LOC120550005 (tbx10,LOC104965412)


Basic Information

Item Value
gene id LOC120550005
gene name tbx10,LOC104965412
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 20023847 ~ 20027797 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787131.1
acacacacacacacacacacacacacacacacacacacacacacacacacacacacaccactataCACCATTCACATTTGTGTCTACTTTGAGTGTTATGAACTATGGTCAGGTTTTTATGTGACAAAAATCCTTGCATGACCCACACTGGGAGACAAAGACACTTTCCAATACCTAACAACAttggacaacaatggaaagAAGTCCAGAACGTTTTCAATGacactgtctgatattttgcatTTTATAAATGTGCTAGAATGTTGCCATCAAACCAAACCAGAAATGTCCACTTGAGTCAGTTTTAGGGAAAAACTGACTCTCTAATTAGTATGGTGTTGAAACGCAATTTGCtgctgtcttcatctgtccaCACCCAGTAACACTGGGCTGATTAGGATGTTATTAATGTCCTACTGGTTGGTCAAAACAAGCCCCACTAAAGGCTTTAGGCTATATGAAACAATAGAAAATGTGCGCACACATTTGTGTATTCACAATTCTTGGGGCGCATTCATGGGCGTGCAGCTGTGATTAGTGCATGTCAGTGGCACTATGAGTATTGTAATGGATGAGGCAGGCATGAGGTCCCCAGTGAGAGACTCATGGTGTATAAAACCAGCTTGTTCTGGGACGCAAACAGCTACTCCGAACACTTGGATGTACATCTACCACAGCACCTGGCACTGGACTGGGAGGAAGATTTttgccttcagttctgcgttgTGTCGCAAAGTTGTGGGTTTGATTCTCTACTGGTCTTGATGTAATGACAAGAGTTGCTACTTTTGATCAGAAGTGGAAGAACGGACTGAAGTGAACAGAAATATTAAAGACAAAACGGCAAATTCATTCATATTATTTACCTTGTAAATGTACAAAATGATGGATGGTCCTCATATGCCTCAGACCTGTGAAGTATCTCTGCCCTGCTGTACAGATGGGGGGTCCCTGTCGAGCGTTAAGGCCCCCCAAGTCAGTGGGGTCAGAGTTCAGCTGGAGATGCATGCACTTTGGCAGCAGTTTGACCAGCTGGGCACAGAGATGATTGTTACCAAAGCTGGAAGGAGGATGTTTCCAACATTCCAGGTTCAAATCTCCGGGATGGATCCTACTGCTGAATATGTCCTGCTCATGGACTTTATCCCTGTTGACAATAAAAGATACAGATATGCGTTCCACAGCTCATCCTGGTTGGTGGCAGGGCGAGCGGATGTTGTAGCCCCAAGCAGGATGCATTTCCACCCAGACTCACCTGCCCATGGAGCCCAGTGGATGAAGCAGACCGTATCCTTCGACACTCTCAAGCTCACCAACAACCTGCTGGATGACAATGGACATATGATATTGAACTCCATGCATCGCTATCAGCCACGCTTCCATGTGGTGTATGTAGATCCAGCTCCCAACAGTCACTTAAACGCATACAGGAACTTCTGCTCTTTTTCCTTCCCTGAGACACGCTTCATGGCCGTCACTGCCTATCAGAACCACCGGATCACCCAGCTAAAAATTGCTAGCAACCCATTCGCCAAAGGCTTCAGGACTACAGACCCCCAGGACAGAGTGGGTTATTCGGGACCTCTGGCAGTGTggtgtccaccagagggcagagCTGAACCCCTCACCAACAAACTTGGAGAGCAGGGAAGCTGGGGCTCAAAGACTTCAAACAGACAGGAGGACCCAGCCCCACTGTTGGTGGAGCAGTGTGGACTGTTCCACCACTGTAAAGACTCTGTGGGACTCTGTGGGAGCAAAGATGGGGATAGTGTATTAGCACCTGCTTCCTTCATTCCTATTCCATCCTACTGGGATTGTCCAGGATCATCTCAAGAGAGAGACAGTCTGTCATAAAGAGAAGCAAACTGACTGAACTTGAATTCAATTTGATCTACTGCTTGCTTCCTCATTTTAAAGCATTCATAATTTGTTTATAGTTTGTGGTCTCACTCACAAAATTAATTTATAGGGATGCTATGCATTATGCAAGTGTTTCATCAAAATCCAAGCGTCTATGGCAATATGATAGATGTACAGCAATGATGCAATGTgctataaataatatatagcATACAGTAAGGGCACTTCATAGCAAAGTACTATAGATTACAGCAATGATACAGTGGTGCTCCTACAAACTCACAggtgagaaaaacaaacagtcaATTTGGTTATTAACTATAGT

Function

symbol description
tbx10 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate specification and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: T-box transcription factor TBX1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787131.1 True 2188 mRNA 0.45 8 20023847 20027797

Neighbor

gene id symbol gene type direction distance location
bace1 bace1,LOC102782465 coding downstream 492 20011130 ~ 20023355 (-)
pcsk7 pcsk7 coding downstream 14666 19990719 ~ 20009181 (-)
nudt8 LOC107720444 coding downstream 70037 19949218 ~ 19953810 (-)
si:ch1073-280e3.1 NA coding downstream 83428 19933493 ~ 19940419 (-)
LOC120575221 NA coding downstream 98746 19914123 ~ 19925101 (-)
LOC120550021 NA coding upstream 544 20028341 ~ 20030788 (-)
sidt2 sidt2 coding upstream 32136 20059933 ~ 20078143 (-)
LOC120574226 lsamp,LOC106534328 coding upstream 198034 20225831 ~ 20948979 (-)
igsf11 igsf11,LOC102790613 coding upstream 936043 20963840 ~ 21080775 (-)
LOC120573880 NA coding upstream 1070143 21097940 ~ 21108764 (-)
G18216 NA non-coding downstream 167537 19851904 ~ 19856310 (-)
LOC120548779 coq8b,LOC103364879,LOC107395920,LOC108247334 non-coding downstream 267854 19754887 ~ 19755993 (-)
G18184 NA non-coding downstream 374195 19649216 ~ 19649652 (-)
G18179 NA non-coding downstream 395207 19625403 ~ 19628640 (-)
LOC120573122 NA non-coding downstream 482717 19538375 ~ 19541130 (-)
G18329 cep164 non-coding upstream 25423 20053220 ~ 20054134 (-)
G18337 NA non-coding upstream 88488 20116285 ~ 20119606 (-)
G18366 NA non-coding upstream 157014 20184811 ~ 20258055 (-)
G18367 gap43 non-coding upstream 165083 20192880 ~ 20205688 (-)
G18381 NA non-coding upstream 678724 20706521 ~ 20706785 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other downstream 213717 19800751 ~ 19810130 (-)
fbxo46 fbxo46,LOC102786997 other downstream 306540 19701227 ~ 19717307 (-)
LOC120545639 eif4g1 other downstream 1800954 18179013 ~ 18222893 (-)
zgc:165508 fam131a,LOC102799247 other downstream 1871879 18127466 ~ 18151968 (-)
LOC120552194 NA other downstream 2133186 17799999 ~ 17890661 (-)
LOC120547993 NA other upstream 109275 20137072 ~ 20141538 (-)
si:ch1073-340i21.1 NA other upstream 1066380 21094177 ~ 21097201 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other upstream 1209391 21237188 ~ 21261923 (-)
LOC120572205 NA other upstream 1583017 21610814 ~ 21615246 (-)
gdpd5b gdpd5,LOC103357216 other upstream 1636279 21664076 ~ 21710363 (-)

Expression


Co-expression Network