LOC120549655 (LOC104964223)


Basic Information

Item Value
gene id LOC120549655
gene name LOC104964223
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 34865640 ~ 34869420 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786711.1
ATGGTGTTTGCACTGGAGGAAATCAATCACAGTACAACCTTGCTGCCAGGTGTGAAGCTGGGCTACTATATTTTTGATAGCAGTGGCCGACCGCCATGGGGTCTCCAGGCAGCACTGTCACTGGTTGGAGGAGAAAGCGCGAGCTGTGATCACCCTGTTCCCTTGATCATCGGTGGTGCTTCATCCCAAGAAGCCAAGATACTCTCCAGAATCTTGGGCCCACTCTCTGTACCTGTAATTAGCTACCTGGCAAGCTGTCCCTGTCTAAGTAACAGGCTTCAATTTCCTAACTTCTTCAGGACCATACCCAGTGATATTTACCAAGCTCGGGCCATTGCTCAGCTTGCCATACGCTTTAATTGGACCTGGATTGGGGCAGTGGTGGAAAACACCGATTATGGCCATGTTGCATTAAAGGTATTTCAGGAGGAGACTCAGGGGGCAGGAGTGTGTCTGGCATTTGTAGAGATTCTCCAAGGGGAAAACATTGTGAGTGATGCCAGACGAGCAGCCGTCACAATTCAGACCTCGACCGCAAAAGTGATTCTGATCTTTTCCTGGTACACAGATGTGACGGAACTGTTCCTGCAACTCTCCAAGATAAATGTGACTGACAGACAGTTTCTGGCCAGTGAGGCTTGGAGCACCAGTGGTGATCTTCTCCAAAATGTTGTCACAAGTAAAGTGGCAAAAGGTGTTCTTGGTGTTGCCATTAGAAGTTCAGCTGTTTCTGGATTTGAAAATTATATCAGAGGTTTGCACCCAATTTATCAACCTGATGATGAGTTCTTAAGAGAATTGTGGGAAGCTGAATTTGGATGCAGTCCTCAACTTTCAACTCCTGCGAAAACTCTTCAGAGAGCTTCACTATCACCCTGCAGAGGCACAGAGTCCCTAGAGGGAGTACAGAATCAGTTCACCGACGTCTCTCAGCTAAGAGTGACATATAATGTCTACCTTGCTGTTTATGCCGCAGCCCACGCCCTTCACAGCCTTCTGTCCTGCCCCGACACAGACAGCTCACACGGAAACAACAGACCCACCTGCTCTTCTCCAAAACATATCAAATCCATAGAGCTGTTGCAGCACTTGAACAATGTGAACTTCACAACGCCACAGGGTGAAAAGTTTTATTTCCAAGAGGGCGACATTCCAGCAAAGTATGACCTTGTCAACTGGCAGAACACCCCTGAGGGGTCACTCAGACTTGTTTTGATTGGTCGTGTGGACGGGTTTGACCTCCACCTCAACCAGTCAGCTGTTATGTGGAGCACCGGATCCAATCAGGTGCCTACTTCAGTGTGCAGTGAGAGCTGCCCCCCAGGCACACGAAAGGCCAGCAGGAAAGGTGAACCTCTCTGCTGCTATGACTGTATTCCATGTGCAGATGGGGAGATTAGCAATCAAACTGGTTCCCTTCACTGTGAGCGTTGTCCATTAGAGTTTTGGTCCAATGCTAAACGAACTGCCTGCATCCCTCGCCAGCTGGACTTCCTTTCCTTTAATGAAACTTTGGGCATTACTCTGTCTACAGCAGCTGTGTCTGGTACTGTGGTGACAACAGCTGTATTTGTGGTGTTTCTCTGCTACCGTCAAACACCTATGGTTCGAGCCAACAATTCAGAACTGAGCTTCCTGCTTCTCCTGTCGCTGAAGCTCTGCTTTCTGTGCTCACTGGTGTTCATTGGTCGTCCATCAGTCTGGGCTTGTTGGTTCCAGCAGGCAGCTTTTGGGATCAGCTTTGTACTTTGTGTTTCCTGCCTCCAAGTCAAAACCATAGTAGTTCTGGCAGCTTTCCGCTCAGCTCGGCCTGGTGCTGAAGGCTTGATTAAGTGGTTTGGTCCAGGCCAACAGAGAGGAAGTGTTTTCATTCTTACTTGTATCCAGATTATCATCTGTGTCACATGGCTGTCCCTCAGCCCCCCCGTGCCTCAACGTGATCTGGGTTTtcaggggtcaaaggtcaccctGGGGTGCGCCATGTCCTCTGTGGTGGGCTTCTCTCTGGTTCTAGGTTACATTGGTTTGTTGGCCTGCACCTGCCTTCTCTTGGCCTTTCTTGCTCGGAAACTCCCTGACAACTTCAATGAGGCCAAACTGATCACCTTCAGCATGCTGATATTCTGTGCTGTCTGGGTGGCCTTTGTCCCTGCTTATGTTAGCTCTCCTGGGAAATATGCTGTTGCTGTGGAGGTTTTTGCAATCCTGGCCTCTAGCTATGGTTTACTGCTCTGCATTTTTGCCCCGAAATGTTTCATCATTCTCTTGAGGCCTGAGAAAAACAGCAAGAAACACCTGATGGCCAGATAA

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786711.1 True 2310 mRNA 0.49 11 34865640 34869420

Neighbor

gene id symbol gene type direction distance location
LOC120547817 NA coding downstream 99507 34748462 ~ 34766133 (-)
LOC120548153 NA coding downstream 121054 34735651 ~ 34744586 (-)
LOC120551691 NA coding downstream 131019 34717486 ~ 34734621 (-)
LOC120572251 NA coding downstream 156181 34700102 ~ 34709459 (-)
LOC120551684 NA coding downstream 176678 34681877 ~ 34688962 (-)
LOC120551709 LOC104964223 coding upstream 2453 34871873 ~ 34888054 (-)
plch1 plch1,LOC103364399,LOC101474427,LOC107380077 coding upstream 31010 34900430 ~ 34972206 (-)
c18h3orf33 NA coding upstream 103584 34973004 ~ 34976362 (-)
zgc:112083 NA coding upstream 148826 35018246 ~ 35027432 (-)
map6b LOC103364403,LOC102775646,LOC100702126,LOC101476458 coding upstream 165272 35034692 ~ 35040789 (-)
G21685 NA non-coding downstream 79404 34785923 ~ 34786236 (-)
G21665 NA non-coding downstream 434342 34431071 ~ 34431298 (-)
G21640 NA non-coding downstream 695145 34169362 ~ 34170495 (-)
G21620 NA non-coding downstream 707194 34090331 ~ 34158446 (-)
G21575 NA non-coding downstream 871387 33993936 ~ 33994253 (-)
G21716 NA non-coding upstream 39945 34909365 ~ 34909721 (-)
G21779 NA non-coding upstream 146627 35016047 ~ 35016280 (-)
G21805 LOC107597532,LOC100125490,LOC103474213,LOC103139657 non-coding upstream 366655 35236075 ~ 35240308 (-)
G21854 NA non-coding upstream 551861 35421281 ~ 35421721 (-)
G21885 NA non-coding upstream 713061 35582481 ~ 35582706 (-)
LOC120570300 NA other downstream 301095 34555835 ~ 34564545 (-)
G21674 NA other downstream 383607 34481458 ~ 34482033 (-)
LOC120548089 gpr149,LOC102798740 other downstream 760820 34093140 ~ 34104820 (-)
mfsd1 mfsd1 other downstream 1236372 33613429 ~ 33629268 (-)
LOC120549978 NA other downstream 1722377 33129495 ~ 33143263 (-)
dyrk1ab dyrk1a other upstream 177758 35047178 ~ 35096251 (-)
zgc:77784 LOC103362442 other upstream 395875 35265295 ~ 35336232 (-)
lrfn1 lrfn1 other upstream 1107322 35976742 ~ 36264039 (-)
taok1a LOC103356490,LOC104958432 other upstream 1440497 36309917 ~ 36330409 (-)
dph1 dph1,LOC102789142 other upstream 1591259 36460679 ~ 36550114 (-)

Expression


Co-expression Network