srsf7a (srsf7,LOC103358184)


Basic Information

Item Value
gene id srsf7a
gene name srsf7,LOC103358184
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12654605 ~ 12662190 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782949.1
CTTTAGATTGTGGGGTTGTATTCTATCCAGGAAATTCTGGTGGTGGTTAGCTGTTAGCTGGTCGAACTGTGCGACAGACATGTGGAAGACTTGTTAATGTCCACGAGTGGCTATTTAGCTAGTtcattcagcaaaaaaaaaatagtcgtTTATTCGTTCAAAGCCACCTCGGGCTTCTGTTTGAGGCGGTTGAATTTCACCTGCGTGTAGCTGAATCAGAAATCATCGGAACAGCGGAacaagGCAAGGAGAGATGTCCCACTATTCGTCTTCCCGTAGTTCGTCTCGGGCGACCGACTGTAAAGTGTACGTGGGTGATTTGGGCAACGGTGCTGCCAAGGGGGAGCTGGAGCGAGCATTCAGTTATTATGGCCCGCTGAGAACTGTCTGGGTGGCCCGAAACCCACCTGGCTTTGCCTTTGTGGAGTTTGAGGATGCCAGAGATGCAGAAGATGCTGTGAAAGGCATGGATGGAAAGGTCCTTTGTGGTTCCCGTGTTCGCGTGGAGCTGTCAACGGGCCTCTCCAGGAAGGGCCGTGGGCGCCCCAGCCGACGCCAGTTCGACCCCAATGATCGGTGTTACCAGTGTGGGGACCGGGGCCACTATGCCTACGACTGCTACCGCTTTAGCAAGCGCGGAGGCCGTCGCAGCAGGTCTCGATCTCACTCCAGGTCTAGGTCCAGGTCCCGCGGGCGCCGTTATCGCTCTCGCTCCCACAGCCGTAGCCGTAGCCACAGCCGGAGCCGTCGTCGATCTCCATCCTATTCCAGACGCAGGAGCAGGTCTGGCTCTCCAGCCCGTTCCAAGTCCAGGACTCCAGTGAGAAGtCGTTCCAGATCTCGGTCCGGCTCTGCGCCCAGACGACGCTCTCCCTCCCGATCTCGCTCACGATCTCCAGCAGCCAATCACAAGAGGAACAGCGTGTGGTGGGAGCTGAGCACCGCACTGACACCACAGCTGATCCCAGGCCCAGGGTCTGCCAGCTGGCGGTGTGTACGTCCTGCGGGAGGGTGACTAAGCGCTGACCTGAGATCAGCCTTCGTCTGCATCTGGTGTTAGACAGCGAGAAAGAGGTCGACCTACCGACCGAACCCTCCCCACAGTAAATGGGTGACCGTCTGTTCAACCGACGCACACGCTAAGACGAGATCAGCCCGTGCACACATACAGTTGTTCTACTAGAGTTCTACTAGAGTCACCCAGCCAGCCAGCCTTCAGATGTACCAGAGGGCTGACCCACACAGATCAGAGTTCGACCGCTACCTTTTTAAATCCATTACCTACCTACCAGACCCCCCTACCTACCAGAGTTCTTCGGCCTCTGTCTTAGCTTCTGAAAGAGAGCTGACGAGAGATCAGTCTTCAAGAGCCTCCCAGCGCAGTGTCTCTCCGAGTTGTAGTCGTCCGTCCTACAGTCCTTTCATCCTTCGCTTCTCTGTACTTGTTGTTTCTGCCACTGTCTCCAAAGGTAACCAAAAATCAAACCCCCTGACAAGCTCATGTTCATGGTGAAAGAAAATGCACAGGTCTGATGTAGTCTGGAAAACTGGTGATTGTAGAGCTAAAGTTGAGGCTTTAACAAGCATGCTCAGAGTacaaatgtgtgtttgcatgcgaGTGCGCGTGGATGATTGAGTGAGTGCAAGAGAGGAAGGCAAGGTGAATTTTAATGGGTTGAGCTCTGAGGAGGGTTTGTCagacatgtttttcttcttgtgcCGTAGATGTTGCAACATCATTACAGTTTTTAAGCAGCTTTATCATTTTAGTACAGTACAATAATAGTGGTGGCTTTTAGATGTGCAGTTCCTTCTCTGGTCATGATATAGAACAGTTTCCATTAGGGCTTAACGATATGGGGAAATAATTGAATTGCTTTTTTACACTTAaattgtgattttaaaaaaaggtaatCTTCTGTATTACCTATACACAAGCTATAAATCATTCTATAGTATGACCAACACAACATTGGATACTGTCAACATAAACTGTGTTCAAAATTCAAGTGGCTCTACCACTCGCCTCGTTGTAAACCTGTTGCGAATGTTCCTGCTTCAGCTTCCAGATTGTGGTCGGGAAGCACACGGACACTCCTCAGAGCAGAAACTATAAATCTGTTGTAGTCGCAAGTGAGGAGACTATGTCAAGGAACAGTCAGGATTTTAAATGGGTGTTTTTTGCCCTGGGGGGGGTTCAATTGTGTATTTAGCTTTTGACATGACATGTATTTCTttgaaatacaaatataaagttGCCTTAGACATAGTAAACACTGAAAGAAGAATAAAATCATCTGGTCCTTGGTCTGAGAGGTCAAAGAGGTATTGAGGTAGTTAACCAGTATCCGCGCCTATCCAGTCACGGACTTTCTCACAAGATGTACACCGTGTTAAGATGTTGAGTAATGAgggattttgtgtgtgatcaTTCTTCCATCCTCCCCTGTGGCGAGCTAACTCCTCTTCGTTTCTGTTTCAGTCGTTCCCGTACAGCAAGTCCACACCGAAGCCCCACGCCGGCAGACGACTGAGTGAAGAAGACTTATTAGTTCCTTAACAGACAGACCCTCTACTCTGCACCCCGTCTGCTTTCACAGCCCTACAGCAGCTGTTTTTTGTACTTTGTCTGTTTAGTCCCAgtcttttttaagattatttttctcCCCAGGACTAGTAGTCTTCGTGCAGCCTCAGATTGTTGAAGAATTAGTCAGTTTAGCAGACAAAATCAGTTTCCATTTGATAGAAAGTGTACTGCTGTTGCATaggtcctctttcttctctgaAGACGCGTGCTGTAGCAAGTGTAAGAAGCAACACCTGTGTTAAGGTGATACTGAATGTTGCCATTGGCTTTTAGCAGTGATATGAGTAGCTTGTACAGTACACTTTCTGTGGAAGATAGCCCAGTTGATGCAGCGTTTGAGAGTGAAGACATTGCATTGAAAACTGCTTTTATTCCCTAAAATTTCTAAACCATCAAAATATTTTCCCCATTGAGAATCggcaaacaattttttttttttttgtattgctcTCCAATTTGAATTTTTAGGTTAAGCTGCCGTTTAATGTTTCCACTCATGATGGCATAAGGAGGTAGTTGCTGGCCTGCATGCCTTTGAATATGTAGTCACATTCCTGTTTGTTGTTTCTGTGCTGCACTGCCCCCTTTTATGAACCTCATCAGCTTTACGGTGTGCTGAATGGATTTTCCCCATGTGTTGAATCTCCGATTTTGTTtgacttttaattttaaaaaaaatacagtgctGAAGTTTGATTTCTGTAAGGGCTGCTTTAACAGTTTTGTTCTGTTCCTGGCTTATACTGTAAGACAGTGGCAGTTTCAGTTTTGAATAAACCCCTTCAACGTA
>XM_039782960.1
TTAGATTGTGGGGTTGTATTCTATCCAGGAAATTCTGGTGGTGGTTAGCTGTTAGCTGGTCGAACTGTGCGACAGACATGTGGAAGACTTGTTAATGTCCACGAGTGGCTATTTAGCTAGTtcattcagcaaaaaaaaaatagtcgtTTATTCGTTCAAAGCCACCTCGGGCTTCTGTTTGAGGCGGTTGAATTTCACCTGCGTGTAGCTGAATCAGAAATCATCGGAACAGCGGAacaagGCAAGGAGAGATGTCCCACTATTCGTCTTCCCGTAGTTCGTCTCGGGCGACCGACTGTAAAGTGTACGTGGGTGATTTGGGCAACGGTGCTGCCAAGGGGGAGCTGGAGCGAGCATTCAGTTATTATGGCCCGCTGAGAACTGTCTGGGTGGCCCGAAACCCACCTGGCTTTGCCTTTGTGGAGTTTGAGGATGCCAGAGATGCAGAAGATGCTGTGAAAGGCATGGATGGAAAGGTCCTTTGTGGTTCCCGTGTTCGCGTGGAGCTGTCAACGGGCCTCTCCAGGAAGGGCCGTGGGCGCCCCAGCCGACGCCAGTTCGACCCCAATGATCGGTGTTACCAGTGTGGGGACCGGGGCCACTATGCCTACGACTGCTACCGCTTTAGCAAGCGCGGAGGCCGTCGCAGCAGGTCTCGATCTCACTCCAGGTCTAGGTCCAGGTCCCGCGGGCGCCGTTATCGCTCTCGCTCCCACAGCCGTAGCCGTAGCCACAGCCGGAGCCGTCGTCGATCTCCATCCTATTCCAGACGCAGGAGCAGGTCTGGCTCTCCAGCCCGTTCCAAGTCCAGGACTCCAGTGAGAAGtCGTTCCAGATCTCGGTCCGGCTCTGCGCCCAGACGACGCTCTCCCTCCCGATCTCGCTCACGATCTCCAGCAGCCAATCACAAGAGGAACAGTCGTTCCCGTACAGCAAGTCCACACCGAAGCCCCACGCCGGCAGACGACTGAGTGAAGAAGACTTATTAGTTCCTTAACAGACAGACCCTCTACTCTGCACCCCGTCTGCTTTCACAGCCCTACAGCAGCTGTTTTTTGTACTTTGTCTGTTTAGTCCCAgtcttttttaagattatttttctcCCCAGGACTAGTAGTCTTCGTGCAGCCTCAGATTGTTGAAGAATTAGTCAGTTTAGCAGACAAAATCAGTTTCCATTTGATAGAAAGTGTACTGCTGTTGCATaggtcctctttcttctctgaAGACGCGTGCTGTAGCAAGTGTAAGAAGCAACACCTGTGTTAAGGTGATACTGAATGTTGCCATTGGCTTTTAGCAGTGATATGAGTAGCTTGTACAGTACACTTTCTGTGGAAGATAGCCCAGTTGATGCAGCGTTTGAGAGTGAAGACATTGCATTGAAAACTGCTTTTATTCCCTAAAATTTCTAAACCATCAAAATATTTTCCCCATTGAGAATCggcaaacaattttttttttttttgtattgctcTCCAATTTGAATTTTTAGGTTAAGCTGCCGTTTAATGTTTCCACTCATGATGGCATAAGGAGGTAGTTGCTGGCCTGCATGCCTTTGAATATGTAGTCACATTCCTGTTTGTTGTTTCTGTGCTGCACTGCCCCCTTTTATGAACCTCATCAGCTTTACGGTGTGCTGAATGGATTTTCCCCATGTGTTGAATCTCCGATTTTGTTtgacttttaattttaaaaaaaatacagtgctGAAGTTTGATTTCTGTAAGGGCTGCTTTAACAGTTTTGTTCTGTTCCTGGCTTATACTGTAAGACAGTGGCAGTTTCAGTTTTGAATAAACCCCTTCAACGTA
>XR_005637072.1
CTTTAGATTGTGGGGTTGTATTCTATCCAGGAAATTCTGGTGGTGGTTAGCTGTTAGCTGGTCGAACTGTGCGACAGACATGTGGAAGACTTGTTAATGTCCACGAGTGGCTATTTAGCTAGTtcattcagcaaaaaaaaaatagtcgtTTATTCGTTCAAAGCCACCTCGGGCTTCTGTTTGAGGCGGTTGAATTTCACCTGCGTGTAGCTGAATCAGAAATCATCGGAACAGCGGAacaagGCAAGGAGAGATGTCCCACTATTCGTCTTCCCGTAGTTCGTCTCGGGCGACCGACTGTAAAGTGTACGTGGGTGATTTGGGCAACGGTGCTGCCAAGGGGGAGCTGGAGCGAGCATTCAGTTATTATGGCCCGCTGAGAACTGTCTGGGTGGCCCGAAACCCACCTGGCTTTGCCTTTGTGGAGTTTGAGGATGCCAGAGATGCAGAAGATGCTGTGAAAGGCATGGATGGAAAGGTCCTTTGTGGTTCCCGTGTTCGCGTGGAGCTGTCAACGGGCCTCTCCAGGAAGGGCCGTGGGCGCCCCAGCCGACGCCAGTTCGACCCCAATGATCGGTGTTACCAGTGTGGGGACCGGGGCCACTATGCCTACGACTGCTACCGCTTTAGCAAGCGCGGAGGCCGTCGCAGCAGGTCTCGATCTCACTCCAGGTCTAGGTCCAGGTCCCGCGGGCGCCGTTATCGCTCTCGCTCCCACAGCCGTAGCCGTAGCCACAGCCGGAGCCGTCGTCGATCTCCATCCTATTCCAGACGCAGGAGCAGGTCTGGCTCTCCAGCCCGTTCCAAGTCCAGGACTCCAGTGAGAAGtCGTTCCAGATCTCGGTCCGGCTCTGCGCCCAGACGACGCTCTCCCTCCCGATCTCGCTCACGATCTCCAGCAGCCAATCACAAGAGGAACAGCGTGTGGTGGGAGCTGAGCACCGCACTGACACCACAGCTGATCCCAGGCCCAGGGTCTGCCAGCTGGCGGTGTGTACGTCCTGCGGGAGGGTGACTAAGCGCTGACCTGAGATCAGCCTTCGTCTGCATCTGGTGTTAGACAGCGAGAAAGAGGTCGACCTACCGACCGAACCCTCCCCACAGTAAATGGGTGACCGTCTGTTCAACCGACGCACACGCTAAGACGAGATCAGCCCGTGCACACATACAGTTGTTCTACTAGAGTTCTACTAGAGTCACCCAGCCAGCCAGCCTTCAGATGTACCAGAGGGCTGACCCACACAGATCAGAGTTCGACCGCTACCTTTTTAAATCCATTACCTACCTACCAGACCCCCCTACCTACCAGAGTTCTTCGGCCTCTGTCTTAGCTTCTGAAAGAGAGCTGACGAGAGATCAGTCTTCAAGAGCCTCCCAGCGCAGTGTCTCTCCGAGTTGTAGTCGTCCGTCCTACAGTCCTTTCATCCTTCGCTTCTCTGTACTTGTTGTTTCTGCCACTGTCTCCAAAGTCGTTCCCGTACAGCAAGTCCACACCGAAGCCCCACGCCGGCAGACGACTGAGTGAAGAAGACTTATTAGTTCCTTAACAGACAGACCCTCTACTCTGCACCCCGTCTGCTTTCACAGCCCTACAGCAGCTGTTTTTTGTACTTTGTCTGTTTAGTCCCAgtcttttttaagattatttttctcCCCAGGACTAGTAGTCTTCGTGCAGCCTCAGATTGTTGAAGAATTAGTCAGTTTAGCAGACAAAATCAGTTTCCATTTGATAGAAAGTGTACTGCTGTTGCATaggtcctctttcttctctgaAGACGCGTGCTGTAGCAAGTGTAAGAAGCAACACCTGTGTTAAGGTGATACTGAATGTTGCCATTGGCTTTTAGCAGTGATATGAGTAGCTTGTACAGTACACTTTCTGTGGAAGATAGCCCAGTTGATGCAGCGTTTGAGAGTGAAGACATTGCATTGAAAACTGCTTTTATTCCCTAAAATTTCTAAACCATCAAAATATTTTCCCCATTGAGAATCggcaaacaattttttttttttttgtattgctcTCCAATTTGAATTTTTAGGTTAAGCTGCCGTTTAATGTTTCCACTCATGATGGCATAAGGAGGTAGTTGCTGGCCTGCATGCCTTTGAATATGTAGTCACATTCCTGTTTGTTGTTTCTGTGCTGCACTGCCCCCTTTTATGAACCTCATCAGCTTTACGGTGTGCTGAATGGATTTTCCCCATGTGTTGAATCTCCGATTTTGTTtgacttttaattttaaaaaaaatacagtgctGAAGTTTGATTTCTGTAAGGGCTGCTTTAACAGTTTTGTTCTGTTCCTGGCTTATACTGTAAGACAGTGGCAGTTTCAGTTTTGAATAAACCCCTTCAACGTA

Function

symbol description
srsf7 Enables protein domain specific binding activity. Involved in RNA splicing and negative regulation of mRNA splicing, via spliceosome. Located in nucleoplasm. Biomarker of clear cell renal cell carcinoma.

NR:

description
PREDICTED: serine/arginine-rich splicing factor 7-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12896 SRSF7, SFRS7; serine/arginine-rich splicing factor 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782949.1 True 3380 mRNA 0.47 8 12654605 12662190
XM_039782960.1 False 1817 mRNA 0.49 8 12654605 12662188
XR_005637072.1 False 2367 transcript 0.50 9 12654605 12662190

Neighbor

gene id symbol gene type direction distance location
LOC120544471 hnrnpl coding downstream 3530 12637166 ~ 12651075 (-)
ech1 ech1,LOC101464128,LOC102289637 coding downstream 34090 12613881 ~ 12620515 (-)
med17 med17 coding downstream 69107 12573677 ~ 12585498 (-)
LOC120554567 NA coding downstream 88560 12565855 ~ 12566045 (-)
LOC120554484 NA coding downstream 89713 12564729 ~ 12564892 (-)
LOC120548705 NA coding upstream 214397 12876587 ~ 12907961 (-)
actn4 actn4,LOC106956878 coding upstream 249308 12911498 ~ 12983519 (-)
zgc:85932 LOC102780342 coding upstream 327607 12989797 ~ 13021862 (-)
trnak-uuu_3 NA coding upstream 336777 12998967 ~ 12999039 (-)
trnak-uuu_5 NA coding upstream 342027 13004217 ~ 13004289 (-)
G16554 NA non-coding downstream 78022 12576233 ~ 12576583 (-)
G16531 NA non-coding downstream 210596 12443629 ~ 12444009 (-)
G16528 NA non-coding downstream 238692 12413484 ~ 12415913 (-)
G16525 NA non-coding downstream 259768 12394490 ~ 12394837 (-)
G16439 NA non-coding downstream 395981 12257150 ~ 12258624 (-)
G16676 NA non-coding upstream 160239 12822429 ~ 12822922 (-)
G16678 NA non-coding upstream 206691 12868881 ~ 12911173 (-)
G16688 NA non-coding upstream 353435 13015625 ~ 13137068 (-)
G16706 LOC101165163 non-coding upstream 461529 13123719 ~ 13125662 (-)
G16709 NA non-coding upstream 502627 13164817 ~ 13165594 (-)
LOC120544465 islr2 other downstream 24513 12625965 ~ 12630092 (-)
LOC120554539 NA other downstream 112150 12542265 ~ 12542455 (-)
LOC120554398 NA other downstream 113222 12541220 ~ 12541383 (-)
LOC120554618 NA other downstream 114583 12539837 ~ 12540022 (-)
LOC120554358 NA other downstream 115730 12538712 ~ 12538875 (-)
slc8a2b LOC102291167 other upstream 2009 12664199 ~ 12855727 (-)
ccdc9 ccdc9 other upstream 562724 13224914 ~ 13261849 (-)
sae1 sae1 other upstream 651253 13313443 ~ 13335153 (-)
si:ch211-14c7.2 LOC103364094,LOC102787713,LOC101474093,LOC102298349,LOC106947863,LOC103138296,LOC106921473 other upstream 1000717 13662907 ~ 13762368 (-)
G16871 blvrb other upstream 1039453 13701643 ~ 13708040 (-)

Expression


Co-expression Network