her8.2 (LOC100691593,LOC105923939)


Basic Information

Item Value
gene id her8.2
gene name LOC100691593,LOC105923939
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 19438240 ~ 19440140 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782929.1
GGACATCTGTCGCTTGtgagtatttttctttttctaggCCGGGTCTCTCTGTTATTGAATGGAGCCAGTGACCTGTCAGTCTTGACTGATGGGACCCCGTGTGTGGGAAAATCCCGCAGCCAAAGAGTTGGAGCATTCACATGCTAATTGCGCCCGATAAAAAGAGGGCCGTGCCGCGCCGAGGGCCCTAGAGACGCGCTGAGATTCAGTAGAGGAGGCACAACCGCACAGACACCcgagaaaaaaacatgactgcTTCATCCATGGCGCACAACGCGGGGAAACATCCCAGTGCcaaggaggagagaaagCTGAGGAAGCCGCTCATTGAGAGGAAGCGACGAGAGAGGATCAACAATTGTTTGGATCAGCTGAAAGAAACTGTGATCGGGGCGTTCAGAATTGATCAATCCAAACTGGAAAAAGCCGATATTCTTGAGATGACAGTAAAGCATCTGGAAAACATCCAGAGCAGTAAACTCAACGGCCTGGAGGCCCAGCAGAAATACAGCACAGGGTACATCCAGTGCATGCACGAAGTCCACAACATGCTCCTCACCTGCGACTGGATGGACAAAACTCTGGGCTCTCGCCTGCTCAACCACCTCCTCAAGTCCCTGCCCAGGTCCACCGATGAGAGCCCCCTCCAGCCCTCACCCAGACATGATGTCCCTCTTCCGGCCGGCCAAGGCACGGTGCTCCCCAACACACCCCTCAGAGGAGAACCCCTTGCTGTGAGGCGGCTCCAGAGAGAGTGGTCCACCTGCTATGAGGCAGGCTGCCAAGAGAGGCCTGCACTCCACAACTCCCACCTGGGGATGCTGGAGATGTGGAGGCCCTGGTGAACTGGTGGATTACTGATCTTGGATTTTTCCATTTTGTTAGGCCATCCTCTGTTATGTATCTTATAGATATGCTGCTCAGAAGACAAACGTGGGGCAGTTTTGTTCCAGTGATTATAATTGTAGGTGTGCTGTAATGATTCTATACAGATCTTTTCAAAGTACTTCCCTTCAGAAGTTGATTTCTTGTAGCCTGCATTATAGAAGGCTCTTATTAATCtttcatgtatttattgtattaacatctttatttatttgatatcaTAAGGTATGCTTCTTAGACCAGTTGCTTGGCATTGCATAGATTTCTATGTATTCCTCCTTTGCTGTATTATTAACccaaacattaataataataataa
>XM_039782931.1
GACACCcgagaaaaaaacatgactgcTTCATCCATGGCGCACAACGCGGGGAAACATCCCAGTGCcaaggaggagagaaagCTGAGGAAGCCGCTCATTGAGAGGAAGCGACGAGAGAGGATCAACAATTGTTTGGATCAGCTGAAAGAAACTGTGATCGGGGCGTTCAGAATTGATCAATCCAAACTGGAAAAAGCCGATATTCTTGAGATGACAGTAAAGCATCTGGAAAACATCCAGAGCAGTAAACTCAACGACCCCACAGTAGGCCTGGAGGCCCAGCAGAAATACAGCACAGGGTACATCCAGTGCATGCACGAAGTCCACAACATGCTCCTCACCTGCGACTGGATGGACAAAACTCTGGGCTCTCGCCTGCTCAACCACCTCCTCAAGTCCCTGCCCAGGTCCACCGATGAGAGCCCCCTCCAGCCCTCACCCAGACATGATGTCCCTCTTCCGGCCGGCCAAGGCACGGTGCTCCCCAACACACCCCTCAGAGGAGAACCCCTTGCTGTGAGGCGGCTCCAGAGAGAGTGGTCCACCTGCTATGAGGCAGGCTGCCAAGAGAGGCCTGCACTCCACAACTCCCACCTGGGGATGCTGGAGATGTGGAGGCCCTGGTGAACTGGTGGATTACTGATCTTGGATTTTTCCATTTTGTTAGGCCATCCTCTGTTATGTATCTTATAGATATGCTGCTCAGAAGACAAACGTGGGGCAGTTTTGTTCCAGTGATTATAATTGTAGGTGTGCTGTAATGATTCTATACAGATCTTTTCAAAGTACTTCCCTTCAGAAGTTGATTTCTTGTAGCCTGCATTATAGAAGGCTCTTATTAATCtttcatgtatttattgtattaacatctttatttatttgatatcaTAAGGTATGCTTCTTAGACCAGTTGCTTGGCATTGCATAGATTTCTATGTATTCCTCCTTTGCTGTATTATTAACccaaacattaataataataataa

Function

NR:

description
PREDICTED: transcription cofactor HES-6

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782929.1 True 1204 mRNA 0.49 4 19438240 19440140
XM_039782931.1 False 986 mRNA 0.47 4 19438240 19439910

Neighbor

gene id symbol gene type direction distance location
her13 LOC103373083,LOC104919393 coding downstream 3945 19431359 ~ 19434295 (-)
mrps22 mrps22,LOC103373397 coding downstream 180418 19252336 ~ 19257822 (-)
LOC120552531 NA coding downstream 246450 19190494 ~ 19191790 (-)
LOC120552522 NA coding downstream 269114 19168047 ~ 19169126 (-)
LOC120552541 NA coding downstream 271963 19165388 ~ 19166277 (-)
LOC120548698 NA coding upstream 26523 19466663 ~ 19467908 (-)
rinl NA coding upstream 75123 19515263 ~ 19525581 (-)
sirt2 sirt2 coding upstream 85581 19525721 ~ 19532651 (-)
dmac2 atp5sl,LOC102790974 coding upstream 92970 19533110 ~ 19536541 (-)
LOC120548388 LOC104927217,LOC101068162,LOC100693448,LOC106522132,LOC103364869,LOC101175254,LOC102216590 coding upstream 124078 19564218 ~ 19595131 (-)
G18127 NA non-coding downstream 32879 19383403 ~ 19405361 (-)
G18002 NA non-coding downstream 203783 19230919 ~ 19234457 (-)
G17986 NA non-coding downstream 282989 19154962 ~ 19155251 (-)
G17964 NA non-coding downstream 688839 18749198 ~ 18749401 (-)
G17936 NA non-coding downstream 844567 18592975 ~ 18593673 (-)
G18155 NA non-coding upstream 16073 19456213 ~ 19542671 (-)
LOC120573122 NA non-coding upstream 98235 19538375 ~ 19541130 (-)
G18179 NA non-coding upstream 185263 19625403 ~ 19628640 (-)
G18184 NA non-coding upstream 209076 19649216 ~ 19649652 (-)
LOC120548779 coq8b,LOC103364879,LOC107395920,LOC108247334 non-coding upstream 314747 19754887 ~ 19755993 (-)
LOC120545639 eif4g1 other downstream 1215347 18179013 ~ 18222893 (-)
zgc:165508 fam131a,LOC102799247 other downstream 1286272 18127466 ~ 18151968 (-)
LOC120552194 NA other downstream 1547579 17799999 ~ 17890661 (-)
xaf1 LOC107094331 other downstream 1959337 17472947 ~ 17478903 (-)
G17597 NA other downstream 2507246 16848161 ~ 16930994 (-)
fbxo46 fbxo46,LOC102786997 other upstream 261087 19701227 ~ 19717307 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other upstream 360611 19800751 ~ 19810130 (-)
LOC120547993 NA other upstream 696932 20137072 ~ 20141538 (-)
si:ch1073-340i21.1 NA other upstream 1654037 21094177 ~ 21097201 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other upstream 1797048 21237188 ~ 21261923 (-)

Expression


Co-expression Network