LOC120547251


Basic Information

Item Value
gene id LOC120547251
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13556280 ~ 13567554 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782766.1
CTTTACCTTTTATTCTACTTTCATTTCCGGAATCGATGGCGCTAACCAGAGCCCATCTACGGGTTAGAAATGCttccttattagaaattctctgGCGCTAACGCTCCTGTTGTTTATCGCCGATCTCTTTATACATCCAGGATTTATTAACGCTGTTGTAAGAGTCTGCGGAGgtagaaatgtcagaaaagttaGTGTTTTACTCAGAAACAAAGTCCATCATGGAGACCGTCGTTAAGACCGCTCTTGTTGTCGGAAATTCAAAAGAACAATCCACGAAGACGCCAAATGTAAGCCGTGAGCCGGACTTTGACAGCCTTGTGGAAATGTTGACTCGGGAGGCAACGAGAAAGATCAGCGCCGTTTTCTCTGAACTCTCCTCAATGCTGCACAACGAAAACCATACTCTCAAGATCAAAGTTTGGCATCTGGAGAGCGTGCTGAAGACTATGactgaaaactttgaaaatgccAGGAGGTGGAGAGAAAATGTCCTGAACGGCTGCCCGGTCCTGTTGGAGCAGAGCGGGTTGATCTACACCCTGAAGCCTTTTGGGAAGTTAAAAAGAAAGACCGATACATTACCAGAGGGAGTCGCACAAACAGCGCCTGCTGCTGAGATGGAGAGTGGACATGATGCTGATGGTGGAGAGGCAACGAAGGAGGTGAACTCTGAAGCTGAGTCCTCATCAGCCAGTAAAAAAGACACTGCAGATGATTGTACCACAACAAACACGGCAGAATCCAAAAACGCAGACCGCcaaaacacacaggaagcagAAGTCACAAGGAAAGGGAAGTTGTTTGTATGTCATATGTGTAACAAGAGCTTCAACCGGCAGTTTCACCTGACGAAGCACATGAACACTCACAAAGACCAGAGGCCTTTCGCCTGCGACCAGTGCCCGCGAAAATTCAGGGACACGGCGACTTTTGAGTACCACCTGCTGCGGCACGAGGAGAAGAAGTACGCTACCTTCAAGTGCCAGCTCTGTGAGAAGACTTTCAAGACAAAAATGTGCCTGAAGACTCACCAGCTCGCGCACACAGACACGAGGCCGTTCACCTGCTCCACCTGTGGGAAGGCcttcaaaactaaaaacaacCTGCAGGCTCACCAGGTCGTGCACAGTGTTGAAAAGCCGCACAAATGCTCCGAGTGCGGGGAGAGTTTCCGGTACGCGTTCACGCTGCAGTGCCATAAAAGCGCACACACTGGTGAAAATCCTTACAAATGCACGGTGTGTGGCAAAGCTTTTATAAAGAGGAGGTCGCTCAGGACGCACCAGTCGGTCCACCGAGGGAAAATGTTCACGTGCGAGACGTGTGGAGCGGGCTTCACCATGCAACAAAACCTGAAGAGACACATTCGTATTCACACAGGCGAAAAGCCGTTCAGATGTAAAGTCTGCGGGGAGAGTTTCATTCAGGAAAACCGGCTGAAAGTCCACATGCTCGTTCACGGTGCCTCAAAGTCGTTCATGTGCGACCTGTGCGGAAAGACTTTTCTTTACAACTGCCATCTGCAGAGACACCAGAAAGCAACCCACGACGAAAGGCACGGGCAGGTCGTCCGACGGCGAACTCGCGAGCGGGGGAACCGGCGAGTTATCTATCGCCGGGACAAGACGATCGTAGACGTGACGCCGTTCAGCTGCAAGACCTGCCGCAAGAGTTTCGACAGCGCGAGTGTGCTGAGAAGACACGAGCTCATTCACGCGGGCCAGACGCAGTACAACTGCGACGCGTGCGGCAGGTCGTTTTTCTACAAAGTGACGTTCGACTACCATCGGCGAATCCACTCGGGGGAACGGCCGTTCGGTTGCGACGTGTGCGGGAAGAGGTTCATCATCCATCAGGCTCTCAAGTCCCACCAACTGCAGCACACTGGAGAGAAACCGCATAAATGCGAGCATTGCGGCAAGGCCTTCAGGCTCTACGCAAACTACCTCCGACACCTGCGGGTGCACACGGGGGAGAAGCCCTACGAGTGCGAAGTTTGCGGCGTGAGGTTCAGGCAGCTCGGACACGTGAAGTTTCACATGCaggtccacacaggagagaggcCGTACTCCTGCAGCAGCTGCGGACTCGGATTTTCAGACTCGAGGCTGCTCAAGAAACACAACTGTGCTGAGAAACGCCGGACGCTGTTGGGGAACACGCTCTCTACGCCCTGAAGCTGAGCACCTGGCGATTAGTAATGGCAACGCAGCGGTGATTTCGTTGGATTCGCACCTGTGGAAGCTCGTAAATGTTGTTTCCTGTCAGGACAAAACGCCCAGTCCTGATACGTACTGGGTATCTGAAGAACGACTGTTTCATAGTTTAGTCACttgtgtttattttgaaagtaaCTGACGGAAGTAATTCCTATGTTTTCATGTCTGACTTGATGTTTTGTGGTAATTTAGTTCCTCTTTTGACCACTGGAGGGTAGTAAAGGACTATGTATTACTACTACTTACACTATTGAAATCACTTCAAACAAAGCTCAGAATACCCTAATTGATACCTCCTAAAGAATATTGATAATAATCCGGTGCAAGAGAAACATCTTACTTCGATGTACTTGTATTGGTGTTACTTGTACTTGTATTGATTTGCGGGCGGCTGAGGCTCAGGGGGTCGTTCTTTAATCACACGTTTTGGAGGTTTAATCCTCTCCGCTTGTCGGCGTGTCCTCTGAGCTAGACCGTGAAGCCCAAGTTTCTcccgtatgaatgtgtgcgtTTGCTTTGCCATTAAACAAGTTCAGGACTTTTAGGACTA
>XM_039782773.1
ggCTTTACCTTTTATTCTACTTTCATTTCCGGAATCGATGGCGCTAACCAGAGCCCATCTACGGGTTAGAAATGCttccttattagaaattctctgGCGCTAACGCTCCTGTTGTTTATCGCCGATCTCTTTATACATCCAGGATTTATTAACGCTGTTGTAAGAGTCTGCGGAGgtagaaatgtcagaaaagttaGTGTTTTACTCAGAAACAAAGTCCATCATGGAGACCGTCGTTAAGACCGCTCTTGTTGTCGGAAATTCAAAAGAACAATCCACGAAGACGCCAAATCCGGACTTTGACAGCCTTGTGGAAATGTTGACTCGGGAGGCAACGAGAAAGATCAGCGCCGTTTTCTCTGAACTCTCCTCAATGCTGCACAACGAAAACCATACTCTCAAGATCAAAGTTTGGCATCTGGAGAGCGTGCTGAAGACTATGactgaaaactttgaaaatgccAGGAGGTGGAGAGAAAATGTCCTGAACGGCTGCCCGGTCCTGTTGGAGCAGAGCGGGTTGATCTACACCCTGAAGCCTTTTGGGAAGTTAAAAAGAAAGACCGATACATTACCAGAGGGAGTCGCACAAACAGCGCCTGCTGCTGAGATGGAGAGTGGACATGATGCTGATGGTGGAGAGGCAACGAAGGAGGTGAACTCTGAAGCTGAGTCCTCATCAGCCAGTAAAAAAGACACTGCAGATGATTGTACCACAACAAACACGGCAGAATCCAAAAACGCAGACCGCcaaaacacacaggaagcagAAGTCACAAGGAAAGGGAAGTTGTTTGTATGTCATATGTGTAACAAGAGCTTCAACCGGCAGTTTCACCTGACGAAGCACATGAACACTCACAAAGACCAGAGGCCTTTCGCCTGCGACCAGTGCCCGCGAAAATTCAGGGACACGGCGACTTTTGAGTACCACCTGCTGCGGCACGAGGAGAAGAAGTACGCTACCTTCAAGTGCCAGCTCTGTGAGAAGACTTTCAAGACAAAAATGTGCCTGAAGACTCACCAGCTCGCGCACACAGACACGAGGCCGTTCACCTGCTCCACCTGTGGGAAGGCcttcaaaactaaaaacaacCTGCAGGCTCACCAGGTCGTGCACAGTGTTGAAAAGCCGCACAAATGCTCCGAGTGCGGGGAGAGTTTCCGGTACGCGTTCACGCTGCAGTGCCATAAAAGCGCACACACTGGTGAAAATCCTTACAAATGCACGGTGTGTGGCAAAGCTTTTATAAAGAGGAGGTCGCTCAGGACGCACCAGTCGGTCCACCGAGGGAAAATGTTCACGTGCGAGACGTGTGGAGCGGGCTTCACCATGCAACAAAACCTGAAGAGACACATTCGTATTCACACAGGCGAAAAGCCGTTCAGATGTAAAGTCTGCGGGGAGAGTTTCATTCAGGAAAACCGGCTGAAAGTCCACATGCTCGTTCACGGTGCCTCAAAGTCGTTCATGTGCGACCTGTGCGGAAAGACTTTTCTTTACAACTGCCATCTGCAGAGACACCAGAAAGCAACCCACGACGAAAGGCACGGGCAGGTCGTCCGACGGCGAACTCGCGAGCGGGGGAACCGGCGAGTTATCTATCGCCGGGACAAGACGATCGTAGACGTGACGCCGTTCAGCTGCAAGACCTGCCGCAAGAGTTTCGACAGCGCGAGTGTGCTGAGAAGACACGAGCTCATTCACGCGGGCCAGACGCAGTACAACTGCGACGCGTGCGGCAGGTCGTTTTTCTACAAAGTGACGTTCGACTACCATCGGCGAATCCACTCGGGGGAACGGCCGTTCGGTTGCGACGTGTGCGGGAAGAGGTTCATCATCCATCAGGCTCTCAAGTCCCACCAACTGCAGCACACTGGAGAGAAACCGCATAAATGCGAGCATTGCGGCAAGGCCTTCAGGCTCTACGCAAACTACCTCCGACACCTGCGGGTGCACACGGGGGAGAAGCCCTACGAGTGCGAAGTTTGCGGCGTGAGGTTCAGGCAGCTCGGACACGTGAAGTTTCACATGCaggtccacacaggagagaggcCGTACTCCTGCAGCAGCTGCGGACTCGGATTTTCAGACTCGAGGCTGCTCAAGAAACACAACTGTGCTGAGAAACGCCGGACGCTGTTGGGGAACACGCTCTCTACGCCCTGAAGCTGAGCACCTGGCGATTAGTAATGGCAACGCAGCGGTGATTTCGTTGGATTCGCACCTGTGGAAGCTCGTAAATGTTGTTTCCTGTCAGGACAAAACGCCCAGTCCTGATACGTACTGGGTATCTGAAGAACGACTGTTTCATAGTTTAGTCACttgtgtttattttgaaagtaaCTGACGGAAGTAATTCCTATGTTTTCATGTCTGACTTGATGTTTTGTGGTAATTTAGTTCCTCTTTTGACCACTGGAGGGTAGTAAAGGACTATGTATTACTACTACTTACACTATTGAAATCACTTCAAACAAAGCTCAGAATACCCTAATTGATACCTCCTAAAGAATATTGATAATAATCCGGTGCAAGAGAAACATCTTACTTCGATGTACTTGTATTGGTGTTACTTGTACTTGTATTGATTTGCGGGCGGCTGAGGCTCAGGGGGTCGTTCTTTAATCACACGTTTTGGAGGTTTAATCCTCTCCGCTTGTCGGCGTGTCCTCTGAGCTAGACCGTGAAGCCCAAGTTTCTcccgtatgaatgtgtgcgtTTGCTTTGCCATTAAACAAGTTCAGGACTTTTAGGACTA

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006399 tRNA metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0008033 tRNA processing biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03410 Base excision repair
ko03430 Mismatch repair
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782766.1 True 2772 mRNA 0.50 4 13556280 13567552
XM_039782773.1 False 2762 mRNA 0.50 4 13556280 13567554

Neighbor

gene id symbol gene type direction distance location
LOC120547238 LOC102785257,LOC103373880,LOC104952507,LOC105417105 coding downstream 411 13541742 ~ 13555869 (-)
mark4b mark4,LOC107094871,LOC103373878 coding downstream 26173 13465012 ~ 13530107 (-)
klc3 LOC104964758,LOC103368325 coding downstream 110279 13418951 ~ 13446001 (-)
pak4 LOC103368331 coding downstream 345754 13170383 ~ 13210526 (-)
zgc:152863 LOC103368334,LOC104955327 coding downstream 394322 13145662 ~ 13161958 (-)
LOC120574245 NA coding upstream 1290 13568844 ~ 13574504 (-)
LOC120574254 sptbn4 coding upstream 8539 13576093 ~ 13694036 (-)
kcnk6 kcnk6,LOC104944303 coding upstream 152333 13719887 ~ 13737393 (-)
prx NA coding upstream 197990 13765544 ~ 13811769 (-)
pld3 pld3,LOC103364087 coding upstream 258362 13825916 ~ 13838806 (-)
G16751 NA non-coding downstream 157960 13396210 ~ 13398320 (-)
G16737 NA non-coding downstream 196061 13318063 ~ 13360219 (-)
G16716 NA non-coding downstream 300400 13254343 ~ 13255880 (-)
G16709 NA non-coding downstream 390686 13164817 ~ 13165594 (-)
G16706 LOC101165163 non-coding downstream 430618 13123719 ~ 13125662 (-)
G16882 NA non-coding upstream 200345 13767899 ~ 13770080 (-)
G16888 NA non-coding upstream 337650 13905204 ~ 13905788 (-)
G16889 NA non-coding upstream 338350 13905904 ~ 13908030 (-)
G16898 NA non-coding upstream 360789 13928343 ~ 13928714 (-)
G16894 NA non-coding upstream 383507 13951061 ~ 14016471 (-)
sae1 sae1 other downstream 221127 13313443 ~ 13335153 (-)
ccdc9 ccdc9 other downstream 294431 13224914 ~ 13261849 (-)
slc8a2b LOC102291167 other downstream 700553 12664199 ~ 12855727 (-)
srsf7a srsf7,LOC103358184 other downstream 894090 12654605 ~ 12662190 (-)
LOC120544465 islr2 other downstream 926188 12625965 ~ 12630092 (-)
si:ch211-14c7.2 LOC103364094,LOC102787713,LOC101474093,LOC102298349,LOC106947863,LOC103138296,LOC106921473 other upstream 95353 13662907 ~ 13762368 (-)
G16871 blvrb other upstream 134089 13701643 ~ 13708040 (-)
G16880 NA other upstream 188395 13755949 ~ 13823057 (-)
gpr4 gpr4,LOC103368504,LOC104964910 other upstream 511023 14078577 ~ 14086764 (-)
caln1 caln1,LOC103372560,LOC107097061 other upstream 680374 14247928 ~ 14322833 (-)

Expression


Co-expression Network