540077 43236682 ~ 43346673 (-)
LOC120553425 NA other upstream 4004366 43700971 ~ 43716741 (-)

Expression


Co-expression Network