Gene
RNA
| Item | Value |
|---|---|
| gene id | trappc4 |
| gene name | trappc4 |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053113.1 |
| NCBI id | CM020910.1 |
| chromosome length | 48524041 |
| location | 23289396 ~ 23291463 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| trappc4 | Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of TRAPP complex. Orthologous to human TRAPPC4 (trafficking protein particle complex subunit 4). |
| description |
|---|
| trafficking protein particle complex subunit 4 |
| id | name | namespace |
|---|---|---|
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | biological_process |
| GO:0005801 | cis-Golgi network | cellular_component |
| id | description |
|---|---|
| K20303 | TRAPPC4, TRS23; trafficking protein particle complex subunit 4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039782060.1 | True | 901 | mRNA | 0.44 | 5 | 23289396 | 23291463 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cfap45 | NA | coding | downstream | 5594 | 23278602 ~ 23283802 (-) |
| lbhl | LOC102301737,LOC102196385,LOC100690809,LOC103154600,LOC108238121,LOC106945137 | coding | downstream | 120189 | 23162202 ~ 23169207 (-) |
| LOC120546095 | NA | coding | downstream | 127318 | 23159296 ~ 23162078 (-) |
| rbm7 | rbm7,LOC104959492 | coding | downstream | 406943 | 22875065 ~ 22882453 (-) |
| barx2 | barx2 | coding | downstream | 417806 | 22860951 ~ 22871590 (-) |
| sacs | sacs | coding | upstream | 23595 | 23315058 ~ 23341092 (-) |
| LOC120554161 | mipep | coding | upstream | 85631 | 23377094 ~ 23409078 (-) |
| brwd1 | NA | coding | upstream | 118357 | 23409820 ~ 23446831 (-) |
| LOC120553253 | NA | coding | upstream | 157688 | 23449151 ~ 23452418 (-) |
| dscamb | dscam,LOC103377590 | coding | upstream | 283237 | 23574700 ~ 23693377 (-) |
| G18943 | NA | non-coding | downstream | 52550 | 23233513 ~ 23236846 (-) |
| LOC120546850 | NA | non-coding | downstream | 54850 | 23216766 ~ 23234546 (-) |
| G18923 | NA | non-coding | downstream | 93052 | 23195668 ~ 23196344 (-) |
| G18911 | polr2i,rpb9 | non-coding | downstream | 108813 | 23178636 ~ 23180583 (-) |
| G18905 | NA | non-coding | downstream | 113682 | 23175464 ~ 23175714 (-) |
| G18963 | rps25 | non-coding | upstream | 278 | 23291741 ~ 23294502 (-) |
| G19018 | NA | non-coding | upstream | 55974 | 23347437 ~ 23351424 (-) |
| G19033 | NA | non-coding | upstream | 173500 | 23464963 ~ 23471724 (-) |
| G19045 | NA | non-coding | upstream | 273540 | 23565003 ~ 23565242 (-) |
| G19126 | NA | non-coding | upstream | 493775 | 23785238 ~ 23787687 (-) |
| G18948 | LOC103474743 | other | downstream | 36976 | 23246603 ~ 23252420 (-) |
| G18885 | gramd1b | other | downstream | 140881 | 23139213 ~ 23148515 (-) |
| LOC120551419 | LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978 | other | downstream | 1282221 | 21983302 ~ 22007175 (-) |
| gdpd5b | gdpd5,LOC103357216 | other | downstream | 1579033 | 21664076 ~ 21710363 (-) |
| LOC120572205 | NA | other | downstream | 1674150 | 21610814 ~ 21615246 (-) |
| LOC120574680 | NA | other | upstream | 162084 | 23453547 ~ 23461044 (-) |
| atm | atm,LOC102794456 | other | upstream | 438025 | 23729488 ~ 23758826 (-) |
| slc33a1 | slc33a1 | other | upstream | 511052 | 23802515 ~ 23809452 (-) |
| G19140 | gmps,LOC102797084 | other | upstream | 532358 | 23823821 ~ 23827954 (-) |
| G19270 | ptx3 | other | upstream | 956568 | 24248031 ~ 24252913 (-) |
