irf2bp1 (LOC103377881,LOC103364085,LOC104964332)


Basic Information

Item Value
gene id irf2bp1
gene name LOC103377881,LOC103364085,LOC104964332
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13908129 ~ 13912626 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783199.1
GTCTGGGAAGCAGTTGACAGCAGTCAAGAGCAGGCCGAAGTgggtaaacaaaacaaacattttttttgttaaatagcGAAAACAACCCAAAGGTTTGATCTACTTTTATATCCGAAGAATGTGTAACATTGTTCTGAAGGGGTTTGAAGCCCGTTAAAGTGAAAAGTCGTTAGCAAAGAGAGGGCGTGCACCTGTCTAAGCTAAATAGGttaacctagctagctaacgtctGTCGTTGAGCCCGCTcaggttagctagctagctagctggccaGCCATGTcgtccccctcctcctccaggcGCCAGTGGTGCTACCTGTGCGACCTGCCAAAGATGCCGTGGACTGTGGTGTGGGACTTCAGCGAAGTGGTTTGCCGTGGCTGCGTAAACTACGAGGGAGCTAATCAGATTGAGTTCCTTATAACGAATGCCCGACAGCTGAAACGAACTCACGGGATGCAGGACGGTAACGTCAGGTCACCTGGTCCCTCGCCCAATAAACACGGCACATCTGGAAGAGGAGATGCGGACGGAGGCAGGCAGCACATGGACCGCTACGacaggggaggaagaggagaaagtaCCGTGTCTGCTATTCGTGTGCCGCCCAACGGGCTGCACCGCGACGGCCAGCAGCCTCAAGAATTGAACCGTCAGAGCCCCAGCGGCAGCCGAAGACCCATGCTAGGCGCTGCCATCCCTCCTAATCTAGTGACTCAGAGTATTGCAGGGATTCCCCATGGGTTACTTACGGGCATGCCGGCGGGTCTAACCGCCAGGACAGCCCCCATGAGCAGCCCCATGATCTTCCCTGCCCCGGTGCTGGCCGAGATGAGCCGCAGACAGCTGGGGATAGGGATGGGGATAGCTCCTTTTATCACTCCGGAGCTGGAGCGAGAGCTCAGTTCGTCCCAGAATCAGCCCAAGATGCAGACACAGATCCACACTGCTGTGGCTGGCAGCAGCGCCAGTAAGAGTACAGGCATCCCTTCTTCTACCTCGACCCTGGCTGGAGGTGTGAGCCAGACCAGCCCCAAGCCTGCCTCATCACCAGCCAGGCAGCCACGGCCCCTAACTGCGAGGTCCGGAGGGGAGCCCCTGGGATCCAGCACCTCAGCAGAGGCTGCCACCACAGCTGCAGCGTTACCCCACAGCGGTGCCTCTGAGCTGGGATCAGCATCTGCCAGCAACACTCATTCAACTGGAAACACTCTATCCTGCACCTTGTGTCATGAGAGGCTGGAAGACACACACTTTGTTCAGTGTCCATCAGTGCCTGGGCatagGTTCTGCTTCCCCTGCACCAGAGTGTACATCCAGAGCCGGCGGGGCGATGGGGAGGTGTACTGCCCCAGCGGAGAGCGCTGTCCACTGGACAACTCTCCCAACAGTCCCCCTTGGGCCTTCATGCAGGGAGAGGTATCCACCATACTCGGCACTGCCGGAGCAGGAGCTGCATCAGCTGCTGCATCTGGAGCCGGGAACGGGCCTGGAGCTGCGGCTGCGTCCGGGGCCGGGAGCGGAGCGGCCAGCGGAGCGGGAGCCGCCAGCGGAGACGTCACCgtcaagaaagagagagagacgtgaTGATGGCTTCCATGGAAACCAGACCAGGAACCAGTACAGCAACAGAGTTGAATCGCATACCAGAAAGAGACGTCTGCAATGGAGCTCTGAGAGATCCAGAAGAGAAGCAACACAGTTCGGAAAACCTCCATTGCACAGGTCTTGACTCCAACTACTAACACCACCCAATTCTATCAACATTATCAGACCTAAAATTGCCTTTTGATGTACTGTTGGAATCAGATATTCAGGGCCAATCAACAGCTGAACAGTGGCTACTTTTGTAGTGTTAGTAGTAGTTGTGCCAGTAGAAACAACTGGGCTGCGTTTCAAAAGTGGTTCAACATGCTCTCGTTCACTTCCCCTAAGCACTTGCTCTCGGGGGGGGGGTAATCCCCACCGCCATCTTAAGTGTCGCTCCAATCGTCTAAAAAAACAGGAGGGGGCTTGGTGAGATCGAGCGAGTGAATAACGATGGTCACTCCAGAGGTGGACATCACCCACAAGTCATTACAGTTATGCATTTGGGGCAAAAAAAATAGATTGATGGTTAGGTGGCAGTAATGTACAACCGTTATAACTCCTGTTGCTGACCACCAAAGAAGGAGAAgatgaaaaaatacatttcaactTTTTAGTTTCCTCATTGTTAGCTCGATATTTTACTGAAACATGTCAATTtactttatacattttatttacaagATAGTTGTATGTGTGATTTCTTCAATTCCAACCTTATCTGTAAATGCGTGGAAGAAACTCTGTTTTTGCGAGATGTAAGCATTAAAATGGTAAATGATACAGATCACACTTTTCTAAATATGAAACTCGTGCAGCTGATTACCAAGCCTCATTGAAATGAATCTGCAGGTATTTATGATGTGTGAAAAGCAGTAATAatacttttttataaataatatttgtatTGCGCCTTTCGTACAAGAAATAGGCCTGCTGTACAATAAGGAAATTGCATGACATAAGCAGACATGGAATGAACATAAAACGGGGATATAAAGCCATAATTAATAGAAAATAAGATgggtaataaaacacacttgaagcAGTAGCGCTAAGCCTACAACTGGCGGTCGATCCGTATAGTTTGGGCTGAGAGTTAACGGGGGCAGGTGTGTTCCATTTCACTGCCCCTGCCCCGCCCACTTTCCCTCTGCTCTCCAAGTGGCCGCCTTGCGACATATGCTATGACGACCAAGGGCTGAGCGAATTGAAGGAgggcatgttaaaaaaaataaactaatgaAACGCAGCCCTGATCATGCCCACATTAGCACTGCCAGCTAGCTACTGTTAGCAGCTGGACACAAACGGGCTGAAGCcacacgtagactacaccagtCTTTTCTCACTTTTCTACAAACAAAAATCTACACCACCATTGCAATCTTTTGAAAGATTTCGTAATCGCATAAACAACTGTCACACTTGAATATGCACCTTATGAAACAACCAGTGCCAACAGGACTACTGAAATGTCTCCATTTCTCTTATCTGGCCACCAgtgtattcatattttatttatttggttttatttgctaATGGTAGCCTGTTAGCAGAACTAATATAGGGATGTTTTTAGTTTCAAATGATCCTTCTCAAACTCACAGAAAGTAGCCACGCTCCAGTGTTTACTTCAACAATACACTCAATACTGTGTTTGCACGGGAAAGCACAGAAAGCTTGTTTTGACAAATccaacacaaatgttgaaatgctAAAAACAGTGGCCACGGTTGTCCTGTATCTTTCCTGTTTGATGAACAAACTTTGGCCGGCAGCTTGCAGCAGGAGGTCAGATATCAGACTGTTGGCAGAAAAACACAAGCTGTTCGGAGTTGAAACAAGTTGGAACTCGCCATGCCATTTTCTCTGCCAGTGCTTGGTCTAATAAAATCTTCGTGCTTCTACAACTACGATTAACATTAACAACTGACACGACACTGACAGTTATCGTGACAAAGTGTACCTTAAATTTCAAgttatttgtattgttttgaCTGTATCTGTGTCCTGATGCGCAATcagattgtttaaaaa

Function

NR:

description
PREDICTED: interferon regulatory factor 2-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783199.1 True 3627 mRNA 0.49 3 13908129 13912626

Neighbor

gene id symbol gene type direction distance location
foxa3 LOC103364086 coding downstream 8225 13895034 ~ 13899904 (-)
pld3 pld3,LOC103364087 coding downstream 69323 13825916 ~ 13838806 (-)
prx NA coding downstream 96360 13765544 ~ 13811769 (-)
kcnk6 kcnk6,LOC104944303 coding downstream 170736 13719887 ~ 13737393 (-)
LOC120574254 sptbn4 coding downstream 214093 13576093 ~ 13694036 (-)
nova2 LOC104927796,LOC101481231,LOC103377877,LOC107097063,LOC103138289,LOC106535085,LOC107379798,LOC100701682,LOC102216529 coding upstream 47144 13959770 ~ 14044832 (-)
eml2 eml2 coding upstream 253487 14166113 ~ 14203307 (-)
LOC120544580 hnrnpab coding upstream 373097 14285723 ~ 14286550 (-)
tyw1 LOC101477816,LOC102209872 coding upstream 431493 14344119 ~ 14415378 (-)
LOC120553667 LOC103373161,LOC102210664,LOC102799935,LOC102292497,LOC101477532,LOC100695891,LOC101161321 coding upstream 508379 14421005 ~ 14422454 (-)
G16889 NA non-coding downstream 99 13905904 ~ 13908030 (-)
G16888 NA non-coding downstream 2341 13905204 ~ 13905788 (-)
G16882 NA non-coding downstream 138049 13767899 ~ 13770080 (-)
G16751 NA non-coding downstream 509809 13396210 ~ 13398320 (-)
G16737 NA non-coding downstream 547910 13318063 ~ 13360219 (-)
G16898 NA non-coding upstream 15717 13928343 ~ 13928714 (-)
G16894 NA non-coding upstream 38435 13951061 ~ 14016471 (-)
G16933 NA non-coding upstream 226100 14138726 ~ 14140433 (-)
G16942 NA non-coding upstream 301222 14213848 ~ 14215714 (-)
LOC120551036 NA non-coding upstream 608140 14520766 ~ 14523356 (-)
G16880 NA other downstream 85072 13755949 ~ 13823057 (-)
si:ch211-14c7.2 LOC103364094,LOC102787713,LOC101474093,LOC102298349,LOC106947863,LOC103138296,LOC106921473 other downstream 145761 13662907 ~ 13762368 (-)
G16871 blvrb other downstream 200089 13701643 ~ 13708040 (-)
sae1 sae1 other downstream 572976 13313443 ~ 13335153 (-)
ccdc9 ccdc9 other downstream 646280 13224914 ~ 13261849 (-)
gpr4 gpr4,LOC103368504,LOC104964910 other upstream 165951 14078577 ~ 14086764 (-)
caln1 caln1,LOC103372560,LOC107097061 other upstream 335302 14247928 ~ 14322833 (-)
si:ch1073-145m9.1 LOC104930674,LOC104957430,LOC102079100,LOC108239365,LOC105418711 other upstream 1406214 15318840 ~ 15325799 (-)
lyrm9 lyrm9 other upstream 1734015 15646641 ~ 15651047 (-)
G17287 NA other upstream 1782928 15695554 ~ 15719041 (-)

Expression


Co-expression Network