LOC120550190 (LOC103358193)


Basic Information

Item Value
gene id LOC120550190
gene name LOC103358193
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12045615 ~ 12056544 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787144.1
GCTGCTGCCGTAGCCCACAGaccagacagcagcagcagcacgaaTATCTAACACCGGGGATGGTCTCATCACTTTTAAAAAACACTATCAACGTTATATCTCCACAAAATGAAGTTCCCTTACTCATAGGTTCGCGAGGATATGGTGAGGAGAAGGCGTCCCATGCTGCATTAGTGGAACAGTGACATGCTGGCCTGTCTGCCAGCATCAGGTGACCCTACCATCAGACTTCTCTCCCGCACGCAGATGAACACTGGACTTCAGAAATGGGAAACTACACAGAAGATGAGATCTGCCAACTATCCAACCCCAGCAGAGTTGGATGCCTATGCTAAGAAAGTTGCCAACAACCCTCTGACCATCCAGATCTTCCCCAACAGTGTCAAAGTACCTCAAAGGAAGCACATTCGCCGCACAGTCAACGGGCTTGACACCTCCTCGTCCAGCCAGCGCCACAGCCCCTACCCGTCTCAGGTCAGCTCCAGTCGGGGTCTGCTGGCTGTCCTCCGTACGCCCGCCAAAGGCGTCAAAGAGTCGGACGCTAGCCGCACCCGGCAGCTTCAGAAGGGCGTCATGAACCCTCACGGTGGGCCCTACGCCGCTCAAAGCACTTTAAATCTTCCTCAGCCTGCGCCGCACCTACAGGGCCCGTCTCAGCCCGCGGCCCAGAAGCAGGGCATGGTTCACCCACAGGCGCTCCATCAAAGCATGACTCATCAGATGACTTTACAGCTGCCTCAAACCGTGCCGCACccacaggctttacagcataggAACATGGCTCATTCGCAAGCTCTGCAGCGGCAGCAGAGTCTGTCCCAGGTCCAGACACCGCAGCAAAGATTGGCTCCTCCACAAGGCATACAGAGGCAGCAGAGTCTGCCTCACACCCAggctctgcagcagcagcagcagcagcagcagcagagccagTCTTGTCCACCAGTCGCACCGCAGCAGCACCTCTCTCATCTGCAGACACTAAAGCATCAGGCGGCTCCCCCGCAAACTTTACTTTCACAACAGGGAGCGACTCAGGATCTGCGCCACATGTCCGATGGAGCCCAGCTTCCGAGCCTGCAGCACAGCCAGGGGCTGGTCGGCTCCCAGCCGCTTCCCCAGGCCGTGGGCACAGGACCTCCCACCGTGCCCAGCAGCCTCCAGCAGCCCCCGCCGGGGGCGTACGGGCCCCGGAAGCTCCCCGACGCGGACGCCCCACCAAATGTAACTGTATCTACCTCCACCATCCCACTGTCCATGGCGGCCAGCTTGCATCAGAACCGGCCGAGCGACCTGAGCAGCATCGTGCACCAAATCAACCAGTTGTGCCAGGCGCGGGCCGGTATGGGCGCCACCTCGGTCTGCGAGGGCCAGATCGCGAACCCCAGCCCCATCAGCCGCAACCTGCTGATCAACGCCAGCTCCAGGGTGTCCTGTCACCACCCGGCACTGGGCTCCGTGCCCAGCTGCCTCATGGTGGGACCCTCAGACAAAGCTACAGCTCAGACTCCCAACGCTGCTCTCCATTCCCAGCCCAGTATAGCTGCTACTAATAGCATACCTGCCTTTCACGCAGACCCAGAGAAGGTacatctgcagcagcagcaacagctgcAGCACCATTTACATCAGCAGAAACAgttacagcagcagcatcatcatctacaacaactacaacagctgcagcagcagcagcgctccTGGGCCCAGCATCAGCTGGCCCACATGCAGCAGCCGCCCGAGGGGGCACATCCCTGCAAGAACCCAAGGATGGAGCCTCCGAGCGAGTGCGCCTTCCCCTCTCGAAACCTCAGCTATTCCAACAAGCTGCCCAACACTGCACAGTCCTTTCCCCTAAAACACCCCGCGGAAAAGCCACGGCCTTCGTCCCCCGTCAACTGCCCGGTAGGTTCTATGCCTTACGTTAACGGCCACTACATGCAGCCACCGTGGGGCGGCCTTCCCGCCACAGCAGGGAACAATGGAACGGGCCCTCAGGACCTCCCGGTGGCCTTCCAGGGAGGGCAGGCCGCCGCCTCCACGGACCGCATCCGAGGGGCAAAGTACAGGCCGGGGAAAGAGTGTCCTCCCGGCCAGCCCAAGTTGATGCAGAACGTGGATTTCTTAGGAGGGGACTTCCAGATGCCCAGCTTTCAGGAGCAGAACATGGCTGTGTTGGAGAAGATGCACAGGTCAGCCATGGGCCAAGTTCAGGAGCCCAATAATGGTGGGAGTGTTCACGCTCATCACCCGGGCTACCGTTAAAGCGTGCGCAtatctccctctcccctccgccccccccatccccccaccccctcctcttGGTGTGTTCAACAGCCACTTTCAGCTTCTGTGGTTCATTCTCTATTTAAGATCTTGCAAGTGATcaattgtattttattgctcCTAGGGATGTTAATGATTAACCGTTAACCGACAATAAGAATTGACCGATTCAGTACTCTCAGTtgaaaacagttaaaaaaaaaaacacttccaaCTAAAATAAGTTAACATTTTTGCATGATTTTAAAAGAACGATA

Function

NR:

description
PREDICTED: protein FAM222B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787144.1 True 2543 mRNA 0.57 3 12045615 12056544

Neighbor

gene id symbol gene type direction distance location
LOC120550300 LOC107727921,LOC103377937,LOC107661103,LOC100710678,LOC101484592 coding upstream 13811 12010676 ~ 12031804 (+)
LOC120550284 LOC106522765 coding upstream 72435 11957896 ~ 11973180 (+)
LOC120551249 NA coding upstream 162591 11871928 ~ 11883024 (+)
ompa omp,LOC102310369,LOC101166404,LOC105930201,LOC106535736 coding upstream 212251 11829812 ~ 11833364 (+)
LOC120550461 NA coding upstream 432393 11592428 ~ 11613222 (+)
aamdc aamdc,LOC102795396 coding downstream 17074 12073618 ~ 12077875 (+)
LOC120550138 NA coding downstream 87755 12144299 ~ 12173696 (+)
LOC120550122 NA coding downstream 162366 12218910 ~ 12235751 (+)
LOC120550477 NA coding downstream 199093 12255637 ~ 12273823 (+)
aqp11 aqp11,LOC102780836 coding downstream 332028 12388572 ~ 12393838 (+)
G16293 NA non-coding upstream 16490 12022221 ~ 12029125 (+)
G16292 NA non-coding upstream 17988 12012498 ~ 12027627 (+)
G16283 NA non-coding upstream 62709 11981140 ~ 11982906 (+)
G16280 NA non-coding upstream 75610 11968194 ~ 11970005 (+)
G16270 NA non-coding upstream 132935 11900041 ~ 11912680 (+)
LOC120550573 NA non-coding downstream 43434 12099978 ~ 12100577 (+)
LOC120550493 NA non-coding downstream 75807 12132351 ~ 12137334 (+)
LOC120550541 NA non-coding downstream 143250 12199794 ~ 12200891 (+)
G16464 NA non-coding downstream 356955 12413499 ~ 12415940 (+)
G16463 NA non-coding downstream 359466 12416010 ~ 12420722 (+)
G16267 NA other upstream 144742 11894504 ~ 11900873 (+)
zgc:101731 LOC106580895,LOC100194580,LOC103372138 other upstream 1540277 10388232 ~ 10505338 (+)
G15712 NA other upstream 2042020 10002250 ~ 10003595 (+)
LOC120551195 NA other upstream 2042243 9866710 ~ 10003372 (+)
G15642 NA other upstream 2377136 9645137 ~ 9668479 (+)
G16467 clns1a,LOC102781126 other downstream 339451 12395995 ~ 12409274 (+)
LOC120552034 LOC104947607 other downstream 385586 12442130 ~ 12456583 (+)
LOC120554522 NA other downstream 574130 12630674 ~ 12630864 (+)
G16590 actn4,LOC102210441 other downstream 812286 12868830 ~ 12922469 (+)
hif1al NA other downstream 1051318 13107862 ~ 13137034 (+)

Expression


Co-expression Network