cfap45


Basic Information

Item Value
gene id cfap45
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 23278602 ~ 23283802 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782018.1
TGTCGCAAAGTTGTCAAGTTTATGAGTATGATAGCGACATTTAGATATAACAAAACATTTAGCTCGTATTATTAGTCTTTGGAACTTGTTAACAATAAACTAGAAACGTTAGCGTttagactagctagctagctaaaacaTTAATTTATTCTCCTTTGCTCTGGGCACCAATAACCGCGGACCATGAGACTGGCATCCAGCTCCACGAGTTCAAGGAGCAGCTCGGACACCCGCCGGTACCGCATGCGAGCCCCAACCTCTCAGGTGGATGAAACCCTGTTTGGGAGCCAGAAACCGATATCATCACCGCTAGACATACGTGGAAACTCAGCCTCCAAGGCCAAGAATCCGTCCCAAAAGAACCAAGAAGGAGAGACTGTTGTTCAAATCGTCACCAAGGACCTCATTCGCAATCTCAGGATCCCATTTAAGGATCCTTCAGGAGAGTCCATTATTCTACCATCAGCTGAGTTTGAGCGGATCGCCTCAACGTCCCGGGTTGTCACCAAGGAGCAGAGGGAGGCCCTGAGGGAGGCTTatcacagaaagaaagaagaggaaattaatgctgcagagGAAAGGAAGCGTCAAATATATGAGGCAGACTTGTCCCGTAAGGAGAACCAGGCACTGACGGAGCTGGAGCGCGAGGCCCGGGACCGTGCTCAGCGCTTAGTGGAGCGGGCCAACGCCTTAAAGATGGAGCAAGAGGATGAGATCAAAAAGCTCAACAACCTGATTATGGGTGCTCAGTGTCAAGCCACTCGTGACACCCAGATCCAGGAGAAGAAACAGATCCAGGCAGAGTTGTCAGAGGAGGAGAAGCGTCTGGATGCCATGATGGAAGTGGAGCGCCGCAAGGCCTTGGAGACCGTGGAGCAGATTGATGAGCTGCGCAAACAGCAGAGGATCGGGGGAATGCAGAAAATCTACAACCAGATCCGGCAACATTTGGAGGAGAAGCAAGTGCAAGAAGTGatgaaagagatggagagacagcAGATACGAGAGAACCAAGAGAAAATGAACCTGGAAGACCTGAAGGCCCTAGAGAAGAAGAGGGACGAGCAGCAGCGTCTGTTGGAAGAGATCAAGTGTATCAACAGAGAGACTTTGCAGGCCAAGGAGCAgcggagagaggaggagaagctgGCTGACATGAGAGATTTGGAATACATACGGAAGAAAATGGAGCGAGAGGCAGAATATGAAGCAGAGCAGAGACGAATCAAGAAAGAGAAGGAGTTGGAGATTGCCAGGCTGAGGGCCcgtcaagaaaaagaaaaagactacAAGGCAGAGCAGGATGAGCTCCGTGCCCGGAGGAATCAAGAAATCGCAGACAGAGAATGGAGGAGAAAACAGAAAGAGCTTGGTGAAAAGAAAGCGAAGGAGGAAGCGATGCTGAGGGCGGCTCGCTTGGAGCAGGTTCACGGGAAAGAGCACTTCCTGTCGATCGAGGCTGGCCGGGAGAAGGCAGAGTTTGAGAGACTGCTGAAGGTGCAACAGGAAGCAATCATCAaacagaaggaggaggaggagaggcagcGTCAGAAAGCACACCGCCACGCAGAGGTAATCCGAAATCAGGTGAAGGAGCGTGAACTCTCAGCCGTAGCCAAGCGCAGAGAGATCTTCAAGGAGGCCGATCGGTTGATCGAGGATGCCCGGCAGAGGCGCGCGCGCCTCGATGAGATCAAAGAGAAGAAGCTGAAGGAGCTCAAGGCTACAGGACTCTCTGAACAGTACTGCAGTGAAGTGGAAAGGAAGGCCCGGGCCTGCGTACTCTAATTCACTCACTACTGGATTCAAATGGTGCGAAGGCATCCCATTTTCTGTGGTCTCATTTAAGCAGAAAGAACACGTTTCAAGTACTAATGTAACTTGAACATATATAAGAATGTACCAATAAAAGGTTTCTACTG
>XM_039782027.1
AATAaatatctaaataaataacgTTACACAAGTTAGTAACAGAAATGTTGAACCAAAAAGTTTCAATGTAACGTGTATACTTAGTGTAGCTAGCTAAGTGTTAAACTTCCGCCTgcaaagtaacgttagctagctagctcttgaAAATCAATGCGGGTTACAGTCTGTGGTTACAAAGCACAACGTTACTAACGTCAGCTTAAAGGAGCACTAATAGACTGGCATCCAGCTCCACGAGTTCAAGGAGCAGCTCGGACACCCGCCGGTACCGCATGCGAGCCCCAACCTCTCAGGTGGATGAAACCCTGTTTGGGAGCCAGAAACCGATATCATCACCGCTAGACATACGTGGAAACTCAGCCTCCAAGGCCAAGAATCCGTCCCAAAAGAACCAAGAAGGAGAGACTGTTGTTCAAATCGTCACCAAGGACCTCATTCGCAATCTCAGGATCCCATTTAAGGATCCTTCAGGAGAGTCCATTATTCTACCATCAGCTGAGTTTGAGCGGATCGCCTCAACGTCCCGGGTTGTCACCAAGGAGCAGAGGGAGGCCCTGAGGGAGGCTTatcacagaaagaaagaagaggaaattaatgctgcagagGAAAGGAAGCGTCAAATATATGAGGCAGACTTGTCCCGTAAGGAGAACCAGGCACTGACGGAGCTGGAGCGCGAGGCCCGGGACCGTGCTCAGCGCTTAGTGGAGCGGGCCAACGCCTTAAAGATGGAGCAAGAGGATGAGATCAAAAAGCTCAACAACCTGATTATGGGTGCTCAGTGTCAAGCCACTCGTGACACCCAGATCCAGGAGAAGAAACAGATCCAGGCAGAGTTGTCAGAGGAGGAGAAGCGTCTGGATGCCATGATGGAAGTGGAGCGCCGCAAGGCCTTGGAGACCGTGGAGCAGATTGATGAGCTGCGCAAACAGCAGAGGATCGGGGGAATGCAGAAAATCTACAACCAGATCCGGCAACATTTGGAGGAGAAGCAAGTGCAAGAAGTGatgaaagagatggagagacagcAGATACGAGAGAACCAAGAGAAAATGAACCTGGAAGACCTGAAGGCCCTAGAGAAGAAGAGGGACGAGCAGCAGCGTCTGTTGGAAGAGATCAAGTGTATCAACAGAGAGACTTTGCAGGCCAAGGAGCAgcggagagaggaggagaagctgGCTGACATGAGAGATTTGGAATACATACGGAAGAAAATGGAGCGAGAGGCAGAATATGAAGCAGAGCAGAGACGAATCAAGAAAGAGAAGGAGTTGGAGATTGCCAGGCTGAGGGCCcgtcaagaaaaagaaaaagactacAAGGCAGAGCAGGATGAGCTCCGTGCCCGGAGGAATCAAGAAATCGCAGACAGAGAATGGAGGAGAAAACAGAAAGAGCTTGGTGAAAAGAAAGCGAAGGAGGAAGCGATGCTGAGGGCGGCTCGCTTGGAGCAGGTTCACGGGAAAGAGCACTTCCTGTCGATCGAGGCTGGCCGGGAGAAGGCAGAGTTTGAGAGACTGCTGAAGGTGCAACAGGAAGCAATCATCAaacagaaggaggaggaggagaggcagcGTCAGAAAGCACACCGCCACGCAGAGGTAATCCGAAATCAGGTGAAGGAGCGTGAACTCTCAGCCGTAGCCAAGCGCAGAGAGATCTTCAAGGAGGCCGATCGGTTGATCGAGGATGCCCGGCAGAGGCGCGCGCGCCTCGATGAGATCAAAGAGAAGAAGCTGAAGGAGCTCAAGGCTACAGGACTCTCTGAACAGTACTGCAGTGAAGTGGAAAGGAAGGCCCGGGCCTGCGTACTCTAATTCACTCACTACTGGATTCAAATGGTGCGAAGGCATCCCATTTTCTGTGGTCTCATTTAAGCAGAAAGAACACGTTTCAAGTACTAATGTAACTTGAACATATATAAGAATGTACCAATAAAAGGTTTCTACTGC

Function

NR:

description
cilia- and flagella-associated protein 45

GO: NA

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782018.1 False 1925 mRNA 0.50 12 23278603 23283179
XM_039782027.1 True 1955 mRNA 0.50 12 23278602 23283802

Neighbor

gene id symbol gene type direction distance location
lbhl LOC102301737,LOC102196385,LOC100690809,LOC103154600,LOC108238121,LOC106945137 coding downstream 109395 23162202 ~ 23169207 (-)
LOC120546095 NA coding downstream 116524 23159296 ~ 23162078 (-)
rbm7 rbm7,LOC104959492 coding downstream 396149 22875065 ~ 22882453 (-)
barx2 barx2 coding downstream 407012 22860951 ~ 22871590 (-)
LOC120551448 NA coding downstream 479590 22789044 ~ 22799012 (-)
trappc4 trappc4 coding upstream 5594 23289396 ~ 23291463 (-)
sacs sacs coding upstream 31256 23315058 ~ 23341092 (-)
LOC120554161 mipep coding upstream 93292 23377094 ~ 23409078 (-)
brwd1 NA coding upstream 126018 23409820 ~ 23446831 (-)
LOC120553253 NA coding upstream 165349 23449151 ~ 23452418 (-)
G18943 NA non-coding downstream 41756 23233513 ~ 23236846 (-)
LOC120546850 NA non-coding downstream 44056 23216766 ~ 23234546 (-)
G18923 NA non-coding downstream 82258 23195668 ~ 23196344 (-)
G18911 polr2i,rpb9 non-coding downstream 98019 23178636 ~ 23180583 (-)
G18905 NA non-coding downstream 102888 23175464 ~ 23175714 (-)
G18963 rps25 non-coding upstream 7939 23291741 ~ 23294502 (-)
G19018 NA non-coding upstream 63635 23347437 ~ 23351424 (-)
G19033 NA non-coding upstream 181161 23464963 ~ 23471724 (-)
G19045 NA non-coding upstream 281201 23565003 ~ 23565242 (-)
G19126 NA non-coding upstream 501436 23785238 ~ 23787687 (-)
G18948 LOC103474743 other downstream 26182 23246603 ~ 23252420 (-)
G18885 gramd1b other downstream 130087 23139213 ~ 23148515 (-)
LOC120551419 LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978 other downstream 1271427 21983302 ~ 22007175 (-)
gdpd5b gdpd5,LOC103357216 other downstream 1568239 21664076 ~ 21710363 (-)
LOC120572205 NA other downstream 1663356 21610814 ~ 21615246 (-)
LOC120574680 NA other upstream 169745 23453547 ~ 23461044 (-)
atm atm,LOC102794456 other upstream 445686 23729488 ~ 23758826 (-)
slc33a1 slc33a1 other upstream 518713 23802515 ~ 23809452 (-)
G19140 gmps,LOC102797084 other upstream 540019 23823821 ~ 23827954 (-)
G19270 ptx3 other upstream 964229 24248031 ~ 24252913 (-)

Expression


Co-expression Network