LOC120547748 (LOC100707466,LOC102206406,LOC103373746,LOC101483620,LOC102290800)


Basic Information

Item Value
gene id LOC120547748
gene name LOC100707466,LOC102206406,LOC103373746,LOC101483620,LOC102290800
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9603260 ~ 9625781 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783389.1
gtTGTACCGGACGTTTAAAGACAGTAAATACCTGTACATGCTGATGGAGGCCTGTCTGGGAGGAGAGCTGTGGACCATTCTGAGAGACAGGGGTTCATTTGAAGACTCGACCACCCGTTTCTACACAGCGTGTGTGGTCGAAGCCTTCGCCTACCTGCACGCCAAAGGCATCATTTACAGAGACCTGAAACCCGAAAACCTCATCCTGGACAGCCGGGGATACGCCAAGCTGGTGGACTTTGGTTTTGCCAAGAAGAACGGTTTCTGTAAGAAGACATGGACGTTCTGCGGGACTCCGGAGTACGTGGCTCCGGAGATCATCCTCAACAAGGGTCACGATGTCTCGGCCGACTACTGGTCTCTGGGCATCCTGATGTACGAGCTGCTGACCGGCAGTCCCCCTTTCTCAGGTCCAGATCCGATGAAAACCTACAACATCATCCTGAGAGGCATCGATATGGTCGAGTTCCCCCAGAAGATCACCAAGAACGCTGCCAACCTCATCAGGAAGCTCTGCAGAGACAATCCCTCCGAGAGACTCGGGAACCTGAAGAACGGAGTCAAGGACATCCAGAAGCACAAGTGGTTTGAGGGCTTTAACTGGGACGGCCTGAGGAAAGGGACTCTGACTCCGCCCATCACACCTGATGTTTCCTCTCCGACCGACACAAGCAACTTCGACAGTTTCCCGGAAGACACAGACGAGCCGCCACCGGACGACAACTCCGGATGGGATTACGACTTTTAGTCCAGCTCGTATCCAAACCCAAAGCCTGACACTGTTACGGCTGGCATCGTCGATATCAAAATCTGGGAAGAAGACGACTTCCTTCACCGCCAGGCTGACGAAAGAAACAAAGATGAGCTCAATGTGCCATTTGGAGGACGTCTTACTTACCCACAGCGCCTACTGTGACTTTGCTTGTGTTGTTTAAAGTATTATTGGACCCTGTAGGAATCAAACGCCCAAGTTTTGTGGCCACATTGGGTCCCCAAGGGATTTGAGTACTGAGGGAAAGAACTGGAGGTCTCTCAAAGATCAAACTTGTACTGTTTGTTCGCTTTAACCGGAGGAAGCGTGAGCTGCAAAAACACCTGAAAACTGGAAGAGAAAGGTGTTTGTAGGAATCAAACCCTCAAGTTTTGTAGCCACATTGTGTCCCCAAGGGATTGGAGTATGCAGACAGCAGCAGATGGAGGAGGATTGGAGTTCTCTCGCTGATCAAACTGGTCCGGTTTGGGCCCTCTAACTGGAGAAACCATAAGCTGCCAGAACACCTTAGAGctggaagaggaaggggaggtTCAAGGATGAATCAACAGTTGGCCCCTGTTTCCAAGACCAGGTCCACTTGTTTTTCAAGTCCCTCAGAGTAGTTAAAAGTTCTTCGAAATCTCAGAGTGACACATGCCTGGTTCAAAGGGGTTCAAGCGTGTTCTTGACTTTTACAACCTGAGAAAGGTATCCTCCAGATTTTAGAAAGCTGTCAGAAATCTGTAACATAATTACTCAGTCTGCAAAAATGTGCCCATGGGGAAGAAAATAATTGCAAGGCCTAGGAGTGTTTCCTTTCAAAGCCAGGTGATTCTGAACCGAGAACAACCCTGATTCCTTGTTTGTCTACAGCTGAACTTTGGGTATGTTCATCCATCAGCAGTCAGTCATGCTGTAAGTCCTATATATTGCTGCAAGACAACTGTTTATCATGTCTTTGAATCAGTCTTAGAGTAACGCATATGTGGTCCTACTTTGGGTAAAAGAGTACAAGCATGTCCTTAACTTTCTCGACCGGGGTAAAGTCATCCAAAGCCAGCTCTTTCAGATGTTAGAGAGCTGTCAGAACTCTGGAACATTATCACCTCGTGAACACAAATGTGCCAACgcttaaaaataaaagacatttgaGCAATGCCACGGAAGTTTTAACCAAGAACGACACTGATTCCTTGTTTGGCTGCAGCTCAACTTTGGGTATGTTCACCGATCAGCAGTCGGTCTCACACTGGAAATGGAAAGCCTCGGTCAAGACACAAAGTGAGTCGGGCATGTGCAGAATAGCTGCCATCTTTGACAAGTGGGTAACACTAAATACTGTCAACCAGGAAAAGCGTGTTCGTTCCTTGGAAGTGTTTTCATTCAGGGcagtcatctggcggtgcctgtacccGACACGCAGTCAcctatttgtgtatatatatagagtACCAGTCAATGGTTTGGACACACTGTTCCATTcacttgaatgagaaagtgtgtccaagcCTTTGACAGGTGCTGTATATATATTGACCATTTTGCATATCGCGTCAGTCAGTAACTATGTGGTATGTCCAAGTGGTGTTGCCATACCTACCTGTCAAAGATGGTGGCCGTTCTGCACATGGCCAACTCACTTTTAGCTGCATCTCATGTCGCTTAAATTGCCTCCCAGACTCCTTCACTTGGCTCCCTTCCTCGcatcttagtccctcccaccgaggaggcaAGGGAGAGACGTGAGGAGTCatcggaggagagaggcaacgagcaaatgtgttttagagagaTGAGacctcctttcctctgaagcgttgCATCAATACGTCAGCTGTTTGGGTGGAGCTAGGCTGCTGTCTGTATCCTCACCTATAGCTCCTCAATGATCCTTCCTcaatgatccctcctcgatgatcCTTCCTCAATTATCCTTACTCAATTATCCTTCCTCAATGATCCTTCCTCAATGATCCTTCCTCAATGACCCTTCCTCAATGATCCTTCCTCAATGATCCTTCCTTAATGATCCTTCCTCAATTATCCTTACTCAATTATCCTTCCTCAATGATCCTTCCTCAATGATCCTTCCTCAATGACCCTTCCTTAATGATCCTTCCTCAATTATCCTTACTCAATGATCCTTCCTcaatgatccctcctcgatgatccctcctcaaTTATCCTTCCTCAATGATCCTTCCTCGATGATCCTTCCTCAATGATCCTTCCTCAATTATCCTTCCTCAATGATCCTTCCTCGATGATCCTTCCTCAATGATCCTTCCTCAATTATCCCACTTCAATGATCCTTCCTCAATGATTCCTCCTCAATGATCCCTCCTCAATGATCCTTCCTCAATGATCCTTCCTCAATGATCCTTCCTCAATGATCCTTCCTCAATGATCCTTCCTAGATGATCCTTCCTCAATGATCCTTCCTCAATGATCCTTCCTCAATGATCCGTCCTCAATGATCCTTCCTAGATGATCCTTCCTCAATGATCCTTCCTCAATGATCCGTCCTCAATGATCCTTCCTAGATGATCCTTCCTCAATGATCCTTCCTCAATGATCCTTCCTCAATTATCCCACTTCAATGATCCTTCCTcaatgatccctcctcgatgctcccttctcgatgatccctcctcaaTGATCCTTCCTCGATGATCCTTCCTCGATGATCCTTCCTCGATGCTCCCTtctcgatgatccctcctcaaTGATCCTTCCTCAATGATCCTTCCTCAATGATCCttcctcgatgatccctcctaggacctcggggcagaaataagagctttgagacggccttcaccgagcAGAGGACCGAACAACTCCCTGGTCAGCCGAGGACAGAGGAGTCGAGGAGATCTCACATGATAAGTCCCACAGGATGTACCTATTGTATCTTGACAGCCTCTGCTCCTGTCAAGTGTCCTTGATCAGTGGCTGAcacctgacctttgaccccttaCGAGGGAGATCATGCTTCTGCTGCCTGTCCTGTGATATTGCGATGTCGTTTGGGTTTTGTGGTTTCTGGTGGGTTTTTTTGGACCCTTTGAACCCAATTTTTGACTCTGCGAGAGTTGGCTGGAGGAGTGATGGTTGCAAGAAGATTTTGGACGAACTCAAACCACAGGAGAAAAGATTTAAGACTGAACAGGCAAACTCGGGGTCACCATGTTGCCTTCATTGTCATTTCAGTTTCGGGAACTTTAAAATCCAAAgacagaaagcctttttttagATATTTTGGGGGGCGTAGCAACAGTGGTCGTCCTCACTGGATGATGCATGGGAGTTGAGAAAATTCCtactgttaacccttgtgttgtctcccCTTCGACCATGATGCAACTT

Function

NR:

description
PREDICTED: cGMP-dependent protein kinase 1 isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0030553 cGMP binding molecular_function
GO:0004692 cGMP-dependent protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783389.1 True 4123 mRNA 0.47 7 9603260 9625781

Neighbor

gene id symbol gene type direction distance location
LOC120551143 NA coding upstream 48644 9544019 ~ 9554616 (+)
LOC120543784 NA coding upstream 264092 9331567 ~ 9339168 (+)
LOC120543792 NA coding upstream 273748 9309207 ~ 9329512 (+)
LOC120543803 NA coding upstream 287938 9309199 ~ 9315322 (+)
LOC120551113 NA coding upstream 301999 9283464 ~ 9301261 (+)
clip3 clip3 coding downstream 124850 9750631 ~ 9797726 (+)
trnar-ucu_10 NA coding downstream 244052 9869833 ~ 9869924 (+)
trnar-ucu_11 NA coding downstream 258732 9884513 ~ 9884604 (+)
si:ch211-137a8.4 LOC103372141,LOC107102523,LOC105915351,LOC101172006,LOC106961384,LOC103378353 coding downstream 430213 10055994 ~ 10119839 (+)
LOC120550666 LOC105915347 coding downstream 733608 10359389 ~ 10376811 (+)
G15577 NA non-coding upstream 3403 9432362 ~ 9599857 (+)
G15619 NA non-coding upstream 13117 9589607 ~ 9590143 (+)
G15637 NA non-coding upstream 66667 9533530 ~ 9536593 (+)
G15636 NA non-coding upstream 70803 9531026 ~ 9532457 (+)
G15635 NA non-coding upstream 76030 9526584 ~ 9527230 (+)
G15653 NA non-coding downstream 2026 9627807 ~ 9630249 (+)
G15660 NA non-coding downstream 38220 9664001 ~ 9664312 (+)
G15662 NA non-coding downstream 54386 9680167 ~ 9680904 (+)
G15666 NA non-coding downstream 59235 9685016 ~ 9685361 (+)
G15668 NA non-coding downstream 66622 9692403 ~ 9693478 (+)
serp1 NA other upstream 117413 9411490 ~ 9485847 (+)
G15628 NA other upstream 144043 9458478 ~ 9459217 (+)
G15605 NA other upstream 225056 9374154 ~ 9378204 (+)
G15572 NA other upstream 248632 9272899 ~ 9354628 (+)
G15565 NA other upstream 480968 9113842 ~ 9122292 (+)
LOC120551159 fam13c other downstream 5610 9631391 ~ 9652831 (+)
G15642 NA other downstream 19356 9645137 ~ 9668479 (+)
LOC120551195 NA other downstream 240929 9866710 ~ 10003372 (+)
G15712 NA other downstream 376469 10002250 ~ 10003595 (+)
zgc:101731 LOC106580895,LOC100194580,LOC103372138 other downstream 762451 10388232 ~ 10505338 (+)

Expression


Co-expression Network