LOC120549609


Basic Information

Item Value
gene id LOC120549609
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6350475 ~ 6353001 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786631.1
ATGCAGAATAACTCTGAGGTGGTGTTTGTGCTTCAGGGTCTGAATGACTCTCTGACAAACCGTCAGATGTACTTTGCCGTCGCCCTGATGTCATACCTCTTCACCATCTTCGTCAACCTGACGCTCATCGTCACCGTCTGCCTGGATAAAACGCTCCATGAGCCGATCTACATCTTCCTGTGCAGCCTGTGTTTTAACGGTATCTGCGGAGCGTCGAGTTTCTACCCGAAGCTGCTTCACGGCCTTTTGGCCGACTCTAACGTCATCACGTATGCCGGCTGTTTGACTCAGATGTTTGTGATTTACTGTTATGTTTTCTGTGAGTTCACCAGTCTGACCGTCATGGCGTACGACCGCTACTTGGCCATCTGTAAGCCGCTGCAGTACCCAATGCTGATGTCGGTGCAGAGggtggcgctgctgctgctgctcacctGGTGCTTCTCGCTGTTGGAGGCAATTATCGGCAACATACTGACCACCAGATTGCCGCTGTGTAGGCGCCACATCAACCAGTTCTTCTGCACCAACTGGGAGGTGGTGAAGCTGTCGTGCTCAGACACAACCGGTAACAACATCTACGGCTTTGTGCTAATTTTTATGCACACTTCGCAGACCGGACTCATCTTGGTGTCCTACACCCACCTGGTTCGAGCCTCGCTCAGGTTGGCGTCCAACCGCAAGAAGTTCGTACAGACGTGCGTGCCGCATCTGGCCACGCTACTCATCTTTGCAAGCTCACTGATGTTCAATTCCATCTACTCTCGCTATGGCGCCGGCACGCTACAGGCGCTGCAGAACCTGCTGGCCGCAGAGTTCCTGGTGGTCCCGCCCCTCATCAACCCCATCATCTACGGCATCAACCTGCATCAGATCAGGTCCAGGATCATCCACAACTTCTCCCACAAACCATCAAACCTGatcaatacatgtttacatggAGCCCTTtcactgcctgtctgtctgtaactga
>XM_039786641.1
CGAGTCCAATCTGCAGTAGGGTCTGAATGACTCTCTGACAAACCGTCAGATGTACTTTGCCGTCGCCCTGATGTCATACCTCTTCACCATCTTCGTCAACCTGACGCTCATCGTCACCGTCTGCCTGGATAAAACGCTCCATGAGCCGATCTACATCTTCCTGTGCAGCCTGTGTTTTAACGGTATCTGCGGAGCGTCGAGTTTCTACCCGAAGCTGCTTCACGGCCTTTTGGCCGACTCTAACGTCATCACGTATGCCGGCTGTTTGACTCAGATGTTTGTGATTTACTGTTATGTTTTCTGTGAGTTCACCAGTCTGACCGTCATGGCGTACGACCGCTACTTGGCCATCTGTAAGCCGCTGCAGTACCCAATGCTGATGTCGGTGCAGAGggtggcgctgctgctgctgctcacctGGTGCTTCTCGCTGTTGGAGGCAATTATCGGCAACATACTGACCACCAGATTGCCGCTGTGTAGGCGCCACATCAACCAGTTCTTCTGCACCAACTGGGAGGTGGTGAAGCTGTCGTGCTCAGACACAACCGGTAACAACATCTACGGCTTTGTGCTAATTTTTATGCACACTTCGCAGACCGGACTCATCTTGGTGTCCTACACCCACCTGGTTCGAGCCTCGCTCAGGTTGGCGTCCAACCGCAAGAAGTTCGTACAGACGTGCGTGCCGCATCTGGCCACGCTACTCATCTTTGCAAGCTCACTGATGTTCAATTCCATCTACTCTCGCTATGGCGCCGGCACGCTACAGGCGCTGCAGAACCTGCTGGCCGCAGAGTTCCTGGTGGTCCCGCCCCTCATCAACCCCATCATCTACGGCATCAACCTGCATCAGATCAGGTCCAGGATCATCCACAACTTCTCCCACAAACCATCAAACCTGatcaatacatgtttacatggAGCCCTTtcactgcctgtctgtctgtaactga

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050911 detection of chemical stimulus involved in sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786631.1 True 973 mRNA 0.53 1 6352029 6353001
XM_039786641.1 False 956 mRNA 0.53 2 6350475 6353001

Neighbor

gene id symbol gene type direction distance location
LOC120545249 NA coding upstream 26065 6323484 ~ 6324410 (+)
LOC120545240 NA coding upstream 59497 6290058 ~ 6290978 (+)
LOC120545220 NA coding upstream 175965 6169219 ~ 6174510 (+)
LOC120545214 NA coding upstream 186099 6161446 ~ 6164376 (+)
LOC120545205 NA coding upstream 208088 6141467 ~ 6142387 (+)
abcg1 abcg1,LOC103475277,LOC103152983,LOC102205798 coding downstream 67512 6420513 ~ 6448328 (+)
LOC120545383 NA coding downstream 157744 6510745 ~ 6520784 (+)
LOC120572075 NA coding downstream 159176 6512177 ~ 6516516 (+)
LOC120552698 NA coding downstream 172207 6525208 ~ 6526163 (+)
LOC120572775 NA coding downstream 181468 6534469 ~ 6535401 (+)
G14841 NA non-coding upstream 89253 6260871 ~ 6261222 (+)
G14807 NA non-coding upstream 159966 6164445 ~ 6190509 (+)
G14792 NA non-coding upstream 347561 6002208 ~ 6002914 (+)
G14788 NA non-coding upstream 429789 5919899 ~ 5920686 (+)
G14782 NA non-coding upstream 523795 5826342 ~ 5826680 (+)
G14863 lipt2 non-coding downstream 28722 6381723 ~ 6388400 (+)
G14901 NA non-coding downstream 105123 6458124 ~ 6458818 (+)
G14902 NA non-coding downstream 105941 6458942 ~ 6463821 (+)
G14904 NA non-coding downstream 112507 6465508 ~ 6466255 (+)
G14907 NA non-coding downstream 120509 6473510 ~ 6473769 (+)
G14344 NA other upstream 821856 5510757 ~ 5528619 (+)
G14187 LOC107380983,LOC108250349,LOC108250351,LOC103477369,LOC103473932,LOC107835021,LOC106936810,LOC102294474,LOC102776571,LOC108229490,LOC103360213,LOC107834023,LOC103368570,LOC102214284,LOC102800009,LOC101480046,LOC101470105,LOC102792843 other upstream 933340 4801340 ~ 5417135 (+)
G14209 LOC102792843 other upstream 1823098 4500173 ~ 4527377 (+)
LOC120570718 LOC103473932 other upstream 1900645 4363666 ~ 4449830 (+)
rnf169 NA other downstream 40061 6393062 ~ 6404425 (+)
spcs2 spcs2 other downstream 54984 6407985 ~ 6417509 (+)
G15019 NA other downstream 619844 6972845 ~ 6989396 (+)
G15173 LOC102077075 other downstream 1045100 7398101 ~ 7399141 (+)
G15234 NA other downstream 1138364 7491365 ~ 7492057 (+)

Expression


Co-expression Network