sst1.2 (LOC104933374,LOC103361206)


Basic Information

Item Value
gene id sst1.2
gene name LOC104933374,LOC103361206
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 5716270 ~ 5720289 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786321.1
GCCGCGCCACGGGGAGGAGCTTCGGGCTACAAAAGAGCAACACACCGAGGACCAGGACCAAAGACAAGCCCAGAAGCAGAACCAAAACCAGGACCAGCAGAAGATACCAGACCAGCAGACAgtATGCAGTACATCCGTTGTCCCGCCATCTTGCTTCTCGTGGCATTGGTCCTGTGCGGTCCAGCCGTTTCCTCACAGCCCGACAGAGACCAGGACCAGTACCAGAACCAGGACCtggagctggagctgctgcACCACAGGCTGCTGCAACGAGCTCGCAGCGCCGGACTTCTGTCACAAGAGTGGAGTAAACGTGCGGTGGAGGATCTGCTCGCTCAGATGGGTCTGCCAGAGGCCGACACCCAGCGGGAGGCTCAGGTTGTATCCatggaaaaaggagaaaaggtGAACCTGGAGCGGTCCGTCGACCCACCCAACAACCTGCCCCCCCGCGAACGCAAAGCCGGCTGCAAGAACTTCTACTGGAAGGGCTTCACTTCCTGTTAAAGCCCCGCCCAGCTGACCAACCGACCAATCCCAGATCATCTGGACTTCTCCGGAGCGACTGCAAGGACCAATCAGCAGCTGTCCAGCTGCAGTGTACCTGAATAATTAATGTAattatcaattaaaaaaaagata

Function

NR:

description
PREDICTED: somatostatin-2

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786321.1 True 642 mRNA 0.56 4 5716270 5720289

Neighbor

gene id symbol gene type direction distance location
col4a3 NA coding upstream 4411 5641654 ~ 5711859 (+)
LOC120549121 NA coding upstream 168937 5543291 ~ 5547333 (+)
LOC120572059 NA coding upstream 254760 5447146 ~ 5461510 (+)
LOC120571154 NA coding upstream 485825 5219650 ~ 5230445 (+)
LOC120571428 NA coding upstream 542825 5166211 ~ 5173445 (+)
sst1.1 LOC101485677,LOC102296407,LOC102206005 coding downstream 17849 5738138 ~ 5743105 (+)
LOC120545109 NA coding downstream 292559 6012848 ~ 6013786 (+)
LOC120545182 NA coding downstream 349136 6069425 ~ 6070366 (+)
LOC120545198 NA coding downstream 401768 6122057 ~ 6138120 (+)
LOC120545205 NA coding downstream 421178 6141467 ~ 6142387 (+)
G14376 NA non-coding upstream 80082 5635644 ~ 5636188 (+)
G14372 NA non-coding upstream 82554 5623676 ~ 5633716 (+)
G14353 LOC104946957 non-coding upstream 156816 5548955 ~ 5559454 (+)
G14359 NA non-coding upstream 184141 5531304 ~ 5532129 (+)
LOC120553302 NA non-coding upstream 329965 5383630 ~ 5386305 (+)
G14761 NA non-coding downstream 944 5721233 ~ 5721444 (+)
G14767 NA non-coding downstream 26252 5746541 ~ 5747066 (+)
G14772 NA non-coding downstream 49927 5770216 ~ 5770555 (+)
G14782 NA non-coding downstream 106053 5826342 ~ 5826680 (+)
G14788 NA non-coding downstream 199610 5919899 ~ 5920686 (+)
G14344 NA other upstream 187651 5510757 ~ 5528619 (+)
G14187 LOC107380983,LOC108250349,LOC108250351,LOC103477369,LOC103473932,LOC107835021,LOC106936810,LOC102294474,LOC102776571,LOC108229490,LOC103360213,LOC107834023,LOC103368570,LOC102214284,LOC102800009,LOC101480046,LOC101470105,LOC102792843 other upstream 299135 4801340 ~ 5417135 (+)
G14209 LOC102792843 other upstream 1188893 4500173 ~ 4527377 (+)
LOC120570718 LOC103473932 other upstream 1266440 4363666 ~ 4449830 (+)
rnf169 NA other downstream 672773 6393062 ~ 6404425 (+)
spcs2 spcs2 other downstream 687696 6407985 ~ 6417509 (+)
G15019 NA other downstream 1252556 6972845 ~ 6989396 (+)
G15173 LOC102077075 other downstream 1677812 7398101 ~ 7399141 (+)
G15234 NA other downstream 1771076 7491365 ~ 7492057 (+)

Expression


Co-expression Network