cog6 (cog6,LOC102796367)


Basic Information

Item Value
gene id cog6
gene name cog6,LOC102796367
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 40924025 ~ 40955064 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781913.1
ATGGCTGATACTAAAGTAGAAATTTCAACTGATAGCACCACTGTAACACAGAACGCAAATGCGGCATCTCAACCCAATAACCCGCTGTCACGGAAGCTTAACAAAATACTGGAGACGAGGCTTGACAATGACAAGGAGATGCTGGAGGCTCTGAAGGCGCTCTCTGTGTTCTTCACCGAAAACAGTTTGCGCACGAGGAGAAATCTTCGCGGTGACATTGAGAGACGAAGCCTTTCGATCAACGAGGAGTTTGCACGAATATTTAAGGACGTAAAAGAGGAGCTTGAAAGTGTTCATGAGGATGTCCAGGCCATGAGCACATGTTGTGAAGAAATGACCAATAGATTAAAGGCTGCGAAGGAGCAAACTCAAGACCTCATAGTAAAAACCAACAAGCTGCAGGGAGAAAATCACCGCCTGGAGGTGAGAGCTCAGGTTGCTCAGGCTTTCCTTGCCAAGTTCCAGCTGTCTAATGAGGAGATGTCCACACTGCGAGGGGCTCGGGATGCACCCATTACTGAGGATTTCTTCAAAGCTCTCAGACGAGTGAAGCACATCCACGAGGATGTGAAAATCCTCTTGCGAACCAACCAGCAAACTGCGGGGTTAGAGATCATGGAGCAGATGGCCGTGTTACAGGAGACCTCTTATGAGCAGCTCTACCGCTGGGCTCAGAATGAATGCAGAGGACTGACCCAAGAGACCTGTGATATCTGCCCTGTGTTGACTCAAGCCATGGAAGCCTTACAAGACCGACCTGTCCTTTacaaGTACACTCTGGATGAGTTTGGGACTGCGCGCAGGAGTGCGGTGGTCCGAGGCTTCATCGACGCCCTCACCCGCGGCGGGCTGGGAGGGACTCCCCGCCCCATAGAGATGCATTCACATGACCCTATGAGGTATGTTGGGGACATGCTGGCCTGGCTGCACCAAGCCACCGCGTCGGAGAAAGAGCACCTAGAAGCTCTGCTGAAACAAGTCACTCTGCAAGATGTGGATGAGAACATGAAGGAGGTGGTTGGACACATCACTGAGGGAGTCTGCAGACCACTGAAAGTTCGGATAGAACAGGTCATTGTGGCTGAGCCTGGTGCTGTGCTGCTTTACAAGCTGTCCAACCTTCTCAAGTTCTACCACCACACCATCAGCTCCATCATTGGGACCAGTGTGGCCTCATTGCTCATCACTATTGAAGAAATGCACATCCTCAGCAAAAAGATGTTCTTCAACAGCCTGAGCCTTCATGCAAGCAGACTCATGGACAAGGTGGAGCTACCGCCTGCAGACCTGGGACCTACAGCCTCCCTCACTCAGACACTCTCCCTCCTCAGGGAGGTGCTGGCCTCCCATGACTCGTCAGTGGTTCCCCTGGATGCCCGCCAGGCTGACTTTGCTCAGGTGCTCTCCTGCATCTTGGATCCCCTCCTACAGTTATGCACTGTGTCTGCCAGTAACCTCGGCACTGCTGACATGGCTACCTACATGGTCAACTCGTTGTATGTCATGAAGACGACCCTGGCTCTCTTTGAGTTCACTGACAAGAGGCTTGAGATGCTCGAGTTCCAGATCGAGGCTCACCTTGACACTCTGATCAACGAGCAGGCTTCCTACGTGCTGACCAGGGCCGGACTGAGTTACATCTACAGCTGTGTCCAGAACACTGAGCAGgGTCCTCTATCCCTCCTCCCCAGCATGGACAGCTCTTCTGTGAAAGCAGCCATGGTCCAGTTCGATCGGTACTTGTCATCGCCAGACACTCTTGTGATGCCACAGCTCAACTTCCTGCTCAGTGCAGCCATCAAGGAGCAGATCTTCCGTCAATCCACAGAGCTGGTGTGCAGAGCCTATGGGGAGGTTTACAGCGCGCTGACCAGCCCAGCTAACGGCTACAAAGACCCCGAGAACCTGCTACCCCGATCACCTCAGCAGGTCCAGGCCTTGCTGTCCTGAGAGACACTTCTGTCATACCTGGTTGATCTCAAAAACACGAGGTGAGCCCCAGCGAAGGACAGCCTGCAGGTTATTTAAAGAGCTGTGTAATTTGTACAGCACAATACCACAAATGTATATAAAAGTAGTTGTTAAGGTGCGGTTCTTTGTGGGAAATGGGGTCTGTGGGTCGCTGACCTCAGAGAGAGACACTCCTGGAGGAAAGAACATTATATGAATATGATCCATTTACTTTCACTGCTGCAGAACGTCgacttgtttttctctctgtaaagcacatttccttttttctgtcTGATTTACCACCATGTACTCTACCATGTCCATAATTGTACAaaacaatgtctttttttttatgaaaacacTGAACATTATATAAATCAAAAGGATGCACTTAATTTTTAA

Function

symbol description
cog6 Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIl. Orthologous to human COG6 (component of oligomeric golgi complex 6).

NR:

description
component of oligomeric golgi complex 6

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
K20293 COG6, COD2; conserved oligomeric Golgi complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781913.1 True 2355 mRNA 0.50 19 40924025 40955064

Neighbor

gene id symbol gene type direction distance location
slc25a15a slc25a15,LOC103152068,LOC106945435,LOC103475195 coding downstream 79187 40835668 ~ 40844838 (-)
stoml3a stoml3,LOC104925222,LOC101073007,LOC105935001 coding downstream 91431 40824753 ~ 40832594 (-)
usp16 NA coding downstream 655751 40260360 ~ 40268274 (-)
LOC120544420 bach1 coding downstream 663772 40227369 ~ 40260253 (-)
LOC120546558 LOC103363424,LOC104943694 coding downstream 1011265 39904112 ~ 39912760 (-)
trnak-uuu_7 NA coding upstream 76742 41031806 ~ 41031878 (-)
lpar6a lpar6,LOC104952799,LOC101069375,LOC103363548 coding upstream 161614 41116678 ~ 41119295 (-)
rcbtb2 rcbtb2,LOC100697269 coding upstream 177623 41132687 ~ 41149107 (-)
ndufc2 ndufc2,LOC101465984,LOC102192131,LOC100708544 coding upstream 320943 41276007 ~ 41278704 (-)
yap1 yap1 coding upstream 840289 41795353 ~ 41827949 (-)
G23015 NA non-coding downstream 148101 40771887 ~ 40775924 (-)
G23014 NA non-coding downstream 154044 40769741 ~ 40769981 (-)
G23013 NA non-coding downstream 154900 40768918 ~ 40769125 (-)
G23012 zgc:63694,LOC108410642,LOC107752277,LOC107699226,LOC107555275 non-coding downstream 157957 40765851 ~ 40766068 (-)
G23011 NA non-coding downstream 160020 40762024 ~ 40764005 (-)
G23069 NA non-coding upstream 61582 41016646 ~ 41017064 (-)
G23127 NA non-coding upstream 215620 41170684 ~ 41222462 (-)
G23130 fndc3a non-coding upstream 241629 41196693 ~ 41198970 (-)
G23141 NA non-coding upstream 300310 41255374 ~ 41257366 (-)
G23151 NA non-coding upstream 336641 41291705 ~ 41291910 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other downstream 453849 40290005 ~ 40470176 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other downstream 890869 39943571 ~ 40033156 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 2188202 38727508 ~ 38735823 (-)
robo2 NA other downstream 2275426 38353024 ~ 38648599 (-)
p4ha3 p4ha3 other downstream 3177743 37732841 ~ 37746282 (-)
cntn5 NA other upstream 1074609 42029673 ~ 42167037 (-)
LOC120574039 nlk,nlk2 other upstream 2281618 43236682 ~ 43346673 (-)
LOC120553425 NA other upstream 2745907 43700971 ~ 43716741 (-)
smco4 NA other upstream 2815002 43770066 ~ 43789435 (-)
mrps23 mrps23 other upstream 3861564 44816628 ~ 44824993 (-)

Expression


Co-expression Network