LOC120547915 (clstn2)


Basic Information

Item Value
gene id LOC120547915
gene name clstn2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 18892806 ~ 19141693 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783743.1
catctctctcctccccgtGACGTCGCGCGGTCTGGTCCCGGGGTGCTTTGCTCTCCAGTCCCGTCTCAGCAGAAACCACTTCAGTTGCTGCCTCGTCCGTCCATCCACACAGCCAGCGTGCAACGTGCGCGTTACGGTGCGGCGAGGTGCGTTACGGGCACCTTTCCTTCTTCTACTCCACGCTGCCTGTCTTGTCCCACATACCAGTGAACTGTTTCCACACTCCGcttgaagagagaggagagaaccTGAGGCGTTGAATAAATAGGGAGAGGGCGGAAAGGAGAAGGACacggagagagtgtgtgagaaagagaagaaaaagaaagagaagaggagagaggtcGCCCTGGTCGCTCTACTTCCCCGAGCTGAATCTCTACCGAGAAGATGCTGAGACTAGCCGGCGTGTTGGCTGTAGTGACTCTGGGGTTGAGCGCCGCTCACACCAAAGTAAATAAGCACAAACCTTGGATTGAAACATCATACCATGGGGTGATCACTGAAAACACTGATGTTGTTCTGCTAGATCCTCCTCTGGTGGCCCTGGACAAAGACGCTCCCATCCCCTACGCAGGGGAGATCTGTGCATTCAACATCCACGGGCTGGAGGCTCCGTTCGAGGCAGTGGTGCTCAATGGTACGTCTGGCGAGGGCCAGCTGAGGGCCCGCGGCTTGGTGGACTGCGAGCTGCAGAAGGAATACACCTTTATCATCCAGGCTCACGACTGTGGATCTGGCCCCGGGGGCACGGAGGGCAAGAAGTCCCATAAGGCGGTGGTGCACATTCAGGTCAACGATGTGAATGAGTTTGCCCCGGTGTTTCGGGAGCCCCAGTACCGAGCCGCGGTGACGGAGGGCAAGATTTATGACAGCATCCTGCAGGTGGAGGCCACTGACCAGGACTGCTCCCCACAGTACAGCCAGATCTGTAACTACCAGATCACCACCACCAACACACCTTTCGCTATAGATCGCAACGGTAACATCCGGAACACTGAGAAGCTGAGCTATGACCGGCAGCAGCTGTACAAGATCCAGGTCACAGCCTGGGACTGCGGCCAGAAGAGAGCCTTGCACAGCGTCCCTGTCCACATTGACGTCAAGCCTGTCTGCAAGCCTGGCTGGCAAGATTGGAGTAAGCGAGTGGACTATGAGCCAGGAACAGGAAGTAAGCAGCTGTTTCCTAAAATGCACCTGGAGACCTGTGGCGGACCGCTGTCGTCAGTGAGGACCACAGTGGAGCTACAGACCAGCCACATTGGAAAAGGCTGTGACCGCGAGACCTATTCTGAGAAATCTCTACAGAAACTCTGTGGGGCCTCTTCGGGCAGCACTGACCTTCTGCCTGCCCCCAGCGCTGCCACCAACTGGACAGCTTCCCTTGTGACTGACAGCGGCAGGGACAGTGACTTGATCTTCAGGTTTGATGGTCATCAGGCAGCTAAAATCCCAGACTGGGTGGTACCCCAGAATCTGACAGACCAGTTCACCATAGCAACCTGGATGAAGCATGGACCCAGTCCTGGTCTCAGAGCTGAGAAGGAGACTCTACTCTGTAACTCTGACAAGACTGAGATGAACCGTCATCACTATTCCCTGTATGTCCATAATTGCCGCCTGGTGTTCCTGCTGAGGAGAGACTTCACCCAGGTGGACACCTTCAGACCAGCTGAGTTCCACTGGAAACTGGAGCAGATCTGTGACAAGGAGTGGCATTACTACGTTATCAACGTGGAGTTCCCAGTGGTGACGCTCTATGTGGACGGAGTAACCTACGACCCCTACCTGGTGACTGACGACTGGCCCATCCACCCCTCACAGATTGACGTGCAGCTCACAGTCGGTGCCTGCTGGCAAGgtggggAGGTGACCAAGCCGTGGTTCACTCAGTACTTCCGGGGCAGCCTTTCTGGATTGACCATCCGACCGGGGAAGATCGAAAGTCAGAAAGTAATTTCTTGTCTGCAGGCCTGCAAAGAAGGACTGGACATCAACTCCCTCGAGAGTCTGGATAAGAGCATAAAGTTTCACTTTAACCCAGCACAGTCTATGTTGGTAATGGAGGGAGAGGACTTGGAAAACATGAATGCTGCTGTGAGGAAAGTTTCCTACATAAACTCTCGTCAGTTTCCCACACCAGGCATCCGACGTCTGCACATCTCCACTGCCGTCCAGTGTTTTGGTGAAGACACTTGTATCACCATCCCAGACATCGATGCAGTGGTGATGGTGTTGCAGCCCAGTGAGCCCAGGATAACCATCACCGGAGTGGAGAGACTGAATCAGCCGGCCTCCGACCTCAGAGCGCCAGGCGGCACAGCTCTGTTCCAGGACCTCCACATCATCAGCACAGTCACCAGGGCAGACGCCACCGCACATCACACAGcacatCGACCCGGGGTGCTGGAGGAGATTATTCATAACTTGGACTACTGTGATGTCCTGGTGTTGGGGGAGGAGCTAGTGCCAGAGCAGGAGTCTCTCCAACTGCAGCGCCGCGCTCTGCTCGGAAAACACCTCGACGCCACTAACTCCACTTCTGGCATGTCCATATACGGTGTGGACTCCATGTCCAACTATGAACAGGTGATCCGACAGGTGCGTTACTATAACTGGCGGCCTGGACAACTAACAGAGAGAAGGTTTCGCCTCACCTGCTCGGAGCTCAATGGACGCTACACCAGCAATGAGTTCAACCTCGAGGTGAGCGTACTGCACAGTTCAGAAGCAGGGGAGCATGTCAATCACATGGTAGCCCCGCCTCAGTACATGCAGGTGGTCCACCATCCATCCATGATTCATGACCTGTACCCCAGCCACAGCTCAGCGATGCCGAGTGCTGCCACCGTGGTAATTGTGATGTGTATCGCTGCTCTGGTGGTGGTTGTGGTGCTGGGCATCTACCGCATCCATCTGACCCACCAGCAGGAGGTCAAACTGGCGGAGACAGCCAAAGAGGCAGACGTGACCTGGGATGACTCGGCTCTGACGATCACGGTCAACCCGATGGAGAACCTGGAGGAGCCCCAGGCTGCAGAGGAGGAGGccagtgaggaggaggaggaagaagaagaggaggaggaggaagatgaagaggaggaggatgacatCACCAGCGCTGAGTCAGACGACAGCGAGGAGGAAGTGGACGTCCAGCTACCCAGGATGCAACGCCCAAACAAGAAGGGCCTAAACTGGGACAAAACAACGATATCTTATTGAAAACACACAATTcacagtcactcacacacacacacattctgcaaCACGTCCATACTGAAACCTCAAATCAGATGGTAGAAACAAAAAGACTTTATGTGATGTTGATACTCTAAAAATGAGGTAATATCTCCCCCTACTGGAAGACTTCACTGAACTACACATTGTGCAATGATTTAACCTTAGCCTTGTCAGAAAACACCCCGTTTTATACAGCTGATAAGAAAAAATATGACACTCAAGCTGCTCGTCAATCAAATGGCTTTCATTCTAGGGACAGCTCGCCAAATTTCGGTCCTCGCCTGAGAGCTTTTATCTCTATCTGTCCCATTACAGTCTACACCACAACTACGATCTTTAGTGAAATGAAGTGGTTGGAATCTCATGTTGTCAATGAAACCCTGCACCGTACATTCAGTTTGATGTGACACCTGTAGTCCACAGTGAGATTTCTCATGTCCCATGAAAATGCAAAACAGTCTTTATTTACTGTAAGAAAACTGAGTTGCAAAAGTAAAGAAACTGACtatttttttggtttgtatACTTTATGTTATTAATCAGTCTTTATTCTAGCCTACGTGGCACAGCCAGGTGATTTTACAGAAATAGCATATTTTCAATggtactcaaaaaaaaaaaa

Function

symbol description
clstn2 Predicted to enable calcium ion binding activity. Predicted to be involved in positive regulation of synapse assembly and positive regulation of synaptic transmission. Predicted to be located in postsynaptic density. Predicted to be active in cell surface; glutamatergic synapse; and postsynaptic membrane. Predicted to be integral component of postsynaptic density membrane.

NR:

description
PREDICTED: calsyntenin-2

GO: NA

KEGG:

id description
K22660 CLSTN2; calsyntenin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783743.1 True 3865 mRNA 0.52 17 18892806 19141693

Neighbor

gene id symbol gene type direction distance location
pxylp1 pxylp1 coding downstream 95723 18776173 ~ 18797083 (-)
sgpp2 sgpp2,LOC103365078 coding downstream 478665 18398801 ~ 18414141 (-)
acsl3a acsl3 coding downstream 522349 18340612 ~ 18370457 (-)
kcne4 kcne4 coding downstream 555291 18335196 ~ 18337515 (-)
scg2a NA coding downstream 585279 18304115 ~ 18307527 (-)
LOC120552541 NA coding upstream 23695 19165388 ~ 19166277 (-)
LOC120552522 NA coding upstream 26354 19168047 ~ 19169126 (-)
LOC120552531 NA coding upstream 48801 19190494 ~ 19191790 (-)
mrps22 mrps22,LOC103373397 coding upstream 110643 19252336 ~ 19257822 (-)
her13 LOC103373083,LOC104919393 coding upstream 289666 19431359 ~ 19434295 (-)
G17964 NA non-coding downstream 143405 18749198 ~ 18749401 (-)
G17936 NA non-coding downstream 299133 18592975 ~ 18593673 (-)
G17917 farsb,LOC102796683,LOC102210931 non-coding downstream 509267 18383159 ~ 18383539 (-)
G17782 NA non-coding downstream 1043787 17844434 ~ 17849019 (-)
G17745 NA non-coding downstream 1136374 17756168 ~ 17756432 (-)
G17986 NA non-coding upstream 13269 19154962 ~ 19155251 (-)
G18002 NA non-coding upstream 89226 19230919 ~ 19234457 (-)
G18127 NA non-coding upstream 241710 19383403 ~ 19405361 (-)
G18155 NA non-coding upstream 314520 19456213 ~ 19542671 (-)
LOC120573122 NA non-coding upstream 396682 19538375 ~ 19541130 (-)
LOC120545639 eif4g1 other downstream 669913 18179013 ~ 18222893 (-)
zgc:165508 fam131a,LOC102799247 other downstream 740838 18127466 ~ 18151968 (-)
LOC120552194 NA other downstream 1002145 17799999 ~ 17890661 (-)
xaf1 LOC107094331 other downstream 1413903 17472947 ~ 17478903 (-)
G17597 NA other downstream 1961812 16848161 ~ 16930994 (-)
fbxo46 fbxo46,LOC102786997 other upstream 559534 19701227 ~ 19717307 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other upstream 659058 19800751 ~ 19810130 (-)
LOC120547993 NA other upstream 995379 20137072 ~ 20141538 (-)
si:ch1073-340i21.1 NA other upstream 1952484 21094177 ~ 21097201 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other upstream 2095495 21237188 ~ 21261923 (-)

Expression


Co-expression Network