arcn1b (arcn1,LOC103368493)


Basic Information

Item Value
gene id arcn1b
gene name arcn1,LOC103368493
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 16564562 ~ 16579654 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039785396.1
TCTATCGCTGCTCTTCCGGTGGAGACGTGGCTCTGTACTGCTGCCATATtgacgctagctagctaacaatcACACAACTTGGAGTCAGCTGTATATCTGCACCTTGCTATTCTAGAGTGACTAGAAATCACAAAAATCAAGAAACACGAGAGACGGAAGATCGTCCTACCATAGAGAGAGACCAAAATGGTGCTGTTGGCAGCGGCGGTGTGCACCAAGGCCGGCAAGGCCATTGTATCGCGGCAGTTTGTTGAAATGACCCGGACCCGTATTGAGGGTCTTCTGGCTGCATTCCCTAAACTGATGAACATGGGCAAGCAGCACACCTTTGTGGAAACAGACAGTGTTCGCTACGTGTACCAGCCACTGGAGAAACTCTACATGGTCCTCATCACTACCAAGAACAGCAACATCCTGGAAGACTTGGAGACACTCAGACTCTTCTCCCGTGTGATCCCAGAGTACTGTCGTGTGCTGGAGGAAAGCGAAATATCGGAGCACTGCTTTGACCTGATCTTTGCCTTCGATGAGATTGTGGCACTAGGCTACAGAGAGAACGTCAACCTGGCTCAGATCCGCACCTTCACAGAGATGGACTCTCATGAGGAGAAGGTTTTCCGTGCTgtcagagagACCCAGGAGAGAGAGGCCAAggcagagatgaggaggaaggcCAAGGAGCTGCAGCAGGCTAGAAGGGATGCTGAGCGCTCTGGAAAGAAGGTGCCAGCTTTCGGCGGCTTTGGCAGCGGCGGCATGACCAGCGTCTCGTCTGGGTCCATCATTACAGACACCCTCGTCGAGCCTGAGAAGCCCAAGATCACACCAGCTACAGTCAGACCAAGTGGACCCAGTAAGGCCCTGAAACTGGGTGCTAAAGGGAAAGAGGTGGACAACTTTGTCGACAAGCTCAAGTCCGAGGGTGAAACCATCATGCCCACCTCAGGAAAGAGAGGCTCAGATGTATCTAAAGTTCTACCACCACCAGTCAATGTGGAGAGTGTACATCTGCGTGTGGAGGAGAAGATCTCGCTGACTTGTGGACGTGACGGCGGCCTACAGAACATGGAGCTGCTGGGCATGATCACGCTCCGAGTCACAGACGAAAAGAGCGGACGCATCCGCCTCATCATCAACAACAATGACAACAAAGGATTGCAACTGCAAACCCATCCCAATGTGGACAAGAAGTTGTTCACTGCTGACTCAGTGATTGGCCTGAAAAACCCAGAGAAGTCCTTCCCTCTCAACAATGACGTTGGTGTGCTGAAGTGGAGACTACAGTCCACAGACGAGTCCCTCATACCTCTAACCATAAACTGCTGGCCTTCAGAGAGTGGTAGTGGCTGTGATGTCAACATCGAATACGAGCTGCAGGAGGAGAGCCTTGAGCTCAACGATGTGGTCATCAGCATTCCTGTACCGTCTGGTGTGGGAGCCCCTGTGATTGGTGATCTGGATGGCGAGTACAAACATGACAGCAGGCGAAACATTCTGGAGTGGTGCCTACCGGTCATCGATGCCAACAACAAGACCGGCAGCCTGGAGTTCAGCATCGCCGGACAGCCCAATGACTTCTTCCCTATCAATGTGTCCTTTGTGTCCAAGCGCAACTACTGCGACATCCAGGTTACCAAAGTGACTCACGTAGATGGCGACAGCTCCATTAGATTCTCTTCAGAAACCTCCTTTGTTGTCGACAAATATGAAATCCTGTAAAGAATATTCAAAGAAAAcgtcaaaatcaaaaaaaaatcaccaacaaaaaaaaaagtccaaatctatGCTTCAGAGAAAGATTGAAGTTTTCTTGCCTGCCCACCCTGTATACTATTTCAGAGACTGTGTACATCGACAGGACTACGTCAGCCCTCTGGCAAAGCCTCTTCCTGTGGTGGAGCAGAGCAGTGGTGGTGTATTTATATGTTTGTATGAGAGAGAGGATCATCTATATATAGAGTTAATTGAACAGGAAAacccaacaaacacacaaaaaaaa

Function

symbol description
arcn1 Enables RNA binding activity. Predicted to be involved in Golgi localization; endoplasmic reticulum to Golgi vesicle-mediated transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within several processes, including Golgi vesicle transport; adult locomotory behavior; and cerebellar Purkinje cell layer maturation. Located in membrane.

NR:

description
PREDICTED: coatomer subunit delta

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K20471 COPD, ARCN1, RET2; coatomer subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039785396.1 True 1999 mRNA 0.50 10 16564562 16579654

Neighbor

gene id symbol gene type direction distance location
phldb1b phldb1 coding downstream 4494 16441097 ~ 16560068 (-)
atf5b LOC103356433,LOC104926458,LOC104965607 coding downstream 178494 16381343 ~ 16386068 (-)
LOC120553834 NA coding downstream 227937 16319497 ~ 16336625 (-)
LOC120547208 adamts15 coding downstream 355586 16190131 ~ 16208976 (-)
il4i1 il4i1 coding downstream 491659 16064444 ~ 16072903 (-)
LOC120549238 NA coding upstream 12665 16592319 ~ 16596088 (-)
ubash3bb ubash3b,LOC104926453 coding upstream 20140 16599794 ~ 16643883 (-)
LOC120548132 LOC104926451,LOC103375127,LOC106906251,LOC103154322 coding upstream 64466 16644120 ~ 16655340 (-)
usf1 usf1 coding upstream 75836 16655490 ~ 16664682 (-)
LOC120551331 NA coding upstream 368102 16947756 ~ 16949836 (-)
G17499 NA non-coding downstream 145820 16417295 ~ 16418742 (-)
G17466 NA non-coding downstream 163726 16400623 ~ 16400836 (-)
G17389 NA non-coding downstream 516546 16016922 ~ 16048016 (-)
LOC120549843 NA non-coding downstream 850473 15713132 ~ 15714089 (-)
G17264 NA non-coding downstream 921572 15642003 ~ 15642990 (-)
G17571 NA non-coding upstream 117159 16696813 ~ 16698009 (-)
G17579 NA non-coding upstream 131115 16710769 ~ 16766469 (-)
G17583 NA non-coding upstream 140564 16720218 ~ 16935713 (-)
G17587 NA non-coding upstream 141920 16721574 ~ 16755316 (-)
G17588 NA non-coding upstream 143753 16723407 ~ 16739776 (-)
sdhdb sdhd other downstream 504154 16046008 ~ 16060408 (-)
G17287 NA other downstream 845521 15695554 ~ 15719041 (-)
lyrm9 lyrm9 other downstream 913515 15646641 ~ 15651047 (-)
si:ch1073-145m9.1 LOC104930674,LOC104957430,LOC102079100,LOC108239365,LOC105418711 other downstream 1238763 15318840 ~ 15325799 (-)
caln1 caln1,LOC103372560,LOC107097061 other downstream 2241729 14247928 ~ 14322833 (-)
G17597 NA other upstream 268507 16848161 ~ 16930994 (-)
xaf1 LOC107094331 other upstream 893293 17472947 ~ 17478903 (-)
LOC120552194 NA other upstream 1220345 17799999 ~ 17890661 (-)
zgc:165508 fam131a,LOC102799247 other upstream 1547812 18127466 ~ 18151968 (-)
LOC120545639 eif4g1 other upstream 1599359 18179013 ~ 18222893 (-)

Expression


Co-expression Network