bckdha (bckdha,LOC102788451)


Basic Information

Item Value
gene id bckdha
gene name bckdha,LOC102788451
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 47215861 ~ 47225227 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786405.1
ATTGTGGTTGACACGACGTTTGTAGCTATTCAACCTGCCTGACAAGTGTGATTGTGGATATCAGTGCTGAAGACTGAAAAGCGCTCAAACGGTTATTGTTAGCTAGTTTTGTCACATAATTCTTACATATTTACAGAAGAATTTTAACATTCCTGACAAGCTATTAGCCGTGGACGGTCCTGATGGCGGCTGTGAGAAgtataaacaaaatgtatgGAGTATGTTTCCATGTTCGTCAGACGGCAGGACTGAAGGCATCGAGGCTGCTTCAACACAGAGCCTTCAGAGTCGGTGCTGTGCTGCGGCAGCAGCCCTTTGACTCGACACTGGAAAAGCCCCAGTTCCCCGGAGCCTCAGCCGAGTTTGTGGATCAGCTTGAGTTCATCCAGCCCAACGTCATCTCTGGGATCCCAGTGTATCGGGTGATGGACAGACAGGGAAACATCATCAACCCCTCTCAAGACCCTCAGCTCTCCAAAGAGACCGTTTTGAACTTTTACCAGAAGATGACTCTGCTGAACACCATGGACCGCATTCTTTATGAGTCCCAGAGACAGgGTCGCATCTCCTTCTACATGACCAACTATGGTGAGGAGGGGACACATATTGGTAGTGCTGCTGCTCTTGACCCAACCGACATAGTCTTCGGTCAATACAGAGAAGCTGGAGTGCTGATGTACCGGGGTTTCCCTCTGGATCTGTTCATGGCTCAGTGCTACGCCAACGCCGATGACCTGGGCAAGGGCCGGCAGATGCCCGTGCACTACGGCAGCAAAGATCTGAACTTTGTcaccatctcctctcctctggccACTCAGATTCCCCAGGcGGCCGGAGCTGCATATGCCCTCAAAAGAGAAAACATGAACCGGGCTGTGATCTGTTATTTCGGAGAGGGCGCGGCCAGCGAAGGGGACGCACATGCCGGCTTCAACTTCTCTGCGACGCTCGAGTGCCCGCTGATATTCTTCTGTCGTAACAACGGCTACGCCATCTCCACCCCCACCAACGAGCAGTACAGGGGAGATGGCATTGCTGCTCGTGGTCCGGGGTACGGCATGCTGTCCATCCGTGTCGACGGGAACGACGTGTTTGCCGTGTACAACGCTACGAAGGAGGCGCGCCGCAGAGCCGTGGCGGAGAACCAGCCCTTCCTCATCGAGGCGATGACCTACAGAATCGGGCACCACAGCACCAGTGACGACAGCTCGGCGTACCGCTCGGTGGACGAGGTGAACTACTGGGACAAGCAGGACCATCCCATCTCCCGGCTGAGACACTACATGACGGCCCGCGGCTGGTGGAGTGAGGACGACGAGAGGAGCTGGCGGAAGCAGTCGCGCAAGACGGTGATGGAGGCATTCGAGAGGGCCGAGAAACGCCTGAAGCCCAACGTAGAGCTGATGTTCACCGACGTGTACCAGGAGATGACGCCCGGTCTGAACAAGCAGAGAGAATCCATGTGGAGGCACGTGCAGCAATACAAAGAGCACTACCCACTCGACCTGTACGATAAATAACTGCATCCACAGGGTGGAACCACTTGCAATTTGCTGACTAAATGTGGGAGTGGGTGACAATTGAGACTAACAAACTGTTGCACACCTTTTACTGTATTCATACAAATATAGTTTTGATATGACGTGTGTCATTTCTTTCTGCACAACTTAGGAAGAACGAAAAATATTGTCCTTCATGCCTCTGGGTTTGGTGCCTTAAGTTAATAGATTTGCTGTCCATAGTAGAGCTCTTTAATGATTATTAAATCACACTCTCGTTCCCAAAGTTACCACTGTTCTTTTTGCagagcagcaaaaaaaacagctgGTGCAGTTTGAAACTGACAAATCGAGCAATAATCGTTAGAATTGTACCCATGTTGTTAATGTTCCCTTTCCTGTAACTGTCCTCTCCAGTGATCCTGGTATTTAAAACATTTCCTTGTGTATCATTAAGGTGACTGACAAacttgttgtttaaaaaaaaaaaaaagaaaaaaactatttgaatGGTTTTTAGTATACACACCCAGATTTTAGATGGGTTTGTATGCTGTAATGCTGTTACACACTATTCTAAATCCCAGAACTGTACAATCATGTTTGGTGTTTTGTGAAAAAATAAACTATGAAACTTT

Function

symbol description
bckdha Predicted to enable 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity. Predicted to be involved in branched-chain amino acid catabolic process. Predicted to be part of mitochondrial alpha-ketoglutarate dehydrogenase complex. Human ortholog(s) of this gene implicated in maple syrup urine disease. Orthologous to human BCKDHA (branched chain keto acid dehydrogenase E1 subunit alpha).

NR:

description
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor molecular_function

KEGG:

id description
K00166 BCKDHA, bkdA1; 2-oxoisovalerate dehydrogenase E1 component alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786405.1 True 2137 mRNA 0.49 8 47215861 47225227

Neighbor

gene id symbol gene type direction distance location
bicra gltscr1 coding downstream 27498 47172227 ~ 47188363 (-)
ehd2b ehd2 coding downstream 45512 47158045 ~ 47170349 (-)
psmd8 psmd8,LOC102787089 coding downstream 65251 47143741 ~ 47150610 (-)
exosc5 exosc5 coding downstream 81160 47118397 ~ 47134701 (-)
akap1b akap1 coding downstream 1310854 45872223 ~ 45905007 (-)
LOC120549478 NA coding upstream 9326 47234553 ~ 47275950 (-)
st14a NA coding upstream 101031 47326258 ~ 47355399 (-)
aplp2 aplp2,LOC102785027 coding upstream 134886 47360113 ~ 47469462 (-)
LOC120575471 NA coding upstream 536238 47761465 ~ 47766270 (-)
LOC120551946 NA coding upstream 589312 47814539 ~ 47825418 (-)
G24508 NA non-coding downstream 1625 47213994 ~ 47214236 (-)
G24507 NA non-coding downstream 2650 47212945 ~ 47213211 (-)
G24506 NA non-coding downstream 3012 47210623 ~ 47212849 (-)
G24505 NA non-coding downstream 5449 47210207 ~ 47210412 (-)
G24504 NA non-coding downstream 7026 47208454 ~ 47208835 (-)
G24512 NA non-coding upstream 25159 47250386 ~ 47251960 (-)
G24518 NA non-coding upstream 134354 47359581 ~ 47365129 (-)
G24523 NA non-coding upstream 245162 47470389 ~ 47470979 (-)
G24548 NA non-coding upstream 304807 47530034 ~ 47530348 (-)
G24557 NA non-coding upstream 340760 47565987 ~ 47566217 (-)
bet1l bet1l other downstream 73265 47134854 ~ 47142596 (-)
mrps23 mrps23 other downstream 2390868 44816628 ~ 44824993 (-)
smco4 NA other downstream 3426426 43770066 ~ 43789435 (-)
LOC120553425 NA other downstream 3499120 43700971 ~ 43716741 (-)
LOC120574039 nlk,nlk2 other downstream 3869188 43236682 ~ 43346673 (-)
dhx34 dhx34,LOC102778731 other upstream 70327 47295554 ~ 47325453 (-)
nectin1b nectin1,LOC102782356 other upstream 932126 48157353 ~ 48398620 (-)

Expression


Co-expression Network