yif1b (yif1b)


Basic Information

Item Value
gene id yif1b
gene name yif1b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 28141543 ~ 28147451 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039785902.1
TGAATGACTCCACTCCAACTTCCTGTGCAGCTTTTGCTAACTATAGCAACTGCATCTCAGTAGAGTTGGTCAACTGACGGCTACTGCTACCATCAAGTTAGTCCAAATGGATTACACTTCAACTCAAAGTGGGTTCAGACAGCGTAAGTTACAGCCTAATATGCGTCTAAGGACTAGTTTGGTGGATGGTTCAGAAGGCAGCCAGCTGTTTGAGGATACGAGTGGAGCTGCATCTGGACCGCAGAAAGGGTTCAGTAACCAGCAGGCCGGGCctcaagcagcagcagcagcagcagcaggatttCCTGGCCAGTCTATCCTGTCAGACCCCATGTCTAACTTGGCCATGGCATATGGCAGCTCACTGGCGTCCCAGGGAAGGGAAATGGTAGACAAGAATCTGGACAGGTTCATCCCAATTTCTAAGCTGAAATATTACTTTGCCGTGGACACAGTGTACGTGGGGAAGAAGCTGGGCCTTCTTGTATTCCCTTACATGCACGATaacTGGGAGGTGAGCTACCAGCAGGACACTCCTGTGGCTCCACGCTTTGATGTGAACGCTCCTGATCTCTACATTCCCGCCATGGGCTTCATAACATACATCCTGGTGGCTGGACTTGCCCTCGGCACACAAAACAAGTTTTCTCCGGAGCTGCTGGGAGTTCAGGCCAGCTCAGCGTTGGTGTGGCTGATCATGGAAGTCCTGGCGGTCCTGCTGTCGCTCTACCTTGTGACCGTAAACACTGACCTCACGACCATAGACCTACTGGCTTTTTCTGGCTACAAATATGTTGGGATGATTGTAGGGGTCGTAGCAGGCCTGCTGTTTGGGAGGCCGGCATACTATCTCTCTCTGCTGTGGTGCTGTGTTGCCATCTTTGTCTTTATGATCCGCACGCTGCGTCTGAAGCTGTTATCTGAGGCGGCGGCAGAGGGAAGGCTGGTGAGAGGAGCCAGAAACCAGCTGAGGATGTACCTCACCATGTCTATAGCAGCAGCACAACCCATCTTCATGTTCTGGCTCACCTACCACCTCAtcagataaaacacacacacactcattttgTAGAAGATGAACTTGGCTGTCCAAAGGCCATCGCACCCCCTTAAAAACActcaagaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccaaagaaGCTGGACTTGGATGAAACACACAACAGCCATAGTAGTCTGGAAAATATCACAAGACTCCCTCCATGTATTCATGGAGCAAAACAACACATGCTACAAGACGATTAGGAGAGGAAGTGAGGCATTGCTGCCTTCTCTCTCACAGCACAGCCCCAAGTCAttagttttgcctttttttttgtgtcttttttttatgtaatgtcTTCAGAAATGTGTAGCAAGAGCAAACTGCTTCAAGTTGTTTTTCTATACTTTGTAATTATTGGTTAATTATGTTTTTAGGAatatttatgtatgttttgtgtATAGAAAAATTATTATTGCAGATGTTGCTCATGTGAGTTTTCTGAGCCGACCAAGAAAGCAAACTAACCTCACACAAACCGTCCATTAAATGACGAGAAAGAAGTCAAATTCAGGTTTAAAGGTGATTTAACTGGTTTGGGTGTTTGACTAGAATGACCTTTTCCCTGGTGCTCATGTTTATTTCATGGCTGAGAGAAATATGTGTTCTGTCATCATTGGATCTGGAAACAAGGGTTATGTaactggtgtgtgtgagtgtggctGCAGTACCACCTCTGTTTTATCTGTTTAATCTTTTTGTATGCGCTTTGATACATGTTCTTTGCTGCCTGACAACTCTTGAATAGAAATATCAACTGTGTTTAAGCCACGACATCAGGGCGTAGACCTCACAGTGAAATGAGTTGACTTTGATATCCTTTTTAAATACAAAGTAAATTATTTACTGCTTTTCATATTTAAAGTCTGATGGAATAAAGGAAGGGAAGAGATGGTCTGTTCTGTGAAAATTGTTTGTCTCTGAAATACTTGAAATATTTTAACGTTGAAAAATACTTTCTTGTGCTTCAATGTGCTTGTAAATCCTCCCATGCCTCAGCTGTTTTTTATGTAGCCAATGTTGACTCAAACCAGGGTAGGATTCACATTCACTTAAATTAATTCAGGAAACTtcaaaaatctggatttttgttttttgcatttcCCTCAGATGGAACTTTATTATTGATAAATGCTAAAACACTAACCTCCGTTAACTGAGGTGTCAATAAAACCTTCCAAATATTTTGACAAAGTGCTCATTTACATAGGATTTCTTAAATTGCAACATCTCATTACGAATAACTCATTCCTTACATACATGTAGCAGGTAATTCAAACACCTATTTCAGGATTAATCGTGAATGGATCCCATCTGACTGTCAAAGTAGGCTGTAAGCAACCTATCGAGTCAAGCCACTGAAATGATATGACGACTGATAAATAAAGTCTGACTGATGGAGCTGCTGAA
>XM_039785910.1
TGAATGACTCCACTCCAACTTCCTGTGCAGCTTTTGCTAACTATAGCAACTGCATCTCAGTAGAGTTGGTCAACTGACGGCTACTGCTACCATCAAGTTAGTCCAAATGGATTACACTTCAACTCAAAGTGGGTTCAGACAGCAGCCTAATATGCGTCTAAGGACTAGTTTGGTGGATGGTTCAGAAGGCAGCCAGCTGTTTGAGGATACGAGTGGAGCTGCATCTGGACCGCAGAAAGGGTTCAGTAACCAGCAGGCCGGGCctcaagcagcagcagcagcagcagcaggatttCCTGGCCAGTCTATCCTGTCAGACCCCATGTCTAACTTGGCCATGGCATATGGCAGCTCACTGGCGTCCCAGGGAAGGGAAATGGTAGACAAGAATCTGGACAGGTTCATCCCAATTTCTAAGCTGAAATATTACTTTGCCGTGGACACAGTGTACGTGGGGAAGAAGCTGGGCCTTCTTGTATTCCCTTACATGCACGATaacTGGGAGGTGAGCTACCAGCAGGACACTCCTGTGGCTCCACGCTTTGATGTGAACGCTCCTGATCTCTACATTCCCGCCATGGGCTTCATAACATACATCCTGGTGGCTGGACTTGCCCTCGGCACACAAAACAAGTTTTCTCCGGAGCTGCTGGGAGTTCAGGCCAGCTCAGCGTTGGTGTGGCTGATCATGGAAGTCCTGGCGGTCCTGCTGTCGCTCTACCTTGTGACCGTAAACACTGACCTCACGACCATAGACCTACTGGCTTTTTCTGGCTACAAATATGTTGGGATGATTGTAGGGGTCGTAGCAGGCCTGCTGTTTGGGAGGCCGGCATACTATCTCTCTCTGCTGTGGTGCTGTGTTGCCATCTTTGTCTTTATGATCCGCACGCTGCGTCTGAAGCTGTTATCTGAGGCGGCGGCAGAGGGAAGGCTGGTGAGAGGAGCCAGAAACCAGCTGAGGATGTACCTCACCATGTCTATAGCAGCAGCACAACCCATCTTCATGTTCTGGCTCACCTACCACCTCAtcagataaaacacacacacactcattttgTAGAAGATGAACTTGGCTGTCCAAAGGCCATCGCACCCCCTTAAAAACActcaagaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccaaagaaGCTGGACTTGGATGAAACACACAACAGCCATAGTAGTCTGGAAAATATCACAAGACTCCCTCCATGTATTCATGGAGCAAAACAACACATGCTACAAGACGATTAGGAGAGGAAGTGAGGCATTGCTGCCTTCTCTCTCACAGCACAGCCCCAAGTCAttagttttgcctttttttttgtgtcttttttttatgtaatgtcTTCAGAAATGTGTAGCAAGAGCAAACTGCTTCAAGTTGTTTTTCTATACTTTGTAATTATTGGTTAATTATGTTTTTAGGAatatttatgtatgttttgtgtATAGAAAAATTATTATTGCAGATGTTGCTCATGTGAGTTTTCTGAGCCGACCAAGAAAGCAAACTAACCTCACACAAACCGTCCATTAAATGACGAGAAAGAAGTCAAATTCAGGTTTAAAGGTGATTTAACTGGTTTGGGTGTTTGACTAGAATGACCTTTTCCCTGGTGCTCATGTTTATTTCATGGCTGAGAGAAATATGTGTTCTGTCATCATTGGATCTGGAAACAAGGGTTATGTaactggtgtgtgtgagtgtggctGCAGTACCACCTCTGTTTTATCTGTTTAATCTTTTTGTATGCGCTTTGATACATGTTCTTTGCTGCCTGACAACTCTTGAATAGAAATATCAACTGTGTTTAAGCCACGACATCAGGGCGTAGACCTCACAGTGAAATGAGTTGACTTTGATATCCTTTTTAAATACAAAGTAAATTATTTACTGCTTTTCATATTTAAAGTCTGATGGAATAAAGGAAGGGAAGAGATGGTCTGTTCTGTGAAAATTGTTTGTCTCTGAAATACTTGAAATATTTTAACGTTGAAAAATACTTTCTTGTGCTTCAATGTGCTTGTAAATCCTCCCATGCCTCAGCTGTTTTTTATGTAGCCAATGTTGACTCAAACCAGGGTAGGATTCACATTCACTTAAATTAATTCAGGAAACTtcaaaaatctggatttttgttttttgcatttcCCTCAGATGGAACTTTATTATTGATAAATGCTAAAACACTAACCTCCGTTAACTGAGGTGTCAATAAAACCTTCCAAATATTTTGACAAAGTGCTCATTTACATAGGATTTCTTAAATTGCAACATCTCATTACGAATAACTCATTCCTTACATACATGTAGCAGGTAATTCAAACACCTATTTCAGGATTAATCGTGAATGGATCCCATCTGACTGTCAAAGTAGGCTGTAAGCAACCTATCGAGTCAAGCCACTGAAATGATATGACGACTGATAAATAAAGTCTGACTGATGGAGCTGCTGAA
>XM_039785915.1
TGAATGACTCCACTCCAACTTCCTGTGCAGCTTTTGCTAACTATAGCAACTGCATCTCAGTAGAGTTGGTCAACTGACGGCTACTGCTACCATCAAGTTAGTCCAAATGGATTACACTTCAACTCAAAAGCCTAATATGCGTCTAAGGACTAGTTTGGTGGATGGTTCAGAAGGCAGCCAGCTGTTTGAGGATACGAGTGGAGCTGCATCTGGACCGCAGAAAGGGTTCAGTAACCAGCAGGCCGGGCctcaagcagcagcagcagcagcagcaggatttCCTGGCCAGTCTATCCTGTCAGACCCCATGTCTAACTTGGCCATGGCATATGGCAGCTCACTGGCGTCCCAGGGAAGGGAAATGGTAGACAAGAATCTGGACAGGTTCATCCCAATTTCTAAGCTGAAATATTACTTTGCCGTGGACACAGTGTACGTGGGGAAGAAGCTGGGCCTTCTTGTATTCCCTTACATGCACGATaacTGGGAGGTGAGCTACCAGCAGGACACTCCTGTGGCTCCACGCTTTGATGTGAACGCTCCTGATCTCTACATTCCCGCCATGGGCTTCATAACATACATCCTGGTGGCTGGACTTGCCCTCGGCACACAAAACAAGTTTTCTCCGGAGCTGCTGGGAGTTCAGGCCAGCTCAGCGTTGGTGTGGCTGATCATGGAAGTCCTGGCGGTCCTGCTGTCGCTCTACCTTGTGACCGTAAACACTGACCTCACGACCATAGACCTACTGGCTTTTTCTGGCTACAAATATGTTGGGATGATTGTAGGGGTCGTAGCAGGCCTGCTGTTTGGGAGGCCGGCATACTATCTCTCTCTGCTGTGGTGCTGTGTTGCCATCTTTGTCTTTATGATCCGCACGCTGCGTCTGAAGCTGTTATCTGAGGCGGCGGCAGAGGGAAGGCTGGTGAGAGGAGCCAGAAACCAGCTGAGGATGTACCTCACCATGTCTATAGCAGCAGCACAACCCATCTTCATGTTCTGGCTCACCTACCACCTCAtcagataaaacacacacacactcattttgTAGAAGATGAACTTGGCTGTCCAAAGGCCATCGCACCCCCTTAAAAACActcaagaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccaaagaaGCTGGACTTGGATGAAACACACAACAGCCATAGTAGTCTGGAAAATATCACAAGACTCCCTCCATGTATTCATGGAGCAAAACAACACATGCTACAAGACGATTAGGAGAGGAAGTGAGGCATTGCTGCCTTCTCTCTCACAGCACAGCCCCAAGTCAttagttttgcctttttttttgtgtcttttttttatgtaatgtcTTCAGAAATGTGTAGCAAGAGCAAACTGCTTCAAGTTGTTTTTCTATACTTTGTAATTATTGGTTAATTATGTTTTTAGGAatatttatgtatgttttgtgtATAGAAAAATTATTATTGCAGATGTTGCTCATGTGAGTTTTCTGAGCCGACCAAGAAAGCAAACTAACCTCACACAAACCGTCCATTAAATGACGAGAAAGAAGTCAAATTCAGGTTTAAAGGTGATTTAACTGGTTTGGGTGTTTGACTAGAATGACCTTTTCCCTGGTGCTCATGTTTATTTCATGGCTGAGAGAAATATGTGTTCTGTCATCATTGGATCTGGAAACAAGGGTTATGTaactggtgtgtgtgagtgtggctGCAGTACCACCTCTGTTTTATCTGTTTAATCTTTTTGTATGCGCTTTGATACATGTTCTTTGCTGCCTGACAACTCTTGAATAGAAATATCAACTGTGTTTAAGCCACGACATCAGGGCGTAGACCTCACAGTGAAATGAGTTGACTTTGATATCCTTTTTAAATACAAAGTAAATTATTTACTGCTTTTCATATTTAAAGTCTGATGGAATAAAGGAAGGGAAGAGATGGTCTGTTCTGTGAAAATTGTTTGTCTCTGAAATACTTGAAATATTTTAACGTTGAAAAATACTTTCTTGTGCTTCAATGTGCTTGTAAATCCTCCCATGCCTCAGCTGTTTTTTATGTAGCCAATGTTGACTCAAACCAGGGTAGGATTCACATTCACTTAAATTAATTCAGGAAACTtcaaaaatctggatttttgttttttgcatttcCCTCAGATGGAACTTTATTATTGATAAATGCTAAAACACTAACCTCCGTTAACTGAGGTGTCAATAAAACCTTCCAAATATTTTGACAAAGTGCTCATTTACATAGGATTTCTTAAATTGCAACATCTCATTACGAATAACTCATTCCTTACATACATGTAGCAGGTAATTCAAACACCTATTTCAGGATTAATCGTGAATGGATCCCATCTGACTGTCAAAGTAGGCTGTAAGCAACCTATCGAGTCAAGCCACTGAAATGATATGACGACTGATAAATAAAGTCTGACTGATGGAGCTGCTGAA

Function

symbol description
yif1b Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be active in COPII-coated ER to Golgi transport vesicle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Predicted to be integral component of Golgi membrane. Orthologous to human YIF1B (Yip1 interacting factor homolog B, membrane trafficking protein).

NR:

description
PREDICTED: protein YIF1B isoform X1

GO: NA

KEGG:

id description
K20362 YIF1; protein transport protein YIF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039785902.1 True 2541 mRNA 0.43 8 28141543 28147451
XM_039785910.1 False 2532 mRNA 0.43 8 28141543 28147451
XM_039785915.1 False 2517 mRNA 0.43 8 28141543 28147451

Neighbor

gene id symbol gene type direction distance location
trnam-cau_1 NA coding downstream 75146 28066325 ~ 28066397 (-)
p2ry2.1 p2ry2 coding downstream 95458 28041449 ~ 28046085 (-)
kbtbd3 kbtbd3 coding downstream 260729 27872415 ~ 27880814 (-)
alkbh8 alkbh8 coding downstream 277020 27850024 ~ 27864523 (-)
gucy1a2 gucy1a2,LOC102775648 coding downstream 321430 27771968 ~ 27820113 (-)
trnar-acg NA coding upstream 3129 28150580 ~ 28150652 (-)
bloc1s3 bloc1s3 coding upstream 113150 28260601 ~ 28262791 (-)
zgc:114130 NA coding upstream 124227 28271678 ~ 28276819 (-)
zgc:162730 LOC103363970,LOC104955298,LOC104928501 coding upstream 155584 28303035 ~ 28306177 (-)
LOC120551494 NA coding upstream 290454 28437905 ~ 28460379 (-)
G20094 NA non-coding downstream 16815 28120715 ~ 28124728 (-)
G20093 NA non-coding downstream 21044 28119209 ~ 28120499 (-)
G20092 NA non-coding downstream 23254 28117718 ~ 28118289 (-)
G20091 NA non-coding downstream 24776 28115900 ~ 28116767 (-)
G20090 NA non-coding downstream 27239 28109762 ~ 28114304 (-)
LOC120549228 NA non-coding upstream 18571 28166022 ~ 28253080 (-)
G20183 NA non-coding upstream 192301 28339752 ~ 28340102 (-)
LOC120550084 NA non-coding upstream 622683 28770134 ~ 28776031 (-)
G20217 NA non-coding upstream 749584 28897035 ~ 28897994 (-)
G20289 NA non-coding upstream 885404 29032855 ~ 29034866 (-)
cwf19l2 cwf19l2 other downstream 293995 27824605 ~ 27847548 (-)
G19840 NA other downstream 1052479 27088606 ~ 27089064 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other downstream 1671647 26451380 ~ 26469896 (-)
LOC120570434 fam124b other downstream 1695608 26434281 ~ 26445935 (-)
LOC120570356 ypelc,ypel2,LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438,LOC107599611,LOC101078269,LOC104940871 other downstream 1806824 26307064 ~ 26334719 (-)
G20417 scarf1 other upstream 1299719 29447170 ~ 29448655 (-)
im:7138535 NA other upstream 1819978 29967429 ~ 29972350 (-)
rnf26 rnf26 other upstream 1940284 30087735 ~ 30091711 (-)
cbl cbl other upstream 2007442 30154893 ~ 30198071 (-)
arhgef12a arhgef12 other upstream 2421422 30568873 ~ 30618434 (-)

Expression


Co-expression Network